/var/www/html/rsat/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.234142_2026-01-11.234142_53Rg2T/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.234142_2026-01-11.234142_53Rg2T/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title dp_avec_ctrl -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.234142_2026-01-11.234142_53Rg2T/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.234142_2026-01-11.234142_53Rg2T/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.234142_2026-01-11.234142_53Rg2T/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	5977
	Sum of sequence lengths      	1821896
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	304
	Possible positions           	1815919
 Oligonucleotide statistics:
	Total occurrences    	1554143
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	1815919
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	171	3222
	2	-24	[-479,-460]	-469.5	179	3517
	3	-23	[-459,-440]	-449.5	210	3864
	4	-22	[-439,-420]	-429.5	244	4530
	5	-21	[-419,-400]	-409.5	279	5309
	6	-20	[-399,-380]	-389.5	323	6044
	7	-19	[-379,-360]	-369.5	378	7104
	8	-18	[-359,-340]	-349.5	430	8105
	9	-17	[-339,-320]	-329.5	491	9228
	10	-16	[-319,-300]	-309.5	561	10633
	11	-15	[-299,-280]	-289.5	634	11949
	12	-14	[-279,-260]	-269.5	743	13813
	13	-13	[-259,-240]	-249.5	866	16119
	14	-12	[-239,-220]	-229.5	1037	19054
	15	-11	[-219,-200]	-209.5	1210	22606
	16	-10	[-199,-180]	-189.5	1452	26671
	17	-9	[-179,-160]	-169.5	1853	32957
	18	-8	[-159,-140]	-149.5	2253	41326
	19	-7	[-139,-120]	-129.5	2706	49676
	20	-6	[-119,-100]	-109.5	3371	60632
	21	-5	[-99,-80]	-89.5	4976	82744
	22	-4	[-79,-60]	-69.5	5977	116141
	23	-3	[-59,-40]	-49.5	5977	119540
	24	-2	[-39,-20]	-29.5	5977	119540
	25	-1	[-19,0]	-9.5	5977	119540
	26	0	[1,20]	10.5	5977	119540
	27	1	[21,40]	30.5	5977	119540
	28	2	[41,60]	50.5	5977	119540
	29	3	[61,80]	70.5	5977	114007
	30	4	[81,100]	90.5	4824	79579
	31	5	[101,120]	110.5	3303	59353
	32	6	[121,140]	130.5	2669	48781
	33	7	[141,160]	150.5	2231	40511
	34	8	[161,180]	170.5	1815	32172
	35	9	[181,200]	190.5	1436	26188
	36	10	[201,220]	210.5	1192	22262
	37	11	[221,240]	230.5	1020	18733
	38	12	[241,260]	250.5	854	15871
	39	13	[261,280]	270.5	732	13600
	40	14	[281,300]	290.5	626	11792
	41	15	[301,320]	310.5	557	10484
	42	16	[321,340]	330.5	485	9110
	43	17	[341,360]	350.5	429	8009
	44	18	[361,380]	370.5	375	6990
	45	19	[381,400]	390.5	319	5955
	46	20	[401,420]	410.5	277	5240
	47	21	[421,440]	430.5	242	4461
	48	22	[441,460]	450.5	208	3800
	49	23	[461,480]	470.5	179	3498
	50	24	[481,500]	490.5	168	3039

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
aa aa 127017 605.2 49 0.0e+00 0 300 1 200 241 290 333 369 386 472 489 614 633 807 962 1054 1302 1487 1855 2257 2933 3638 4178 5659 8770 9151 9003 8934 8600 8755 8555 7410 4954 3871 3346 2749 2090 1718 1402 1266 1021 912 749 609 497 511 466 341 315 300 190 203 170
gg gg 103349 554.0 49 0.0e+00 0 300 2 189 168 228 214 245 307 370 438 456 560 614 776 871 952 1226 1517 1934 2293 2801 3697 5328 7430 7052 6958 6755 6696 6871 6855 6510 4664 3401 2777 2361 1653 1344 1105 941 786 630 567 503 418 369 336 263 248 210 146 145 171
cc cc 104032 550.3 49 0.0e+00 0 300 3 175 192 191 204 250 310 353 418 446 501 533 639 816 918 1102 1425 1748 2192 2727 3437 5046 6791 6911 6933 6905 7024 6808 7078 7366 5114 3480 2861 2297 1915 1480 1243 933 770 736 612 582 491 449 352 306 246 209 202 161 154
ct ct 121123 490.2 49 0.0e+00 0 300 4 209 231 216 265 312 342 387 490 571 650 711 758 951 1176 1292 1569 2063 2587 3201 3952 5539 7853 8109 8107 8214 8123 8161 8232 8488 5762 4136 3264 2691 2164 1704 1429 1157 974 781 788 617 575 427 429 332 289 230 228 192 195
tt tt 127630 453.0 49 0.0e+00 0 300 5 215 200 238 308 312 408 398 519 557 728 809 922 1103 1270 1571 1748 2192 2790 3382 3999 5140 7714 8680 8951 8798 8762 8823 8968 8510 5701 4188 3403 2885 2143 1850 1471 1236 1092 911 724 696 623 608 472 375 337 282 232 214 172
ag ag 120054 398.7 49 2.6e-56 4.1e-55 54.38 6 186 221 230 258 330 328 439 499 556 608 737 813 1017 1166 1430 1761 2226 2747 3310 4085 6128 8346 8086 8086 8074 8074 8026 8065 7473 5229 3849 3090 2519 2044 1611 1376 1181 957 789 693 595 552 439 377 331 279 242 209 209 178
tg tg 116213 344.7 49 4.6e-46 7.3e-45 44.14 7 176 190 222 255 285 341 455 497 516 641 717 833 966 1176 1378 1635 2049 2618 3075 3991 5671 8046 7867 7787 7739 7973 7700 7875 7462 5143 3705 3065 2596 1946 1591 1281 1062 953 789 633 588 500 428 412 312 281 239 194 178 181
tc tc 99763 333.0 49 7.3e-44 1.2e-42 41.93 8 179 206 178 234 266 284 298 400 455 550 587 661 791 971 1117 1349 1750 2191 2662 3278 4647 6491 6645 6678 6693 6734 6785 6854 6979 4510 3274 2686 2255 1706 1334 1164 961 767 643 617 499 465 394 327 295 258 191 188 160 156
ca ca 115722 314.4 49 2.0e-40 3.3e-39 38.49 9 206 199 234 262 315 338 396 445 558 595 643 772 941 1066 1346 1593 1977 2535 3152 3802 5403 7489 7735 7751 7846 7802 7880 7831 7776 5403 3769 3132 2573 2111 1635 1302 1119 921 783 652 601 531 457 364 359 294 242 216 192 178
gc gc 80931 287.5 49 1.8e-35 2.9e-34 33.54 10 130 155 151 186 203 227 308 325 403 433 441 543 621 739 946 1091 1405 1799 2171 2748 4043 5515 5419 5302 5458 5436 5325 5491 5326 3742 2702 2171 1737 1461 1150 898 757 657 536 455 405 375 297 292 222 171 162 151 126 124
ga ga 98305 275.8 49 2.4e-33 3.8e-32 31.42 11 142 167 180 193 263 284 375 412 409 513 612 673 856 982 1176 1389 1768 2251 2584 3331 4658 6811 6654 6684 6615 6610 6604 6623 6165 4410 3285 2593 2156 1657 1328 1120 946 788 663 565 489 408 383 325 246 251 214 164 168 162
ta ta 73162 242.6 49 1.9e-27 3e-26 25.52 12 118 130 122 168 184 217 266 295 356 395 459 528 657 788 867 1054 1249 1605 2004 2417 3178 4564 5127 5082 5254 5055 5131 4954 4472 2942 2334 1959 1536 1266 1064 898 711 628 509 462 417 350 278 240 195 173 161 124 127 92
ac ac 77353 241.8 49 2.7e-27 4.3e-26 25.37 13 138 130 155 158 217 247 275 297 367 390 445 525 658 728 870 1074 1297 1681 2179 2637 3526 4940 5244 5215 5264 5219 5309 5178 5267 3530 2553 2084 1704 1400 1053 889 727 593 505 463 410 349 269 250 213 194 163 129 130 115
at at 89958 239.3 49 7.2e-27 1.2e-25 24.94 14 141 154 167 201 232 279 307 371 401 520 545 661 793 968 1119 1234 1568 2012 2357 2956 3884 5711 6226 6288 6318 6203 6252 6167 5574 3708 2908 2400 1982 1535 1276 1057 863 755 625 544 497 378 384 304 248 235 207 168 139 136
gt gt 78269 214.9 49 1.2e-22 1.9e-21 20.73 15 135 135 136 188 197 226 287 329 359 399 497 586 659 781 924 1157 1386 1803 2107 2638 3719 5413 5327 5276 5146 5389 5281 5248 5006 3419 2492 2057 1743 1321 1026 913 736 655 518 410 402 359 285 258 239 190 154 127 126 105
cg cg 21262 114.0 49 4.3e-07 6.9e-06 5.16 16 33 45 31 52 64 62 84 84 99 117 124 162 162 184 269 311 355 501 572 787 1009 1437 1433 1350 1404 1408 1431 1432 1367 1007 781 577 480 373 267 230 187 158 136 105 102 81 85 75 65 47 46 34 35 22 
 Host name	rsat
 Job started	2026-01-11.234208
 Job done	2026-01-11.234218
 Seconds	10.01
	user	10.01
	system	0.02
	cuser	0.01
;	csystem	0