rsync -ruptl /var/www/html/rsat/perl-scripts/lib/js /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x
rsync -ruptl /var/www/html/rsat/public_html/images/program_icons/matrix-clustering_icons /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_query_matrices.meme -from meme -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/Collection_1_input_motifs_processed_1.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/Collection_1_input_motifs_processed_1.tf -from tf -to transfac -prefix_id Collection_1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/Collection_1_input_motifs_processed.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/Collection_1_input_motifs_processed.tf > /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -split -from tf -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/motif
cat /var/www/html/rsat/R-scripts/matrix-clustering.R | /usr/bin/R --slave --no-save --no-restore --no-environ --args " infile = '/var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/pairwise_compa.tab'; hclust.method = 'average'; description.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab'; distance.table = '/var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/distance_table.tab'; alignment.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/alignment_table.tab'; verbosity = 0; metric = 'Ncor'; heatmap.color.palette = 'YlOrRd'; heatmap.color.classes = '9'; export.newick = 0; radial.only = 0; draw.heatmap = 1; draw.consensus = 0; pos.hclust.in.heatmap = 'column'; lthsp = 'Ncor_0.55_cor_0.7_'; out.prefix = '/var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering'; "
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_1_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_1_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_2_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_2_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_4_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_4_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_3_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_3_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_5_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_5_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_6_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_6_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_7_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_7_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_8_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_8_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_9_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_9_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_10_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_10_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_11_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_11_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_12_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_12_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_13_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_13_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_14_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_14_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_15_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_15_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_16_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_16_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_17_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_17_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_18_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_18_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_19_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_19_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_20_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_20_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/cluster_21_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/cluster_21_transfac_motifs.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m28_SSTYRTGYRQ_HTCS_Ara-2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_10/cluster_10_matrices_temp.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m3_SSTYRSVYRQ_HTCS_Ara-2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_11/cluster_11_matrices_temp.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m18_GTVYRPFYSK_HTCS_Rgu-2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m4_GTVYKPYYSK_HTCS_Rgu-2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m24_GTVYKPFYSK_HTCS_Rgu-2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m18_GTVYRPFYSK_HTCS_Rgu-2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m4_GTVYKPYYSK_HTCS_Rgu-2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m2_GSIYRPFYSK_HTCS_Rgu-2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m24_GTVYKPFYSK_HTCS_Rgu-2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m18_GTVYRPFYSK_HTCS_Rgu-2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m4_GTVYKPYYSK_HTCS_Rgu-2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_10/cluster_10_matrices_temp.tf -from tf -to tf -attr name cluster_10 -attr accession cluster_10 -set_attr merged_AC 'Collection_1:::SSTYRTGYRQ_HTCS_Ara-2' -set_attr merged_ID 'SSTYRTGYRQ_HTCS_Ara-2' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_10/cluster_10_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_11/cluster_11_matrices_temp.tf -from tf -to tf -attr name cluster_11 -attr accession cluster_11 -set_attr merged_AC 'Collection_1:::SSTYRSVYRQ_HTCS_Ara-2' -set_attr merged_ID 'SSTYRSVYRQ_HTCS_Ara-2' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_11/cluster_11_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/IC_test_2026-01-20.143329_4bJtXD
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/IC_test_2026-01-20.143329_qBr53S
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_11/cluster_11_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_10/cluster_10_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/IC_test_2026-01-20.143329_TgG20k
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m7_ATNFTSRYSK_HTCS_Hya_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices_temp.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m11_SRQYRRGTYK_HTCS_Man-2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices_temp.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices_temp.tf -from tf -to tf -attr name cluster_12 -attr accession cluster_12 -set_attr merged_AC 'Collection_1:::ATNFTSRYSK_HTCS_Hya' -set_attr merged_ID 'ATNFTSRYSK_HTCS_Hya' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices_temp.tf -from tf -to tf -attr name cluster_13 -attr accession cluster_13 -set_attr merged_AC 'Collection_1:::SRQYRRGTYK_HTCS_Man-2' -set_attr merged_ID 'SRQYRRGTYK_HTCS_Man-2' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m21_SRSYRKVTFK_HTCS_Man-1_3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices_temp.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m5_SSWRKTEHFS_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices_temp.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m22_SASYTISYST_HTCS_Ogl-2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices_temp.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices_temp.tf -from tf -to tf -attr name cluster_14 -attr accession cluster_14 -set_attr merged_AC 'Collection_1:::SRSYRKVTFK_HTCS_Man-1_3' -set_attr merged_ID 'SRSYRKVTFK_HTCS_Man-1_3' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices_temp.tf -from tf -to tf -attr name cluster_15 -attr accession cluster_15 -set_attr merged_AC 'Collection_1:::SSWRKTEHFS_RhaR' -set_attr merged_ID 'SSWRKTEHFS_RhaR' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices_temp.tf -from tf -to tf -attr name cluster_16 -attr accession cluster_16 -set_attr merged_AC 'Collection_1:::SASYTISYST_HTCS_Ogl-2' -set_attr merged_ID 'SASYTISYST_HTCS_Ogl-2' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m9_SSSYRPKYAT_HTCS_Aga-1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices_temp.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m23_SRVRQSNYSV_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices_temp.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m15_SSTYRTVYRQ_HTCS_Ara-2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_19/cluster_19_matrices_temp.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices_temp.tf -from tf -to tf -attr name cluster_18 -attr accession cluster_18 -set_attr merged_AC 'Collection_1:::SRVRQSNYSV_RhaR' -set_attr merged_ID 'SRVRQSNYSV_RhaR' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices_temp.tf -from tf -to tf -attr name cluster_17 -attr accession cluster_17 -set_attr merged_AC 'Collection_1:::SSSYRPKYAT_HTCS_Aga-1' -set_attr merged_ID 'SSSYRPKYAT_HTCS_Aga-1' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_19/cluster_19_matrices_temp.tf -from tf -to tf -attr name cluster_19 -attr accession cluster_19 -set_attr merged_AC 'Collection_1:::SSTYRTVYRQ_HTCS_Ara-2' -set_attr merged_ID 'SSTYRTVYRQ_HTCS_Ara-2' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_19/cluster_19_matrices.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_19/cluster_19_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m25_SKQYRHSYSK_HTCS_Pga_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_20/cluster_20_matrices_temp.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m17_SYHHRTSYIT_AdaA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_21/cluster_21_matrices_temp.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m10_SVQYRPSYAK_HTCS_Fru_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m20_SVQYRPSYTK_HTCS_Fru_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_20/cluster_20_matrices_temp.tf -from tf -to tf -attr name cluster_20 -attr accession cluster_20 -set_attr merged_AC 'Collection_1:::SKQYRHSYSK_HTCS_Pga' -set_attr merged_ID 'SKQYRHSYSK_HTCS_Pga' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_20/cluster_20_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_21/cluster_21_matrices_temp.tf -from tf -to tf -attr name cluster_21 -attr accession cluster_21 -set_attr merged_AC 'Collection_1:::SYHHRTSYIT_AdaA' -set_attr merged_ID 'SYHHRTSYIT_AdaA' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_21/cluster_21_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/IC_test_2026-01-20.143333_Kn2RHq
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_21/cluster_21_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_20/cluster_20_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m13_SSLNKPKYAR_HTCS_Ara-1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m16_SSLNKPKYTR_HTCS_Ara-1_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m19_PRTHRSNHST_RhaS_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m27_PRTNRSNYSS_RhaS_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/IC_test_2026-01-20.143334_ji1L49
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/IC_test_2026-01-20.143334_JJTk3y
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m1_SSNHLSSYAT_HTCS_Hep_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m6_SSNHLPSYAT_HTCS_Hep_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/IC_test_2026-01-20.143335_Qxw94a
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m12_SSRSHQLYSR_AraC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_6/cluster_6_matrices_temp.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m14_SSRAHQLYSR_AraC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_7/cluster_7_matrices_temp.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_7/cluster_7_matrices_temp.tf -from tf -to tf -attr name cluster_7 -attr accession cluster_7 -set_attr merged_AC 'Collection_1:::SSRAHQLYSR_AraC' -set_attr merged_ID 'SSRAHQLYSR_AraC' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_7/cluster_7_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_6/cluster_6_matrices_temp.tf -from tf -to tf -attr name cluster_6 -attr accession cluster_6 -set_attr merged_AC 'Collection_1:::SSRSHQLYSR_AraC' -set_attr merged_ID 'SSRSHQLYSR_AraC' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_6/cluster_6_matrices.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_7/cluster_7_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_6/cluster_6_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m8_GVQYRPSYTR_HTCS_Fru_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices_temp.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/Collection_1_m26_SSVFKPRYSK_HTCS_Rgu-1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_9/cluster_9_matrices_temp.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices_temp.tf -from tf -to tf -attr name cluster_8 -attr accession cluster_8 -set_attr merged_AC 'Collection_1:::GVQYRPSYTR_HTCS_Fru' -set_attr merged_ID 'GVQYRPSYTR_HTCS_Fru' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_9/cluster_9_matrices_temp.tf -from tf -to tf -attr name cluster_9 -attr accession cluster_9 -set_attr merged_AC 'Collection_1:::SSVFKPRYSK_HTCS_Rgu-1' -set_attr merged_ID 'SSVFKPRYSK_HTCS_Rgu-1' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_9/cluster_9_matrices.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_9/cluster_9_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
rm -r /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_pairwise_compa_logos
cp /var/www/html/rsat/public_html/templates_html/display_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_logo_tree.html
cp /var/www/html/rsat/public_html/templates_html/display_small_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_portable_logo_tree.html
mv /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_logo_tree.html
mv /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_portable_logo_tree.html
/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_html/pairwise_compa_matrix_descriptions.html
/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/distance_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/distance_table.html
/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/alignment_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/alignment_table.html
/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/clusters.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/clusters.html
/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/clusters_motif_names.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/clusters_motif_names.html
mv -f /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_portable_logo_tree.html
; matrix-clustering -v 1 -max_matrices 300 -matrix Collection_1 $RSAT/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_query_matrices.meme meme -hclust_method average -calc sum -title arac2 -metric_build_tree Ncor -lth w 10 -lth cor 0.7 -lth Ncor 0.55 -quick -label_in_tree name -return json,heatmap -o $RSAT/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering
; Program version 1.05
; Number of matrices 28
; Output files
; err_log /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_errors.txt
; all_concatenated_motifs /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
; central_motifs_IDs_temp /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_central_motifs_IDs_temporal.tab
; radial_tree /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_radial_tree.html
; heatmap_coverage_attributes /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/convergency_heatmap_attributes.tab
; pairwise_compa_html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_html/pairwise_compa.html
; small_logo_cladogram_html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_portable_logo_tree.html
; clusters_table_motif_names_html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/clusters_motif_names.html
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; consensus_cladogram_json /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_trees/tree.json
; int_align /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/intermediate_alignments.tab
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; dynamic_heatmap_html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_dynamic_heatmap.html
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; cluster_IDs_names /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_cluster_IDs.txt
; small_forest_export /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_small_forest.html
; dynamic_coverage_heatmap_html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_dynamic_coverage_heatmap.html
; Rlog /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_Rlog.txt
; pairwise_compa /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/pairwise_compa.tab
; summary /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_SUMMARY.html
; heatmap_coverage_d3 /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/convergency_heatmap_tab.tsv
; log /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_log.txt
; alignment_table /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/alignment_table.tab
; alignment_table_html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/alignment_table.html
; logo_cladogram_html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_logo_tree.html
; temp_html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_temporary.html
; clusters_table_html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/clusters.html
; distance_table_html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/distance_table.html
; archive /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_archive.zip
; clusters_table_motif_names /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/clusters_motif_names.tab
; nb_clusters_table /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/number_of_clusters.tab
; temp_html_2 /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_temporary_2.html
; temp_html_3 /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_temporary_3.html
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; reference_compa_html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_html/Root_vs_reference_collection_compa.html
; heatmap_collections_d3 /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/collection_heatmap_tab.tsv
; cluster_summary_table /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/clusters_summary_table.tab
; input_matrices /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data/input_motifs_processed.tf
; motif_richness_barplot_html /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_motif_richness_barplot.html
; percent_table /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/clusters_summary_percent_table.tab
; internal_nodes_attributes_table /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/internal_nodes_attributes.tab
; central_motifs /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_central_motifs_IDs.tab
; reference_compa /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_tables/Root_vs_reference_collection_compa.tab
; Directories
; data /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x/matrix-clustering_data
; output /var/www/html/rsat/public_html/tmp/www-data/2026/01/20/matrix-clustering_2026-01-20.143317_wUMQ9x
; Host name rsat
; Job started 2026-01-20.143318
; Job done 2026-01-20.143339
; Seconds 0.74
; user 0.74
; system 0.42
; cuser 28.62
; csystem 7.54