/var/www/html/rsat/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.210349_2026-01-20.210349_A3dhoj/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.210349_2026-01-20.210349_A3dhoj/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.210349_2026-01-20.210349_A3dhoj/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.210349_2026-01-20.210349_A3dhoj/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.210349_2026-01-20.210349_A3dhoj/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.210349_2026-01-20.210349_A3dhoj/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.210349_2026-01-20.210349_A3dhoj/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.210349_2026-01-20.210349_A3dhoj/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.210349_2026-01-20.210349_A3dhoj/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.210349_2026-01-20.210349_A3dhoj/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.210349_2026-01-20.210349_A3dhoj/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
 Matrices
	file1	22 matrices	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.210349_2026-01-20.210349_A3dhoj/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	10	7657
		file1	2	10	5087
		file1	3	10	2961
		file1	4	10	3909
		file1	5	11	11737
		file1	6	24	1225
		file1	7	24	935
		file1	8	24	1901
		file1	9	24	445
		file1	10	24	517
		file1	11	11	7428
		...	12 more matrices
	file2	22 matrices	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.210349_2026-01-20.210349_A3dhoj/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		10		7657
		file2		2		10		5087
		file2		3		10		2961
		file2		4		10		3909
		file2		5		11		11737
		file2		6		24		1225
		file2		7		24		935
		file2		8		24		1901
		file2		9		24		445
		file2		10		24		517
		file2		11		11		7428
		...	12 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m2 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m3 dyads_m3 dyads_m3 dyads_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_7nt_m2 positions_7nt_m2 positions_7nt_m2 positions_7nt_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_6nt_m3 positions_6nt_m3 positions_6nt_m3 positions_6nt_m3 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m3 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
positions_6nt_m4 positions_6nt_m4 positions_6nt_m4 positions_6nt_m4 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
dyads_m5 dyads_m5 dyads_m5 dyads_m5 1.000 1.000 22 22 22 22 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m1 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m1 dyads_m1 dyads_m1 dyads_m1 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 positions_6nt_m2 positions_6nt_m2 positions_6nt_m2 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
dyads_m2 dyads_m2 dyads_m2 dyads_m2 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m4 dyads_m4 dyads_m4 dyads_m4 1.000 1.000 22 22 22 22 1.0000 1.0000 1.0000 D 0
positions_7nt_m1 positions_7nt_m1 positions_7nt_m1 positions_7nt_m1 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_6nt_m5 positions_6nt_m5 positions_6nt_m5 positions_6nt_m5 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
positions_6nt_m1 positions_6nt_m1 positions_6nt_m1 positions_6nt_m1 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
dyads_m5 dyads_m4 dyads_m5 dyads_m4 0.978 0.978 22 22 22 22 1.0000 1.0000 1.0000 D 0
dyads_m4 dyads_m5 dyads_m4 dyads_m5 0.978 0.978 22 22 22 22 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m4 0.896 0.896 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m5 0.896 0.896 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_6nt_m3 positions_6nt_m2 positions_6nt_m3 positions_6nt_m2 0.837 0.837 24 24 24 24 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 positions_6nt_m3 positions_6nt_m2 positions_6nt_m3 0.837 0.837 24 24 24 24 1.0000 1.0000 1.0000 D 0
dyads_m3 oligos_6nt_mkv4_m1 dyads_m3 oligos_6nt_mkv4_m1 0.916 0.833 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv4_m1 dyads_m3 oligos_6nt_mkv4_m1 dyads_m3 0.916 0.833 10 11 10 11 0.9091 1.0000 0.9091 D -1
oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m5 0.816 0.816 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m2 0.816 0.816 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m3 0.808 0.808 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m2 0.808 0.808 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m1 dyads_m2 dyads_m1 dyads_m2 0.907 0.793 14 16 14 16 0.8750 1.0000 0.8750 D 0
dyads_m2 dyads_m1 dyads_m2 dyads_m1 0.907 0.793 16 14 14 16 0.8750 0.8750 1.0000 D 0
oligos_7nt_mkv5_m3 oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m3 oligos_6nt_mkv4_m5 0.791 0.791 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m3 oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m3 0.791 0.791 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m2 oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m2 oligos_6nt_mkv4_m5 0.786 0.786 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m2 oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m2 0.786 0.786 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_6nt_m3 positions_6nt_m5 positions_6nt_m3 positions_6nt_m5 0.763 0.763 24 24 24 24 1.0000 1.0000 1.0000 D 0
positions_6nt_m5 positions_6nt_m3 positions_6nt_m5 positions_6nt_m3 0.763 0.763 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m3 0.731 0.731 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m4 0.731 0.731 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m4 0.712 0.712 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m2 0.712 0.712 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 positions_6nt_m1 positions_6nt_m2 positions_6nt_m1 0.703 0.703 24 24 24 24 1.0000 1.0000 1.0000 D 0
positions_6nt_m1 positions_6nt_m2 positions_6nt_m1 positions_6nt_m2 0.703 0.703 24 24 24 24 1.0000 1.0000 1.0000 D 0
positions_6nt_m1 positions_6nt_m3 positions_6nt_m1 positions_6nt_m3 0.888 0.691 24 24 21 27 0.7778 0.8750 0.8750 D -3
positions_6nt_m3 positions_6nt_m1 positions_6nt_m3 positions_6nt_m1 0.888 0.691 24 24 21 27 0.7778 0.8750 0.8750 D 3
oligos_7nt_mkv5_m4 dyads_m1 oligos_7nt_mkv5_m4 dyads_m1 0.825 0.649 11 14 11 14 0.7857 1.0000 0.7857 R -2
dyads_m1 oligos_7nt_mkv5_m4 dyads_m1 oligos_7nt_mkv5_m4 0.825 0.649 14 11 11 14 0.7857 0.7857 1.0000 R 1
oligos_6nt_mkv4_m2 oligos_7nt_mkv5_m5 oligos_6nt_mkv4_m2 oligos_7nt_mkv5_m5 0.707 0.643 10 11 10 11 0.9091 1.0000 0.9091 D -1
oligos_7nt_mkv5_m5 oligos_6nt_mkv4_m2 oligos_7nt_mkv5_m5 oligos_6nt_mkv4_m2 0.707 0.643 11 10 10 11 0.9091 0.9091 1.0000 D 1
dyads_m1 oligos_7nt_mkv5_m5 dyads_m1 oligos_7nt_mkv5_m5 0.802 0.630 14 11 11 14 0.7857 0.7857 1.0000 R 1
oligos_7nt_mkv5_m5 dyads_m1 oligos_7nt_mkv5_m5 dyads_m1 0.802 0.630 11 14 11 14 0.7857 1.0000 0.7857 R -2
positions_6nt_m5 positions_6nt_m1 positions_6nt_m5 positions_6nt_m1 0.860 0.615 24 24 20 28 0.7143 0.8333 0.8333 D -4
positions_6nt_m1 positions_6nt_m5 positions_6nt_m1 positions_6nt_m5 0.860 0.615 24 24 20 28 0.7143 0.8333 0.8333 D 4
dyads_m2 positions_7nt_m1 dyads_m2 positions_7nt_m1 0.888 0.610 16 11 11 16 0.6875 0.6875 1.0000 D 5
positions_7nt_m1 dyads_m2 positions_7nt_m1 dyads_m2 0.888 0.610 11 16 11 16 0.6875 1.0000 0.6875 D -5
oligos_7nt_mkv5_m3 dyads_m1 oligos_7nt_mkv5_m3 dyads_m1 0.736 0.578 11 14 11 14 0.7857 1.0000 0.7857 R -2
dyads_m1 oligos_7nt_mkv5_m3 dyads_m1 oligos_7nt_mkv5_m3 0.736 0.578 14 11 11 14 0.7857 0.7857 1.0000 R 1
positions_7nt_m1 dyads_m1 positions_7nt_m1 dyads_m1 0.723 0.568 11 14 11 14 0.7857 1.0000 0.7857 D -2
dyads_m1 positions_7nt_m1 dyads_m1 positions_7nt_m1 0.723 0.568 14 11 11 14 0.7857 0.7857 1.0000 D 2
oligos_7nt_mkv5_m4 dyads_m2 oligos_7nt_mkv5_m4 dyads_m2 0.812 0.558 11 16 11 16 0.6875 1.0000 0.6875 R -4
dyads_m2 oligos_7nt_mkv5_m4 dyads_m2 oligos_7nt_mkv5_m4 0.812 0.558 16 11 11 16 0.6875 0.6875 1.0000 R 1
dyads_m2 oligos_7nt_mkv5_m5 dyads_m2 oligos_7nt_mkv5_m5 0.788 0.542 16 11 11 16 0.6875 0.6875 1.0000 R 1
oligos_7nt_mkv5_m5 dyads_m2 oligos_7nt_mkv5_m5 dyads_m2 0.788 0.542 11 16 11 16 0.6875 1.0000 0.6875 R -4
oligos_7nt_mkv5_m3 dyads_m2 oligos_7nt_mkv5_m3 dyads_m2 0.751 0.516 11 16 11 16 0.6875 1.0000 0.6875 R -4
dyads_m2 oligos_7nt_mkv5_m3 dyads_m2 oligos_7nt_mkv5_m3 0.751 0.516 16 11 11 16 0.6875 0.6875 1.0000 R 1
positions_7nt_m1 oligos_7nt_mkv5_m3 positions_7nt_m1 oligos_7nt_mkv5_m3 0.739 0.512 11 11 9 13 0.6923 0.8182 0.8182 R 2
oligos_7nt_mkv5_m3 positions_7nt_m1 oligos_7nt_mkv5_m3 positions_7nt_m1 0.739 0.512 11 11 9 13 0.6923 0.8182 0.8182 R 2
positions_7nt_m1 oligos_7nt_mkv5_m2 positions_7nt_m1 oligos_7nt_mkv5_m2 0.734 0.508 11 11 9 13 0.6923 0.8182 0.8182 R 2
oligos_7nt_mkv5_m2 positions_7nt_m1 oligos_7nt_mkv5_m2 positions_7nt_m1 0.734 0.508 11 11 9 13 0.6923 0.8182 0.8182 R 2
oligos_6nt_mkv4_m5 positions_7nt_m1 oligos_6nt_mkv4_m5 positions_7nt_m1 0.725 0.502 11 11 9 13 0.6923 0.8182 0.8182 R 2
positions_7nt_m1 oligos_6nt_mkv4_m5 positions_7nt_m1 oligos_6nt_mkv4_m5 0.725 0.502 11 11 9 13 0.6923 0.8182 0.8182 R 2
dyads_m2 positions_6nt_m2 dyads_m2 positions_6nt_m2 0.723 0.482 16 24 16 24 0.6667 1.0000 0.6667 D -3
positions_6nt_m2 dyads_m2 positions_6nt_m2 dyads_m2 0.723 0.482 24 16 16 24 0.6667 0.6667 1.0000 D 3
positions_6nt_m1 dyads_m2 positions_6nt_m1 dyads_m2 0.719 0.479 24 16 16 24 0.6667 0.6667 1.0000 D 0
dyads_m2 positions_6nt_m1 dyads_m2 positions_6nt_m1 0.719 0.479 16 24 16 24 0.6667 1.0000 0.6667 D 0
positions_6nt_m2 positions_6nt_m5 positions_6nt_m2 positions_6nt_m5 0.845 0.464 24 24 17 31 0.5484 0.7083 0.7083 D 7
positions_6nt_m5 positions_6nt_m2 positions_6nt_m5 positions_6nt_m2 0.845 0.464 24 24 17 31 0.5484 0.7083 0.7083 D -7
positions_7nt_m1 positions_7nt_m2 positions_7nt_m1 positions_7nt_m2 0.702 0.401 11 11 8 14 0.5714 0.7273 0.7273 D 3
positions_7nt_m2 positions_7nt_m1 positions_7nt_m2 positions_7nt_m1 0.702 0.401 11 11 8 14 0.5714 0.7273 0.7273 D -3
 Host name	rsat
 Job started	2026-01-20.210851
 Job done	2026-01-20.210927
 Seconds	5.48
	user	5.49
	system	1.82
	cuser	26.04
;	csystem	3.43