/var/www/html/rsat/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.211306_2026-01-20.211306_nF5eNg/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.211306_2026-01-20.211306_nF5eNg/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.211306_2026-01-20.211306_nF5eNg/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.211306_2026-01-20.211306_nF5eNg/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.211306_2026-01-20.211306_nF5eNg/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.211306_2026-01-20.211306_nF5eNg/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.211306_2026-01-20.211306_nF5eNg/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.211306_2026-01-20.211306_nF5eNg/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.211306_2026-01-20.211306_nF5eNg/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.211306_2026-01-20.211306_nF5eNg/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.211306_2026-01-20.211306_nF5eNg/results/discovered_motifs/peak-motifs_motifs_disco_compa
 Matrices
	file1	23 matrices	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.211306_2026-01-20.211306_nF5eNg/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	10	6987
		file1	2	10	2788
		file1	3	10	4865
		file1	4	10	4461
		file1	5	10	4612
		file1	6	24	1777
		file1	7	24	1334
		file1	8	24	460
		file1	9	24	1872
		file1	10	24	1065
		file1	11	11	8226
		...	13 more matrices
	file2	23 matrices	$RSAT/public_html/tmp/www-data/2026/01/20/peak-motifs.2026-01-20.211306_2026-01-20.211306_nF5eNg/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		10		6987
		file2		2		10		2788
		file2		3		10		4865
		file2		4		10		4461
		file2		5		10		4612
		file2		6		24		1777
		file2		7		24		1334
		file2		8		24		460
		file2		9		24		1872
		file2		10		24		1065
		file2		11		11		8226
		...	13 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_7nt_m3 positions_7nt_m3 positions_7nt_m3 positions_7nt_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
positions_7nt_m2 positions_7nt_m2 positions_7nt_m2 positions_7nt_m2 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m3 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m2 dyads_m2 dyads_m2 dyads_m2 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
positions_6nt_m4 positions_6nt_m4 positions_6nt_m4 positions_6nt_m4 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
dyads_m1 dyads_m1 dyads_m1 dyads_m1 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m4 dyads_m4 dyads_m4 dyads_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_6nt_m5 positions_6nt_m5 positions_6nt_m5 positions_6nt_m5 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m1 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_7nt_m1 positions_7nt_m1 positions_7nt_m1 positions_7nt_m1 1.000 1.000 20 20 20 20 1.0000 1.0000 1.0000 D 0
positions_6nt_m3 positions_6nt_m3 positions_6nt_m3 positions_6nt_m3 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
positions_6nt_m1 positions_6nt_m1 positions_6nt_m1 positions_6nt_m1 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m2 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m5 dyads_m5 dyads_m5 dyads_m5 1.000 1.000 20 20 20 20 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 positions_6nt_m2 positions_6nt_m2 positions_6nt_m2 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
dyads_m3 dyads_m3 dyads_m3 dyads_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m5 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m5 0.896 0.896 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m3 0.896 0.896 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_6nt_m4 positions_6nt_m5 positions_6nt_m4 positions_6nt_m5 0.873 0.873 24 24 24 24 1.0000 1.0000 1.0000 D 0
positions_6nt_m5 positions_6nt_m4 positions_6nt_m5 positions_6nt_m4 0.873 0.873 24 24 24 24 1.0000 1.0000 1.0000 D 0
dyads_m3 oligos_6nt_mkv4_m1 dyads_m3 oligos_6nt_mkv4_m1 0.904 0.822 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv4_m1 dyads_m3 oligos_6nt_mkv4_m1 dyads_m3 0.904 0.822 10 11 10 11 0.9091 1.0000 0.9091 D -1
positions_6nt_m5 positions_6nt_m1 positions_6nt_m5 positions_6nt_m1 0.815 0.815 24 24 24 24 1.0000 1.0000 1.0000 D 0
positions_6nt_m1 positions_6nt_m5 positions_6nt_m1 positions_6nt_m5 0.815 0.815 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m2 0.813 0.813 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m3 0.813 0.813 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m1 0.810 0.810 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m2 0.810 0.810 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_6nt_m1 positions_6nt_m4 positions_6nt_m1 positions_6nt_m4 0.807 0.807 24 24 24 24 1.0000 1.0000 1.0000 D 0
positions_6nt_m4 positions_6nt_m1 positions_6nt_m4 positions_6nt_m1 0.807 0.807 24 24 24 24 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 positions_6nt_m4 positions_6nt_m2 positions_6nt_m4 0.933 0.790 24 24 22 26 0.8462 0.9167 0.9167 D 2
positions_6nt_m4 positions_6nt_m2 positions_6nt_m4 positions_6nt_m2 0.933 0.790 24 24 22 26 0.8462 0.9167 0.9167 D -2
dyads_m1 dyads_m2 dyads_m1 dyads_m2 0.887 0.776 14 16 14 16 0.8750 1.0000 0.8750 D 0
dyads_m2 dyads_m1 dyads_m2 dyads_m1 0.887 0.776 16 14 14 16 0.8750 0.8750 1.0000 D 0
positions_6nt_m2 positions_6nt_m1 positions_6nt_m2 positions_6nt_m1 0.775 0.775 24 24 24 24 1.0000 1.0000 1.0000 D 0
positions_6nt_m1 positions_6nt_m2 positions_6nt_m1 positions_6nt_m2 0.775 0.775 24 24 24 24 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 positions_6nt_m5 positions_6nt_m2 positions_6nt_m5 0.764 0.764 24 24 24 24 1.0000 1.0000 1.0000 D 0
positions_6nt_m5 positions_6nt_m2 positions_6nt_m5 positions_6nt_m2 0.764 0.764 24 24 24 24 1.0000 1.0000 1.0000 D 0
positions_7nt_m1 positions_6nt_m1 positions_7nt_m1 positions_6nt_m1 0.902 0.751 20 24 20 24 0.8333 1.0000 0.8333 D -3
positions_6nt_m1 positions_7nt_m1 positions_6nt_m1 positions_7nt_m1 0.902 0.751 24 20 20 24 0.8333 0.8333 1.0000 D 3
positions_6nt_m4 positions_7nt_m1 positions_6nt_m4 positions_7nt_m1 0.887 0.740 24 20 20 24 0.8333 0.8333 1.0000 D 4
positions_7nt_m1 positions_6nt_m4 positions_7nt_m1 positions_6nt_m4 0.887 0.740 20 24 20 24 0.8333 1.0000 0.8333 D -4
oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m1 0.732 0.732 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m5 0.732 0.732 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m3 dyads_m4 dyads_m3 dyads_m4 0.793 0.727 11 12 11 12 0.9167 1.0000 0.9167 D -1
dyads_m4 dyads_m3 dyads_m4 dyads_m3 0.793 0.727 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m2 0.713 0.713 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m5 0.713 0.713 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_6nt_m5 positions_7nt_m1 positions_6nt_m5 positions_7nt_m1 0.849 0.708 24 20 20 24 0.8333 0.8333 1.0000 D 4
positions_7nt_m1 positions_6nt_m5 positions_7nt_m1 positions_6nt_m5 0.849 0.708 20 24 20 24 0.8333 1.0000 0.8333 D -4
positions_6nt_m2 positions_7nt_m1 positions_6nt_m2 positions_7nt_m1 0.839 0.699 24 20 20 24 0.8333 0.8333 1.0000 D 1
positions_7nt_m1 positions_6nt_m2 positions_7nt_m1 positions_6nt_m2 0.839 0.699 20 24 20 24 0.8333 1.0000 0.8333 D -1
dyads_m1 oligos_7nt_mkv5_m5 dyads_m1 oligos_7nt_mkv5_m5 0.827 0.650 14 11 11 14 0.7857 0.7857 1.0000 R 1
oligos_7nt_mkv5_m5 dyads_m1 oligos_7nt_mkv5_m5 dyads_m1 0.827 0.650 11 14 11 14 0.7857 1.0000 0.7857 R -2
oligos_7nt_mkv5_m5 oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m5 oligos_6nt_mkv4_m5 0.704 0.640 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m5 oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m5 0.704 0.640 10 11 10 11 0.9091 1.0000 0.9091 R 0
oligos_7nt_mkv5_m3 oligos_6nt_mkv4_m4 oligos_7nt_mkv5_m3 oligos_6nt_mkv4_m4 0.702 0.638 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv4_m4 oligos_7nt_mkv5_m3 oligos_6nt_mkv4_m4 oligos_7nt_mkv5_m3 0.702 0.638 10 11 10 11 0.9091 1.0000 0.9091 D -1
oligos_7nt_mkv5_m3 dyads_m1 oligos_7nt_mkv5_m3 dyads_m1 0.804 0.632 11 14 11 14 0.7857 1.0000 0.7857 R -2
dyads_m1 oligos_7nt_mkv5_m3 dyads_m1 oligos_7nt_mkv5_m3 0.804 0.632 14 11 11 14 0.7857 0.7857 1.0000 R 1
positions_7nt_m1 positions_7nt_m2 positions_7nt_m1 positions_7nt_m2 0.749 0.624 20 24 20 24 0.8333 1.0000 0.8333 D 0
positions_7nt_m2 positions_7nt_m1 positions_7nt_m2 positions_7nt_m1 0.749 0.624 24 20 20 24 0.8333 0.8333 1.0000 D 0
oligos_6nt_mkv4_m2 positions_7nt_m3 oligos_6nt_mkv4_m2 positions_7nt_m3 0.722 0.601 10 12 10 12 0.8333 1.0000 0.8333 D 0
positions_7nt_m3 oligos_6nt_mkv4_m2 positions_7nt_m3 oligos_6nt_mkv4_m2 0.722 0.601 12 10 10 12 0.8333 0.8333 1.0000 R 2
dyads_m1 oligos_7nt_mkv5_m1 dyads_m1 oligos_7nt_mkv5_m1 0.741 0.582 14 11 11 14 0.7857 0.7857 1.0000 R 1
oligos_7nt_mkv5_m1 dyads_m1 oligos_7nt_mkv5_m1 dyads_m1 0.741 0.582 11 14 11 14 0.7857 1.0000 0.7857 R -2
oligos_7nt_mkv5_m5 dyads_m2 oligos_7nt_mkv5_m5 dyads_m2 0.810 0.557 11 16 11 16 0.6875 1.0000 0.6875 R -4
dyads_m2 oligos_7nt_mkv5_m5 dyads_m2 oligos_7nt_mkv5_m5 0.810 0.557 16 11 11 16 0.6875 0.6875 1.0000 R 1
dyads_m2 oligos_7nt_mkv5_m3 dyads_m2 oligos_7nt_mkv5_m3 0.787 0.541 16 11 11 16 0.6875 0.6875 1.0000 R 1
oligos_7nt_mkv5_m3 dyads_m2 oligos_7nt_mkv5_m3 dyads_m2 0.787 0.541 11 16 11 16 0.6875 1.0000 0.6875 R -4
oligos_7nt_mkv5_m1 dyads_m2 oligos_7nt_mkv5_m1 dyads_m2 0.752 0.517 11 16 11 16 0.6875 1.0000 0.6875 R -4
dyads_m2 oligos_7nt_mkv5_m1 dyads_m2 oligos_7nt_mkv5_m1 0.752 0.517 16 11 11 16 0.6875 0.6875 1.0000 R 1
positions_6nt_m5 positions_6nt_m3 positions_6nt_m5 positions_6nt_m3 0.717 0.512 24 24 20 28 0.7143 0.8333 0.8333 R -4
positions_6nt_m3 positions_6nt_m5 positions_6nt_m3 positions_6nt_m5 0.717 0.512 24 24 20 28 0.7143 0.8333 0.8333 R -4
positions_6nt_m3 positions_6nt_m1 positions_6nt_m3 positions_6nt_m1 0.829 0.498 24 24 18 30 0.6000 0.7500 0.7500 R -6
positions_6nt_m1 positions_6nt_m3 positions_6nt_m1 positions_6nt_m3 0.829 0.498 24 24 18 30 0.6000 0.7500 0.7500 R -6
dyads_m2 positions_6nt_m1 dyads_m2 positions_6nt_m1 0.729 0.486 16 24 16 24 0.6667 1.0000 0.6667 D 0
positions_6nt_m1 dyads_m2 positions_6nt_m1 dyads_m2 0.729 0.486 24 16 16 24 0.6667 0.6667 1.0000 D 0
positions_7nt_m2 positions_6nt_m2 positions_7nt_m2 positions_6nt_m2 0.793 0.476 24 24 18 30 0.6000 0.7500 0.7500 D -6
positions_6nt_m2 positions_7nt_m2 positions_6nt_m2 positions_7nt_m2 0.793 0.476 24 24 18 30 0.6000 0.7500 0.7500 D 6
positions_7nt_m2 positions_6nt_m4 positions_7nt_m2 positions_6nt_m4 0.714 0.468 24 24 19 29 0.6552 0.7917 0.7917 D -5
positions_6nt_m4 positions_7nt_m2 positions_6nt_m4 positions_7nt_m2 0.714 0.468 24 24 19 29 0.6552 0.7917 0.7917 D 5
positions_7nt_m1 positions_6nt_m3 positions_7nt_m1 positions_6nt_m3 0.867 0.448 20 24 15 29 0.5172 0.7500 0.6250 R -9
positions_6nt_m3 positions_7nt_m1 positions_6nt_m3 positions_7nt_m1 0.867 0.448 24 20 15 29 0.5172 0.6250 0.7500 R -5
positions_7nt_m1 dyads_m2 positions_7nt_m1 dyads_m2 0.717 0.405 20 16 13 23 0.5652 0.6500 0.8125 D -3
dyads_m2 positions_7nt_m1 dyads_m2 positions_7nt_m1 0.717 0.405 16 20 13 23 0.5652 0.8125 0.6500 D 3
positions_6nt_m2 positions_6nt_m3 positions_6nt_m2 positions_6nt_m3 0.802 0.401 24 24 16 32 0.5000 0.6667 0.6667 R -8
positions_6nt_m3 positions_6nt_m2 positions_6nt_m3 positions_6nt_m2 0.802 0.401 24 24 16 32 0.5000 0.6667 0.6667 R -8
 Host name	rsat
 Job started	2026-01-20.211743
 Job done	2026-01-20.211822
 Seconds	5.49
	user	5.49
	system	1.92
	cuser	28.61
;	csystem	3.63