; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/01/22/oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/01/22/oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2026/01/22/oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2026/01/22/oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 6 5 10 0 0 0 1 23 0 0 3 3 8
c 6 6 3 4 25 1 0 2 0 27 0 8 7
g 8 4 5 4 0 0 0 1 0 0 4 6 4
t 7 12 9 19 2 26 26 1 27 0 20 10 8
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m1_rc.png
;
a 70 73 99 106 106 106 104 106 104 99 73 68
c 9 7 1 2 1 2 2 1 4 4 10 14
g 20 19 8 2 3 3 4 3 2 4 14 12
t 12 12 3 1 1 0 1 1 1 4 14 17
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m2_rc.png
;
a 12 3 0 2 15 1 0 1 14 1 2 0 10 1
c 0 1 2 11 0 0 0 15 1 0 1 14 2 3
g 3 2 14 1 0 1 15 0 0 0 11 2 1 0
t 1 10 0 2 1 14 1 0 1 15 2 0 3 12
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m3_rc.png
;
a 9 5 10 2 0 0 0 28 0 1 16 7 11 13
c 6 8 6 5 27 1 1 0 0 28 0 6 4 3
g 6 2 3 4 2 0 1 1 0 0 4 7 4 5
t 8 14 10 18 0 28 27 0 29 0 9 9 10 8
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m4_rc.png
;
a 2 1 0 1 0 0 0 0 0 0 0 3
c 2 4 7 7 0 8 0 8 0 1 3 1
g 1 3 1 0 8 0 8 0 7 7 4 2
t 3 0 0 0 0 0 0 0 1 0 1 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m5_rc.png
;
a 8 11 2 1 1 0 31 2 0 9 7 10
c 8 7 16 34 0 0 0 0 35 0 10 5
g 4 7 6 0 1 0 1 0 0 5 6 8
t 15 10 11 0 33 35 3 33 0 21 12 12
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m6_rc.png
;
a 17 17 40 1 52 5 50 50 4 20 19 23
c 11 11 5 0 0 2 0 1 0 13 9 7
g 13 13 0 51 0 3 2 1 49 16 12 13
t 13 13 9 2 2 44 2 2 1 5 14 11
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m7_rc.png
;
a 4 5 11 0 11 0 0 0 3 3
c 2 1 0 11 0 0 11 0 2 4
g 2 4 0 0 0 0 0 0 2 1
t 3 1 0 0 0 11 0 11 4 3
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m8_rc.png
;
a 11 11 13 4 36 0 36 36 0 21 10 17 7
c 7 7 10 1 0 2 0 0 1 6 5 3 7
g 5 13 3 31 0 1 0 0 34 7 6 9 9
t 13 5 10 0 0 33 0 0 1 2 15 7 13
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m9_rc.png
;
a 1 1 0 0 0 0 0 4 0 0 1 0
c 3 1 3 0 0 0 0 0 4 4 2 0
g 0 1 0 4 4 4 0 0 0 0 0 2
t 0 1 1 0 0 0 4 0 0 0 1 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m10_rc.png
;
a 10 13 12 13 15 4 41 0 39 40 1 26 12 20 8
c 10 6 7 7 10 1 0 2 1 0 1 6 6 3 8
g 9 7 5 14 4 36 0 2 1 1 38 7 8 10 9
t 12 15 17 7 12 0 0 37 0 0 1 2 15 8 16
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m11_rc.png
;
a 1 0 0 3 0 0 0 0 4 0 1 2
c 1 0 4 0 4 0 0 4 0 4 1 0
g 2 4 0 1 0 4 4 0 0 0 1 1
t 0 0 0 0 0 0 0 0 0 0 1 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.122011_kgLBQ5_pssm_count_matrices_logo_m12_rc.png
;
; Host name rsat
; Job started 2026-01-22.122018
; Job done 2026-01-22.122022
; Seconds 0.17
; user 0.17
; system 0.1
; cuser 2.96
; csystem 0.5