; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/01/22/oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/01/22/oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2026/01/22/oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2026/01/22/oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 1 2 1 2 1 10 10 0 0 8 2 7 3 5
c 3 3 1 0 1 0 0 0 0 0 6 1 2 1
g 1 2 1 6 0 0 0 0 0 1 0 1 3 3
t 5 3 7 2 8 0 0 10 10 1 2 1 2 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m1_rc.png
;
a 0 0 0 1 1 3 3 0 0 3 0 3 0 0 2 0
c 1 2 0 0 0 0 0 0 0 0 2 0 0 1 0 1
g 1 0 0 1 0 0 0 0 0 0 0 0 3 2 0 0
t 1 1 3 1 2 0 0 3 3 0 1 0 0 0 1 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m2_rc.png
;
a 4 1 0 0 0 4 0 0 4 4 1 0
c 0 1 0 0 0 0 0 4 0 0 1 0
g 0 1 0 0 4 0 0 0 0 0 1 0
t 0 1 4 4 0 0 4 0 0 0 1 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m3_rc.png
;
a 4 4 7 1 0 0 0 0 0 7 4 5
c 0 1 0 0 0 0 0 0 0 1 0 0
g 0 1 0 0 6 0 0 0 0 0 4 1
t 4 2 1 7 2 8 8 8 8 0 0 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m4_rc.png
;
a 1 0 0 0 0 0 0 0 0 4 1 1
c 1 0 4 3 4 0 3 0 4 0 1 0
g 0 1 0 0 0 0 0 0 0 0 1 1
t 2 3 0 1 0 4 1 4 0 0 1 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m5_rc.png
;
a 3 2 0 3 0 0 0 0 0 0 3 3
c 0 0 4 0 0 0 0 0 1 0 0 0
g 0 1 0 0 0 0 0 0 3 4 0 0
t 1 1 0 1 4 4 4 4 0 0 1 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m6_rc.png
;
a 0 2 4 4 4 0 2 1 0 0 4 4 1 0
c 1 0 0 0 0 4 0 0 0 0 0 0 0 1
g 3 1 0 0 0 0 2 0 4 3 0 0 1 0
t 0 1 0 0 0 0 0 3 0 1 0 0 2 3
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m7_rc.png
;
a 1 2 3 0 1 3 3 0 3 0 3 1
c 1 1 0 3 0 0 0 0 0 0 0 1
g 1 0 0 0 2 0 0 3 0 3 0 0
t 0 0 0 0 0 0 0 0 0 0 0 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m8_rc.png
;
a 1 1 2 0 0 0 0 0 0 2 0 0
c 0 1 0 0 2 0 0 2 0 0 1 2
g 0 0 0 2 0 0 0 0 0 0 1 0
t 1 0 0 0 0 2 2 0 2 0 0 0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/22//oligo-analysis_2026-01-22.213006_UAW7rG_pssm_count_matrices_logo_m9_rc.png
;
; Host name rsat
; Job started 2026-01-22.213009
; Job done 2026-01-22.213012
; Seconds 0.14
; user 0.14
; system 0.11
; cuser 2.04
; csystem 0.36