/var/www/html/rsat/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083823_2026-01-22.083823_ivLZA5/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083823_2026-01-22.083823_ivLZA5/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title hupA48h_hupA_sensitive -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083823_2026-01-22.083823_ivLZA5/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083823_2026-01-22.083823_ivLZA5/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083823_2026-01-22.083823_ivLZA5/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	493
	Sum of sequence lengths      	202951
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	411
	Possible positions           	202458
 Oligonucleotide statistics:
	Total occurrences    	199497
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	202458
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	6	102
	2	-24	[-479,-460]	-469.5	9	149
	3	-23	[-459,-440]	-449.5	12	216
	4	-22	[-439,-420]	-429.5	16	286
	5	-21	[-419,-400]	-409.5	23	374
	6	-20	[-399,-380]	-389.5	25	480
	7	-19	[-379,-360]	-369.5	29	553
	8	-18	[-359,-340]	-349.5	34	613
	9	-17	[-339,-320]	-329.5	40	738
	10	-16	[-319,-300]	-309.5	52	890
	11	-15	[-299,-280]	-289.5	67	1196
	12	-14	[-279,-260]	-269.5	84	1527
	13	-13	[-259,-240]	-249.5	116	1987
	14	-12	[-239,-220]	-229.5	149	2652
	15	-11	[-219,-200]	-209.5	208	3570
	16	-10	[-199,-180]	-189.5	270	4785
	17	-9	[-179,-160]	-169.5	339	6087
	18	-8	[-159,-140]	-149.5	415	7588
	19	-7	[-139,-120]	-129.5	467	8897
	20	-6	[-119,-100]	-109.5	493	9740
	21	-5	[-99,-80]	-89.5	493	9860
	22	-4	[-79,-60]	-69.5	493	9860
	23	-3	[-59,-40]	-49.5	493	9860
	24	-2	[-39,-20]	-29.5	493	9860
	25	-1	[-19,0]	-9.5	493	9860
	26	0	[1,20]	10.5	493	9860
	27	1	[21,40]	30.5	493	9860
	28	2	[41,60]	50.5	493	9860
	29	3	[61,80]	70.5	493	9860
	30	4	[81,100]	90.5	493	9860
	31	5	[101,120]	110.5	493	9687
	32	6	[121,140]	130.5	463	8790
	33	7	[141,160]	150.5	407	7432
	34	8	[161,180]	170.5	335	5951
	35	9	[181,200]	190.5	264	4659
	36	10	[201,220]	210.5	200	3447
	37	11	[221,240]	230.5	146	2576
	38	12	[241,260]	250.5	113	1931
	39	13	[261,280]	270.5	83	1488
	40	14	[281,300]	290.5	67	1167
	41	15	[301,320]	310.5	52	870
	42	16	[321,340]	330.5	40	723
	43	17	[341,360]	350.5	33	606
	44	18	[361,380]	370.5	29	545
	45	19	[381,400]	390.5	25	474
	46	20	[401,420]	410.5	23	360
	47	21	[421,440]	430.5	16	278
	48	22	[441,460]	450.5	11	208
	49	23	[461,480]	470.5	9	141
	50	24	[481,500]	490.5	5	95

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
aa aa 3703 167.8 49 6.6e-15 1.1e-13 12.98 1 5 4 9 2 9 12 10 9 21 16 27 29 44 58 81 79 74 118 118 174 162 177 193 248 278 210 171 178 167 168 189 115 105 97 78 55 45 50 23 22 20 10 9 12 8 6 4 2 2 0
tt tt 3923 109.0 49 1.9e-06 3e-05 4.52 2 1 2 1 3 7 12 6 17 21 18 20 32 48 46 75 93 100 126 170 154 167 172 173 201 234 273 239 200 195 193 171 149 138 110 74 78 43 31 31 21 16 16 9 7 15 6 3 6 0 0
cc cc 22045 67.0 49 4.5e-02 0.71 0.15 3 10 15 17 32 33 43 57 54 69 98 132 144 214 265 394 502 697 856 1018 1063 1181 1118 1081 1039 1105 992 1045 1058 1095 1077 1108 957 826 628 489 362 256 203 167 106 77 86 64 58 45 37 38 21 8 5
gg gg 21938 61.1 49 1.2e-01 1.9 -0.27 4 10 19 17 33 51 42 50 72 83 97 132 165 234 301 401 523 656 811 972 1104 1049 1071 1076 1046 943 1060 1094 1026 1032 1099 1016 977 878 666 544 385 265 210 164 131 71 65 71 57 47 40 28 31 12 11
gt gt 11746 56.4 49 2.2e-01 3.5 -0.54 5 4 7 8 9 29 25 24 43 45 50 67 102 118 149 214 267 353 437 498 545 527 529 567 589 594 638 635 600 585 534 543 530 439 328 272 214 136 107 77 64 50 36 37 33 23 15 20 17 7 6
ct ct 10133 56.0 49 2.3e-01 3.7 -0.57 6 1 5 9 10 12 22 34 27 40 42 63 78 98 149 172 269 325 376 486 454 506 506 530 456 519 476 466 464 468 493 496 416 353 304 221 192 120 92 70 74 48 48 38 28 28 17 10 10 6 6
ac ac 11983 55.4 49 2.4e-01 3.9 -0.59 7 6 6 14 24 14 24 33 28 37 50 62 75 100 138 191 296 355 475 500 574 593 598 603 608 651 590 589 589 584 559 569 542 432 342 252 175 182 106 85 62 50 49 40 38 27 21 16 10 11 8
ag ag 9648 45.7 49 6.1e-01 9.7 -0.99 8 7 7 11 11 25 21 36 35 40 46 66 71 97 135 156 247 278 373 407 466 466 443 443 488 432 502 485 455 488 422 473 434 344 311 223 155 128 95 70 54 46 26 21 26 26 23 12 7 10 5
cg cg 27855 45.2 49 6.3e-01 10 -1.00 9 9 17 23 34 46 62 67 79 97 117 132 188 248 348 476 612 860 1069 1267 1382 1372 1382 1346 1335 1312 1320 1339 1373 1374 1416 1336 1265 1053 830 657 471 352 262 204 142 105 100 79 73 60 58 43 31 21 11
gc gc 23645 45.2 49 6.3e-01 10 -1.00 10 10 17 20 32 38 52 68 62 87 105 129 170 216 308 407 536 735 888 1098 1176 1169 1151 1094 1144 1080 1082 1109 1156 1186 1239 1127 1035 888 730 578 402 293 237 160 119 96 80 70 67 60 49 34 26 18 12
tc tc 12793 41.3 49 7.8e-01 12 -1.09 11 3 5 14 10 15 36 29 41 40 52 68 104 127 169 233 309 403 488 590 613 637 654 661 574 660 609 620 612 587 609 625 537 466 359 288 241 150 116 98 80 60 48 39 30 26 19 15 10 8 6
ca ca 10467 37.9 49 8.7e-01 14 -1.15 12 7 6 19 21 12 27 25 32 31 44 68 74 97 115 192 251 314 400 456 513 529 506 514 540 534 505 497 536 495 498 498 439 379 297 242 158 142 106 67 57 49 32 34 31 26 18 11 5 10 8
tg tg 10799 37.4 49 8.9e-01 14 -1.15 13 3 8 9 14 22 27 32 33 39 47 66 96 107 153 190 267 322 399 457 504 468 489 517 550 530 555 552 541 542 534 500 478 386 320 245 189 132 93 73 61 51 33 39 35 32 12 18 17 6 6
at at 3838 36.4 49 9.1e-01 15 -1.16 14 1 3 9 8 8 18 9 12 8 14 21 34 41 48 78 100 110 140 162 188 183 206 200 187 164 170 179 206 178 191 188 158 130 116 97 60 48 32 27 27 18 8 9 12 11 6 5 2 5 3
ga ga 12878 35.3 49 9.3e-01 15 -1.17 15 5 7 15 18 25 31 47 37 45 52 71 85 117 185 213 317 377 506 532 634 608 627 651 636 605 652 626 624 629 602 635 588 473 391 283 190 185 112 98 75 54 42 30 34 35 27 20 11 11 5
ta ta 2103 29.8 49 9.9e-01 16 -1.20 16 0 1 1 5 8 6 6 7 9 10 12 20 21 25 37 57 68 66 85 85 103 99 107 111 99 108 114 114 103 82 101 89 69 62 48 40 26 19 14 12 9 4 14 4 5 6 1 2 6 3 
 Host name	rsat
 Job started	2026-01-22.083828
 Job done	2026-01-22.083829
 Seconds	1.2
	user	1.2
	system	0.03
	cuser	0
;	csystem	0