/var/www/html/rsat/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083843_2026-01-22.083843_1j8mZJ/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083843_2026-01-22.083843_1j8mZJ/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title hupA48h-constitutive -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083843_2026-01-22.083843_1j8mZJ/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083843_2026-01-22.083843_1j8mZJ/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083843_2026-01-22.083843_1j8mZJ/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	711
	Sum of sequence lengths      	298399
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	419
	Possible positions           	297688
 Oligonucleotide statistics:
	Total occurrences    	294566
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	297688
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	10	182
	2	-24	[-479,-460]	-469.5	13	229
	3	-23	[-459,-440]	-449.5	19	315
	4	-22	[-439,-420]	-429.5	25	436
	5	-21	[-419,-400]	-409.5	33	568
	6	-20	[-399,-380]	-389.5	36	686
	7	-19	[-379,-360]	-369.5	43	791
	8	-18	[-359,-340]	-349.5	48	897
	9	-17	[-339,-320]	-329.5	66	1169
	10	-16	[-319,-300]	-309.5	84	1446
	11	-15	[-299,-280]	-289.5	112	1955
	12	-14	[-279,-260]	-269.5	147	2590
	13	-13	[-259,-240]	-249.5	192	3392
	14	-12	[-239,-220]	-229.5	237	4300
	15	-11	[-219,-200]	-209.5	325	5640
	16	-10	[-199,-180]	-189.5	404	7312
	17	-9	[-179,-160]	-169.5	490	8973
	18	-8	[-159,-140]	-149.5	592	10809
	19	-7	[-139,-120]	-129.5	669	12769
	20	-6	[-119,-100]	-109.5	711	14016
	21	-5	[-99,-80]	-89.5	711	14220
	22	-4	[-79,-60]	-69.5	711	14220
	23	-3	[-59,-40]	-49.5	711	14220
	24	-2	[-39,-20]	-29.5	711	14220
	25	-1	[-19,0]	-9.5	711	14220
	26	0	[1,20]	10.5	711	14220
	27	1	[21,40]	30.5	711	14220
	28	2	[41,60]	50.5	711	14220
	29	3	[61,80]	70.5	711	14220
	30	4	[81,100]	90.5	711	14220
	31	5	[101,120]	110.5	711	13933
	32	6	[121,140]	130.5	664	12598
	33	7	[141,160]	150.5	580	10596
	34	8	[161,180]	170.5	484	8795
	35	9	[181,200]	190.5	396	7151
	36	10	[201,220]	210.5	316	5455
	37	11	[221,240]	230.5	229	4203
	38	12	[241,260]	250.5	189	3313
	39	13	[261,280]	270.5	145	2515
	40	14	[281,300]	290.5	109	1899
	41	15	[301,320]	310.5	82	1412
	42	16	[321,340]	330.5	66	1131
	43	17	[341,360]	350.5	47	887
	44	18	[361,380]	370.5	42	778
	45	19	[381,400]	390.5	36	678
	46	20	[401,420]	410.5	33	551
	47	21	[421,440]	430.5	25	424
	48	22	[441,460]	450.5	18	302
	49	23	[461,480]	470.5	13	221
	50	24	[481,500]	490.5	9	171

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
aa aa 5580 171.7 49 1.6e-15 2.5e-14 13.60 1 0 3 11 9 12 18 14 17 28 25 41 46 66 87 106 109 128 179 196 269 257 254 301 355 387 310 275 294 245 244 275 192 185 145 107 76 65 57 43 40 29 22 16 12 9 7 5 4 2 3
tt tt 5733 162.2 49 4.9e-14 7.8e-13 12.11 2 4 2 2 7 6 12 10 24 39 28 44 45 67 70 105 120 125 171 231 232 275 249 256 301 335 402 332 286 278 273 253 234 184 168 123 110 80 50 48 39 30 19 10 14 17 8 5 6 3 1
cc cc 32872 78.5 49 4.7e-03 0.075 1.13 3 16 19 28 40 56 67 89 92 139 169 208 254 381 468 643 760 1050 1175 1472 1575 1680 1677 1585 1521 1585 1433 1512 1523 1545 1566 1617 1390 1195 972 785 609 435 393 304 183 139 123 86 80 68 61 44 25 20 15
gg gg 32261 76.4 49 7.4e-03 0.12 0.93 4 14 29 30 51 86 57 77 98 135 157 211 296 378 490 645 813 1016 1196 1363 1545 1493 1507 1541 1454 1411 1577 1533 1486 1502 1621 1484 1417 1212 957 831 600 451 375 262 221 136 108 91 76 73 53 38 35 15 14
ac ac 17666 68.6 49 3.4e-02 0.54 0.27 5 10 11 15 31 23 32 45 37 66 83 115 138 165 227 312 423 530 660 776 819 868 871 853 914 963 826 854 839 854 823 802 756 624 531 406 293 264 186 138 120 67 76 55 44 38 31 21 12 10 9
tg tg 15636 61.8 49 1.0e-01 1.7 -0.22 6 9 18 12 22 34 40 39 53 57 75 99 144 187 234 292 402 458 561 639 714 687 707 731 778 762 835 801 797 761 760 678 666 557 451 346 271 216 160 133 109 72 59 46 45 41 19 27 21 3 8
gt gt 17236 61.4 49 1.1e-01 1.8 -0.24 7 12 13 16 21 38 38 45 65 69 88 104 158 197 246 326 421 506 606 711 804 787 769 803 849 848 918 879 888 841 766 798 763 585 479 414 330 244 174 151 117 91 55 50 46 25 21 27 15 9 10
ct ct 14927 61.3 49 1.1e-01 1.8 -0.25 8 5 10 14 14 21 27 45 47 49 62 105 129 174 244 273 369 428 533 671 662 722 723 773 706 754 700 678 678 705 703 732 596 514 444 345 287 204 167 131 122 86 67 47 39 39 34 14 21 9 5
ca ca 15471 61.1 49 1.2e-01 1.8 -0.27 9 12 9 20 33 13 39 39 43 54 77 98 131 159 179 305 386 475 563 657 726 772 746 760 756 808 717 759 729 720 763 707 655 546 431 373 257 222 190 128 94 68 63 53 40 35 24 13 5 10 9
gc gc 34948 58.9 49 1.6e-01 2.5 -0.40 10 20 33 36 52 63 83 92 99 131 172 215 310 409 501 650 860 1111 1289 1530 1682 1683 1676 1609 1610 1581 1585 1614 1619 1712 1795 1628 1497 1300 1063 890 644 485 412 275 181 153 142 97 86 78 71 49 37 24 14
at at 5605 56.9 49 2.1e-01 3.3 -0.52 11 5 4 9 9 8 23 12 19 17 27 34 54 65 82 125 171 161 200 220 254 244 286 271 270 233 263 292 308 258 280 248 228 192 173 131 96 84 63 41 37 23 15 14 18 16 8 6 1 6 1
cg cg 41214 51.7 49 3.7e-01 5.9 -0.77 12 26 33 39 54 81 92 99 115 165 193 259 363 454 575 774 980 1293 1549 1780 2002 1977 1990 1913 1961 1872 1872 1929 1959 2018 2007 1927 1790 1521 1271 1039 793 588 449 343 222 178 151 113 100 78 84 60 37 28 18
ta ta 3115 50.5 49 4.1e-01 6.6 -0.82 13 0 0 5 4 7 7 10 9 14 21 15 28 35 46 61 86 84 93 135 130 144 151 158 168 165 155 162 171 159 129 153 140 88 81 68 57 43 27 16 20 23 7 13 4 4 7 2 3 6 1
tc tc 18999 49.6 49 4.5e-01 7.2 -0.86 14 13 10 19 18 27 46 50 64 67 79 129 175 213 284 376 471 554 688 818 882 905 923 955 879 917 880 887 911 888 858 943 784 652 557 460 387 286 204 186 140 110 66 59 49 38 34 20 13 16 9
ag ag 14331 41.6 49 7.7e-01 12 -1.09 15 7 6 19 24 31 39 48 45 53 79 111 118 175 211 244 381 400 529 621 677 691 645 671 678 636 720 697 682 701 646 698 629 496 443 342 252 199 163 118 89 82 53 43 37 32 20 20 12 10 8
ga ga 18972 37.2 49 8.9e-01 14 -1.15 16 9 9 20 27 42 46 57 50 66 91 147 151 207 296 337 476 554 717 828 903 881 894 916 919 863 927 916 940 913 867 890 798 705 589 442 333 277 192 158 125 85 65 54 48 47 29 33 15 10 8 
 Host name	rsat
 Job started	2026-01-22.083849
 Job done	2026-01-22.083850
 Seconds	1.75
	user	1.75
	system	0.02
	cuser	0
;	csystem	0