One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083843_2026-01-22.083843_1j8mZJ/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083843_2026-01-22.083843_1j8mZJ/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift1 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=17; shift=1; ncol=18; -ssscCCAACTGCcsbss ; Alignment reference a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 75 59 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 92 143 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 107 98 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95 70 44

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/10; ncol2=17; w=0; offset=0; strand=D; shift=1; score= 1; -ssscCCAACTGCcsbss ; cor=; Ncor= a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 75 59 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 92 143 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 107 98 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95 70 44

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=2/10; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.862155; ssssCCCAACTGCCGss- ; cor=; Ncor= a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 56 0 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 64 0 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 64 0 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45 45 0

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=3/10; ncol2=18; w=-1; offset=-1; strand=D; shift=0; score=0.852092; ssssCCCAACTCCCssss ; cor=; Ncor= a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 55 34 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 66 107 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 67 66 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46 50 31

oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4_rc; m=4/10; ncol2=17; w=0; offset=0; strand=R; shift=1; score=0.840451; -sssgCCAACTCCCgsss ; cor=; Ncor= a 0 62 51 18 23 15 2 288 271 2 13 20 9 12 18 25 71 56 c 0 95 135 196 58 265 274 14 23 309 9 251 295 254 67 133 82 138 g 0 100 85 96 220 29 47 20 23 13 28 43 19 38 211 108 93 85 t 0 70 56 17 26 18 4 5 10 3 277 13 4 23 31 61 81 48

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=5/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.796611; -ssscCCAACTCCCss-- ; cor=; Ncor= a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 0 0 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 0 0 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 0 0 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67 0 0

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=6/10; ncol2=18; w=-1; offset=-1; strand=D; shift=0; score=0.772513; sscgCCGAACTCCCssvs ; cor=; Ncor= a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 98 44 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 100 187 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 110 112 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50 75 40

oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=7/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.72747; -ssGcCCAACTCGyss-- ; cor=; Ncor= a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 0 0 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 0 0 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 0 0 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65 0 0

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3; m=8/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.722819; -ssscCGAACTCCcss-- ; cor=; Ncor= a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 0 0 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 0 0 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 0 0 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64 0 0

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5_rc; m=9/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.703627; -sssggCAACTCCcss-- ; cor=; Ncor= a 0 90 69 30 56 31 3 402 393 2 15 24 11 34 59 28 0 0 c 0 130 169 156 97 88 383 8 17 414 8 349 389 276 151 175 0 0 g 0 129 114 227 236 270 45 15 15 15 32 46 31 64 152 173 0 0 t 0 88 85 24 48 48 6 12 12 6 382 18 6 63 75 61 0 0

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5; m=10/10; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.701098; scsgCCCAACTCGgcsk- ; cor=; Ncor= a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 60 0 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 71 0 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 85 0 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51 77 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift1 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssGcCCAACTCGyss ; Alignment reference a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65

oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssGcCCAACTCGyss ; cor=; Ncor= a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=2/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.898923; -ssscCCAACTCCCss ; cor=; Ncor= a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5; m=3/10; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.86251; scsgCCCAACTCGgcs ; cor=; Ncor= a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3; m=4/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.83626; -ssscCGAACTCCcss ; cor=; Ncor= a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5_rc; m=5/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.766993; -sssggCAACTCCcss ; cor=; Ncor= a 0 90 69 30 56 31 3 402 393 2 15 24 11 34 59 28 c 0 130 169 156 97 88 383 8 17 414 8 349 389 276 151 175 g 0 129 114 227 236 270 45 15 15 15 32 46 31 64 152 173 t 0 88 85 24 48 48 6 12 12 6 382 18 6 63 75 61

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=6/10; ncol2=17; w=0; offset=0; strand=D; shift=1; score=0.72747; -ssscCCAACTGCcsb ; cor=; Ncor= a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=7/10; ncol2=18; w=-1; offset=-1; strand=D; shift=0; score=0.707928; ssssCCCAACTCCCss ; cor=; Ncor= a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46

oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4_rc; m=8/10; ncol2=17; w=0; offset=0; strand=R; shift=1; score=0.684475; -sssgCCAACTCCCgs ; cor=; Ncor= a 0 62 51 18 23 15 2 288 271 2 13 20 9 12 18 25 c 0 95 135 196 58 265 274 14 23 309 9 251 295 254 67 133 g 0 100 85 96 220 29 47 20 23 13 28 43 19 38 211 108 t 0 70 56 17 26 18 4 5 10 3 277 13 4 23 31 61

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=9/10; ncol2=18; w=-1; offset=-1; strand=D; shift=0; score=0.677945; sscgCCGAACTCCCss ; cor=; Ncor= a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=10/10; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.660644; ssssCCCAACTGCCGs ; cor=; Ncor= a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=18; shift=0; ncol=18; sscgCCGAACTCCCssvs ; Alignment reference a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 98 44 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 100 187 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 110 112 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50 75 40

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/10; ncol2=18; w=0; offset=0; strand=D; shift=0; score= 1; sscgCCGAACTCCCssvs ; cor=; Ncor= a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 98 44 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 100 187 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 110 112 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50 75 40

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=2/10; ncol2=18; w=0; offset=0; strand=D; shift=0; score=0.906309; ssssCCCAACTCCCssss ; cor=; Ncor= a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 55 34 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 66 107 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 67 66 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46 50 31

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3; m=3/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.823043; -ssscCGAACTCCcss-- ; cor=; Ncor= a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 0 0 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 0 0 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 0 0 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64 0 0

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=4/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score=0.781003; ssssCCCAACTGCCGss- ; cor=; Ncor= a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 56 0 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 64 0 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 64 0 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45 45 0

oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4_rc; m=5/10; ncol2=17; w=0; offset=1; strand=R; shift=1; score=0.773777; -sssgCCAACTCCCgsss ; cor=; Ncor= a 0 62 51 18 23 15 2 288 271 2 13 20 9 12 18 25 71 56 c 0 95 135 196 58 265 274 14 23 309 9 251 295 254 67 133 82 138 g 0 100 85 96 220 29 47 20 23 13 28 43 19 38 211 108 93 85 t 0 70 56 17 26 18 4 5 10 3 277 13 4 23 31 61 81 48

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=6/10; ncol2=17; w=0; offset=1; strand=D; shift=1; score=0.772513; -ssscCCAACTGCcsbss ; cor=; Ncor= a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 75 59 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 92 143 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 107 98 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95 70 44

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=7/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.753507; -ssscCCAACTCCCss-- ; cor=; Ncor= a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 0 0 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 0 0 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 0 0 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67 0 0

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5; m=8/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score=0.718753; scsgCCCAACTCGgcsk- ; cor=; Ncor= a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 60 0 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 71 0 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 85 0 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51 77 0

oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=9/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.677945; -ssGcCCAACTCGyss-- ; cor=; Ncor= a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 0 0 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 0 0 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 0 0 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65 0 0

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5_rc; m=10/10; ncol2=15; w=0; offset=1; strand=R; shift=1; score=0.636511; -sssggCAACTCCcss-- ; cor=; Ncor= a 0 90 69 30 56 31 3 402 393 2 15 24 11 34 59 28 0 0 c 0 130 169 156 97 88 383 8 17 414 8 349 389 276 151 175 0 0 g 0 129 114 227 236 270 45 15 15 15 32 46 31 64 152 173 0 0 t 0 88 85 24 48 48 6 12 12 6 382 18 6 63 75 61 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift2 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift2 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=15; shift=2; ncol=17; --ssgGGAGTTGccsss ; Alignment reference a 0 0 61 75 63 6 18 382 6 12 12 6 48 48 24 85 88 c 0 0 173 152 64 31 46 32 15 15 15 45 270 236 227 114 129 g 0 0 175 151 276 389 349 8 414 17 8 383 88 97 156 169 130 t 0 0 28 59 34 11 24 15 2 393 402 3 31 56 30 69 90

oligos_6nt_test_vs_ctrl_m5_shift2 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=2; score= 1; --ssgGGAGTTGccsss ; cor=; Ncor= a 0 0 61 75 63 6 18 382 6 12 12 6 48 48 24 85 88 c 0 0 173 152 64 31 46 32 15 15 15 45 270 236 227 114 129 g 0 0 175 151 276 389 349 8 414 17 8 383 88 97 156 169 130 t 0 0 28 59 34 11 24 15 2 393 402 3 31 56 30 69 90

oligos_6nt_test_vs_ctrl_m1_rc_shift2 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1_rc; m=2/10; ncol2=15; w=0; offset=0; strand=R; shift=2; score=0.894074; --ssGGGAGTTGGgsss ; cor=; Ncor= a 0 0 67 57 48 6 12 340 1 8 6 3 28 39 23 64 87 c 0 0 154 132 42 42 29 23 12 34 8 76 31 67 227 107 106 g 0 0 138 158 268 321 326 10 367 20 12 302 307 240 105 163 107 t 0 0 23 35 24 13 15 9 2 320 356 1 16 36 27 48 82

oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4; m=3/10; ncol2=17; w=-2; offset=-2; strand=D; shift=0; score=0.795746; ssscGGGAGTTGGcsss ; cor=; Ncor= a 48 81 61 31 23 4 13 277 3 10 5 4 18 26 17 56 70 c 85 93 108 211 38 19 43 28 13 23 20 47 29 220 96 85 100 g 138 82 133 67 254 295 251 9 309 23 14 274 265 58 196 135 95 t 56 71 25 18 12 9 20 13 2 271 288 2 15 23 18 51 62

oligos_6nt_test_vs_ctrl_m4_rc_shift2 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4_rc; m=4/10; ncol2=15; w=0; offset=0; strand=R; shift=2; score=0.766993; --ssrCGAGTTGGgCss ; cor=; Ncor= a 0 0 65 51 133 8 9 420 5 10 7 1 14 48 27 84 107 c 0 0 196 113 109 322 46 14 16 40 8 110 27 87 305 131 115 g 0 0 159 242 154 102 389 13 426 35 9 334 397 270 90 187 133 t 0 0 28 42 52 16 4 1 1 363 424 3 10 43 26 46 93

oligos_6nt_test_vs_ctrl_m3_rc_shift2 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3_rc; m=5/10; ncol2=15; w=0; offset=0; strand=R; shift=2; score=0.759683; --ssgGGAGTTCGgsss ; cor=; Ncor= a 0 0 64 58 64 11 16 468 2 17 24 3 22 58 39 78 128 c 0 0 243 192 70 85 74 24 38 9 8 455 46 64 309 172 148 g 0 0 177 229 341 406 424 16 477 20 14 62 444 350 141 219 138 t 0 0 38 43 47 20 8 14 5 476 476 2 10 50 33 53 108

oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1_rc; m=6/10; ncol2=18; w=-2; offset=-2; strand=R; shift=0; score=0.72422; ssssGGGAGTTGGGsss ; cor=; Ncor= a 31 50 46 15 14 2 11 209 1 9 4 2 18 18 15 34 52 c 66 67 81 148 10 18 27 14 8 25 5 44 19 32 140 98 61 g 107 66 91 60 203 211 193 7 227 10 12 190 191 173 70 81 71 t 34 55 20 15 11 7 7 8 2 194 217 2 10 15 13 25 54

oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2_rc; m=7/10; ncol2=17; w=-2; offset=-2; strand=R; shift=0; score=0.703627; ssvsgGCAGTTGGgsss ; cor=; Ncor= a 44 70 95 30 32 9 14 301 3 9 6 4 22 31 15 54 72 c 98 107 119 124 61 66 251 17 16 12 10 57 28 65 207 117 111 g 143 92 104 139 232 253 65 15 322 17 6 275 287 226 103 131 86 t 59 75 26 51 19 16 14 11 3 306 322 8 7 22 19 42 75

oligos_7nt_test_vs_ctrl_m3_rc_shift1 (oligos_7nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3_rc; m=8/10; ncol2=17; w=-1; offset=-1; strand=R; shift=1; score=0.67658; -ssCGGCAGTTGGGsss ; cor=; Ncor= a 0 45 45 12 12 1 11 191 4 3 4 4 12 18 8 32 56 c 0 64 76 161 23 23 177 18 10 24 12 47 24 30 147 105 67 g 0 64 86 46 188 201 35 9 214 16 8 175 188 170 61 70 69 t 0 56 22 10 6 4 6 11 1 186 205 3 5 11 13 22 37

oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2_rc; m=9/10; ncol2=18; w=-2; offset=-2; strand=R; shift=0; score=0.636511; sbssGGGAGTTCGGcgs ; cor=; Ncor= a 40 75 50 26 37 8 10 342 4 15 20 3 15 37 19 45 93 c 112 110 173 228 34 48 51 20 19 16 14 325 35 55 255 95 109 g 187 100 130 111 282 316 315 12 356 19 11 54 323 262 84 209 108 t 44 98 30 18 30 11 7 9 4 333 338 1 10 29 25 34 73

oligos_7nt_test_vs_ctrl_m5_rc_shift1 (oligos_7nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5_rc; m=10/10; ncol2=17; w=-1; offset=-1; strand=R; shift=1; score=0.621284; -msgcCGAGTTGGGcsg ; cor=; Ncor= a 0 77 51 28 42 7 2 270 6 7 4 2 9 15 16 44 69 c 0 85 122 49 160 232 31 9 7 30 7 68 17 42 192 130 69 g 0 71 96 197 69 47 255 10 279 30 8 218 259 219 65 107 91 t 0 60 24 19 22 7 5 4 1 226 274 5 8 17 20 12 64

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=17; shift=0; ncol=17; scsgCCCAACTCGgcsk ; Alignment reference a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 60 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 71 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 85 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51 77

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score= 1; scsgCCCAACTCGgcsk ; cor=; Ncor= a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 60 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 71 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 85 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51 77

oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4; m=2/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.86251; -ssGcCCAACTCGyss- ; cor=; Ncor= a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 0 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 0 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 0 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65 0

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1; m=3/10; ncol2=18; w=0; offset=0; strand=D; shift=0; score=0.756185; ssssCCCAACTCCCsss ; cor=; Ncor= a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 55 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 66 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 67 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46 50

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=4/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.749381; -ssscCCAACTCCCss- ; cor=; Ncor= a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 0 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 0 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 0 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67 0

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2; m=5/10; ncol2=18; w=0; offset=0; strand=D; shift=0; score=0.718753; sscgCCGAACTCCCssv ; cor=; Ncor= a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 98 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 100 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 110 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50 75

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3; m=6/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score=0.708906; ssssCCCAACTGCCGss ; cor=; Ncor= a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 56 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 64 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 64 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45 45

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2; m=7/10; ncol2=17; w=0; offset=1; strand=D; shift=1; score=0.701098; -ssscCCAACTGCcsbs ; cor=; Ncor= a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 75 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 92 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 107 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95 70

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3; m=8/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.700474; -ssscCGAACTCCcss- ; cor=; Ncor= a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 0 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 0 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 0 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64 0

oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4_rc; m=9/10; ncol2=17; w=0; offset=1; strand=R; shift=1; score=0.626957; -sssgCCAACTCCCgss ; cor=; Ncor= a 0 62 51 18 23 15 2 288 271 2 13 20 9 12 18 25 71 c 0 95 135 196 58 265 274 14 23 309 9 251 295 254 67 133 82 g 0 100 85 96 220 29 47 20 23 13 28 43 19 38 211 108 93 t 0 70 56 17 26 18 4 5 10 3 277 13 4 23 31 61 81

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5_rc; m=10/10; ncol2=15; w=0; offset=1; strand=R; shift=1; score=0.621284; -sssggCAACTCCcss- ; cor=; Ncor= a 0 90 69 30 56 31 3 402 393 2 15 24 11 34 59 28 0 c 0 130 169 156 97 88 383 8 17 414 8 349 389 276 151 175 0 g 0 129 114 227 236 270 45 15 15 15 32 46 31 64 152 173 0 t 0 88 85 24 48 48 6 12 12 6 382 18 6 63 75 61 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift1 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssscCGAACTCCcss ; Alignment reference a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssscCGAACTCCcss ; cor=; Ncor= a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=2/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.90395; -ssscCCAACTCCCss ; cor=; Ncor= a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67

oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4; m=3/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.83626; -ssGcCCAACTCGyss ; cor=; Ncor= a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2; m=4/10; ncol2=18; w=-1; offset=-1; strand=D; shift=0; score=0.823043; sscgCCGAACTCCCss ; cor=; Ncor= a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5_rc; m=5/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.759683; -sssggCAACTCCcss ; cor=; Ncor= a 0 90 69 30 56 31 3 402 393 2 15 24 11 34 59 28 c 0 130 169 156 97 88 383 8 17 414 8 349 389 276 151 175 g 0 129 114 227 236 270 45 15 15 15 32 46 31 64 152 173 t 0 88 85 24 48 48 6 12 12 6 382 18 6 63 75 61

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1; m=6/10; ncol2=18; w=-1; offset=-1; strand=D; shift=0; score=0.738456; ssssCCCAACTCCCss ; cor=; Ncor= a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2; m=7/10; ncol2=17; w=0; offset=0; strand=D; shift=1; score=0.722819; -ssscCCAACTGCcsb ; cor=; Ncor= a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=8/10; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.708576; ssssCCCAACTGCCGs ; cor=; Ncor= a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45

oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4_rc; m=9/10; ncol2=17; w=0; offset=0; strand=R; shift=1; score=0.704677; -sssgCCAACTCCCgs ; cor=; Ncor= a 0 62 51 18 23 15 2 288 271 2 13 20 9 12 18 25 c 0 95 135 196 58 265 274 14 23 309 9 251 295 254 67 133 g 0 100 85 96 220 29 47 20 23 13 28 43 19 38 211 108 t 0 70 56 17 26 18 4 5 10 3 277 13 4 23 31 61

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m5; m=10/10; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.700474; scsgCCCAACTCGgcs ; cor=; Ncor= a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=18; shift=0; ncol=18; ssssCCCAACTCCCssss ; Alignment reference a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 55 34 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 66 107 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 67 66 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46 50 31

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/10; ncol2=18; w=0; offset=0; strand=D; shift=0; score= 1; ssssCCCAACTCCCssss ; cor=; Ncor= a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 55 34 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 66 107 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 67 66 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46 50 31

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=2/10; ncol2=18; w=0; offset=0; strand=D; shift=0; score=0.906309; sscgCCGAACTCCCssvs ; cor=; Ncor= a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 98 44 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 100 187 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 110 112 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50 75 40

oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4_rc; m=3/10; ncol2=17; w=0; offset=1; strand=R; shift=1; score=0.868982; -sssgCCAACTCCCgsss ; cor=; Ncor= a 0 62 51 18 23 15 2 288 271 2 13 20 9 12 18 25 71 56 c 0 95 135 196 58 265 274 14 23 309 9 251 295 254 67 133 82 138 g 0 100 85 96 220 29 47 20 23 13 28 43 19 38 211 108 93 85 t 0 70 56 17 26 18 4 5 10 3 277 13 4 23 31 61 81 48

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=4/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score=0.864074; ssssCCCAACTGCCGss- ; cor=; Ncor= a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 56 0 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 64 0 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 64 0 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45 45 0

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=5/10; ncol2=17; w=0; offset=1; strand=D; shift=1; score=0.852092; -ssscCCAACTGCcsbss ; cor=; Ncor= a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 75 59 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 92 143 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 107 98 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95 70 44

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=6/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.817746; -ssscCCAACTCCCss-- ; cor=; Ncor= a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 0 0 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 0 0 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 0 0 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67 0 0

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5; m=7/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score=0.756185; scsgCCCAACTCGgcsk- ; cor=; Ncor= a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 60 0 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 71 0 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 85 0 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51 77 0

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3; m=8/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.738456; -ssscCGAACTCCcss-- ; cor=; Ncor= a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 0 0 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 0 0 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 0 0 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64 0 0

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5_rc; m=9/10; ncol2=15; w=0; offset=1; strand=R; shift=1; score=0.72422; -sssggCAACTCCcss-- ; cor=; Ncor= a 0 90 69 30 56 31 3 402 393 2 15 24 11 34 59 28 0 0 c 0 130 169 156 97 88 383 8 17 414 8 349 389 276 151 175 0 0 g 0 129 114 227 236 270 45 15 15 15 32 46 31 64 152 173 0 0 t 0 88 85 24 48 48 6 12 12 6 382 18 6 63 75 61 0 0

oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=10/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.707928; -ssGcCCAACTCGyss-- ; cor=; Ncor= a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 0 0 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 0 0 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 0 0 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=17; shift=0; ncol=17; ssscGGGAGTTGGcsss ; Alignment reference a 48 81 61 31 23 4 13 277 3 10 5 4 18 26 17 56 70 c 85 93 108 211 38 19 43 28 13 23 20 47 29 220 96 85 100 g 138 82 133 67 254 295 251 9 309 23 14 274 265 58 196 135 95 t 56 71 25 18 12 9 20 13 2 271 288 2 15 23 18 51 62

oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score= 1; ssscGGGAGTTGGcsss ; cor=; Ncor= a 48 81 61 31 23 4 13 277 3 10 5 4 18 26 17 56 70 c 85 93 108 211 38 19 43 28 13 23 20 47 29 220 96 85 100 g 138 82 133 67 254 295 251 9 309 23 14 274 265 58 196 135 95 t 56 71 25 18 12 9 20 13 2 271 288 2 15 23 18 51 62

oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1_rc; m=2/10; ncol2=18; w=0; offset=0; strand=R; shift=0; score=0.868982; ssssGGGAGTTGGGsss ; cor=; Ncor= a 31 50 46 15 14 2 11 209 1 9 4 2 18 18 15 34 52 c 66 67 81 148 10 18 27 14 8 25 5 44 19 32 140 98 61 g 107 66 91 60 203 211 193 7 227 10 12 190 191 173 70 81 71 t 34 55 20 15 11 7 7 8 2 194 217 2 10 15 13 25 54

oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2_rc; m=3/10; ncol2=17; w=0; offset=0; strand=R; shift=0; score=0.840451; ssvsgGCAGTTGGgsss ; cor=; Ncor= a 44 70 95 30 32 9 14 301 3 9 6 4 22 31 15 54 72 c 98 107 119 124 61 66 251 17 16 12 10 57 28 65 207 117 111 g 143 92 104 139 232 253 65 15 322 17 6 275 287 226 103 131 86 t 59 75 26 51 19 16 14 11 3 306 322 8 7 22 19 42 75

oligos_6nt_test_vs_ctrl_m1_rc_shift2 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1_rc; m=4/10; ncol2=15; w=0; offset=2; strand=R; shift=2; score=0.808716; --ssGGGAGTTGGgsss ; cor=; Ncor= a 0 0 67 57 48 6 12 340 1 8 6 3 28 39 23 64 87 c 0 0 154 132 42 42 29 23 12 34 8 76 31 67 227 107 106 g 0 0 138 158 268 321 326 10 367 20 12 302 307 240 105 163 107 t 0 0 23 35 24 13 15 9 2 320 356 1 16 36 27 48 82

oligos_6nt_test_vs_ctrl_m5_shift2 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5; m=5/10; ncol2=15; w=0; offset=2; strand=D; shift=2; score=0.795746; --ssgGGAGTTGccsss ; cor=; Ncor= a 0 0 61 75 63 6 18 382 6 12 12 6 48 48 24 85 88 c 0 0 173 152 64 31 46 32 15 15 15 45 270 236 227 114 129 g 0 0 175 151 276 389 349 8 414 17 8 383 88 97 156 169 130 t 0 0 28 59 34 11 24 15 2 393 402 3 31 56 30 69 90

oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2_rc; m=6/10; ncol2=18; w=0; offset=0; strand=R; shift=0; score=0.773777; sbssGGGAGTTCGGcgs ; cor=; Ncor= a 40 75 50 26 37 8 10 342 4 15 20 3 15 37 19 45 93 c 112 110 173 228 34 48 51 20 19 16 14 325 35 55 255 95 109 g 187 100 130 111 282 316 315 12 356 19 11 54 323 262 84 209 108 t 44 98 30 18 30 11 7 9 4 333 338 1 10 29 25 34 73

oligos_7nt_test_vs_ctrl_m3_rc_shift1 (oligos_7nt_test_vs_ctrl_m3_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3_rc; m=7/10; ncol2=17; w=0; offset=1; strand=R; shift=1; score=0.740313; -ssCGGCAGTTGGGsss ; cor=; Ncor= a 0 45 45 12 12 1 11 191 4 3 4 4 12 18 8 32 56 c 0 64 76 161 23 23 177 18 10 24 12 47 24 30 147 105 67 g 0 64 86 46 188 201 35 9 214 16 8 175 188 170 61 70 69 t 0 56 22 10 6 4 6 11 1 186 205 3 5 11 13 22 37

oligos_6nt_test_vs_ctrl_m3_rc_shift2 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3_rc; m=8/10; ncol2=15; w=0; offset=2; strand=R; shift=2; score=0.704677; --ssgGGAGTTCGgsss ; cor=; Ncor= a 0 0 64 58 64 11 16 468 2 17 24 3 22 58 39 78 128 c 0 0 243 192 70 85 74 24 38 9 8 455 46 64 309 172 148 g 0 0 177 229 341 406 424 16 477 20 14 62 444 350 141 219 138 t 0 0 38 43 47 20 8 14 5 476 476 2 10 50 33 53 108

oligos_6nt_test_vs_ctrl_m4_rc_shift2 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4_rc; m=9/10; ncol2=15; w=0; offset=2; strand=R; shift=2; score=0.684475; --ssrCGAGTTGGgCss ; cor=; Ncor= a 0 0 65 51 133 8 9 420 5 10 7 1 14 48 27 84 107 c 0 0 196 113 109 322 46 14 16 40 8 110 27 87 305 131 115 g 0 0 159 242 154 102 389 13 426 35 9 334 397 270 90 187 133 t 0 0 28 42 52 16 4 1 1 363 424 3 10 43 26 46 93

oligos_7nt_test_vs_ctrl_m5_rc_shift1 (oligos_7nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5_rc; m=10/10; ncol2=17; w=0; offset=1; strand=R; shift=1; score=0.626957; -msgcCGAGTTGGGcsg ; cor=; Ncor= a 0 77 51 28 42 7 2 270 6 7 4 2 9 15 16 44 69 c 0 85 122 49 160 232 31 9 7 30 7 68 17 42 192 130 69 g 0 71 96 197 69 47 255 10 279 30 8 218 259 219 65 107 91 t 0 60 24 19 22 7 5 4 1 226 274 5 8 17 20 12 64

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=17; shift=0; ncol=17; ssssCCCAACTGCCGss ; Alignment reference a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 56 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 64 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 64 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45 45

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score= 1; ssssCCCAACTGCCGss ; cor=; Ncor= a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 56 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 64 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 64 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45 45

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1; m=2/10; ncol2=18; w=0; offset=0; strand=D; shift=0; score=0.864074; ssssCCCAACTCCCsss ; cor=; Ncor= a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 55 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 66 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 67 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46 50

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2; m=3/10; ncol2=17; w=0; offset=1; strand=D; shift=1; score=0.862155; -ssscCCAACTGCcsbs ; cor=; Ncor= a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 75 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 92 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 107 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95 70

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2; m=4/10; ncol2=18; w=0; offset=0; strand=D; shift=0; score=0.781003; sscgCCGAACTCCCssv ; cor=; Ncor= a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 98 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 100 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 110 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50 75

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=5/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.771844; -ssscCCAACTCCCss- ; cor=; Ncor= a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 0 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 0 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 0 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67 0

oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4_rc; m=6/10; ncol2=17; w=0; offset=1; strand=R; shift=1; score=0.740313; -sssgCCAACTCCCgss ; cor=; Ncor= a 0 62 51 18 23 15 2 288 271 2 13 20 9 12 18 25 71 c 0 95 135 196 58 265 274 14 23 309 9 251 295 254 67 133 82 g 0 100 85 96 220 29 47 20 23 13 28 43 19 38 211 108 93 t 0 70 56 17 26 18 4 5 10 3 277 13 4 23 31 61 81

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m5; m=7/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score=0.708906; scsgCCCAACTCGgcsk ; cor=; Ncor= a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 60 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 71 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 85 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51 77

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=8/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.708576; -ssscCGAACTCCcss- ; cor=; Ncor= a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 0 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 0 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 0 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64 0

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5_rc; m=9/10; ncol2=15; w=0; offset=1; strand=R; shift=1; score=0.67658; -sssggCAACTCCcss- ; cor=; Ncor= a 0 90 69 30 56 31 3 402 393 2 15 24 11 34 59 28 0 c 0 130 169 156 97 88 383 8 17 414 8 349 389 276 151 175 0 g 0 129 114 227 236 270 45 15 15 15 32 46 31 64 152 173 0 t 0 88 85 24 48 48 6 12 12 6 382 18 6 63 75 61 0

oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4; m=10/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.660644; -ssGcCCAACTCGyss- ; cor=; Ncor= a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 0 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 0 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 0 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift1 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssscCCAACTCCCss ; Alignment reference a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssscCCAACTCCCss ; cor=; Ncor= a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3; m=2/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.90395; -ssscCGAACTCCcss ; cor=; Ncor= a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64

oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=3/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.898923; -ssGcCCAACTCGyss ; cor=; Ncor= a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5_rc; m=4/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.894074; -sssggCAACTCCcss ; cor=; Ncor= a 0 90 69 30 56 31 3 402 393 2 15 24 11 34 59 28 c 0 130 169 156 97 88 383 8 17 414 8 349 389 276 151 175 g 0 129 114 227 236 270 45 15 15 15 32 46 31 64 152 173 t 0 88 85 24 48 48 6 12 12 6 382 18 6 63 75 61

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=5/10; ncol2=18; w=-1; offset=-1; strand=D; shift=0; score=0.817746; ssssCCCAACTCCCss ; cor=; Ncor= a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46

oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4_rc; m=6/10; ncol2=17; w=0; offset=0; strand=R; shift=1; score=0.808716; -sssgCCAACTCCCgs ; cor=; Ncor= a 0 62 51 18 23 15 2 288 271 2 13 20 9 12 18 25 c 0 95 135 196 58 265 274 14 23 309 9 251 295 254 67 133 g 0 100 85 96 220 29 47 20 23 13 28 43 19 38 211 108 t 0 70 56 17 26 18 4 5 10 3 277 13 4 23 31 61

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=7/10; ncol2=17; w=0; offset=0; strand=D; shift=1; score=0.796611; -ssscCCAACTGCcsb ; cor=; Ncor= a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=8/10; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.771844; ssssCCCAACTGCCGs ; cor=; Ncor= a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=9/10; ncol2=18; w=-1; offset=-1; strand=D; shift=0; score=0.753507; sscgCCGAACTCCCss ; cor=; Ncor= a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5; m=10/10; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.749381; scsgCCCAACTCGgcs ; cor=; Ncor= a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=17; shift=1; ncol=18; -ssscCCAACTGCcsbss ; Alignment reference a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 75 59 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 92 143 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 107 98 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95 70 44
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/10; ncol2=17; w=0; offset=0; strand=D; shift=1; score= 1; -ssscCCAACTGCcsbss ; cor=; Ncor= a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 75 59 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 92 143 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 107 98 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95 70 44
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=2/10; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.862155; ssssCCCAACTGCCGss- ; cor=; Ncor= a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 56 0 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 64 0 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 64 0 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45 45 0
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=3/10; ncol2=18; w=-1; offset=-1; strand=D; shift=0; score=0.852092; ssssCCCAACTCCCssss ; cor=; Ncor= a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 55 34 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 66 107 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 67 66 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46 50 31
oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4_rc; m=4/10; ncol2=17; w=0; offset=0; strand=R; shift=1; score=0.840451; -sssgCCAACTCCCgsss ; cor=; Ncor= a 0 62 51 18 23 15 2 288 271 2 13 20 9 12 18 25 71 56 c 0 95 135 196 58 265 274 14 23 309 9 251 295 254 67 133 82 138 g 0 100 85 96 220 29 47 20 23 13 28 43 19 38 211 108 93 85 t 0 70 56 17 26 18 4 5 10 3 277 13 4 23 31 61 81 48
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=5/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.796611; -ssscCCAACTCCCss-- ; cor=; Ncor= a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 0 0 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 0 0 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 0 0 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67 0 0
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=6/10; ncol2=18; w=-1; offset=-1; strand=D; shift=0; score=0.772513; sscgCCGAACTCCCssvs ; cor=; Ncor= a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 98 44 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 100 187 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 110 112 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50 75 40
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=7/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.72747; -ssGcCCAACTCGyss-- ; cor=; Ncor= a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 0 0 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 0 0 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 0 0 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65 0 0
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3; m=8/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.722819; -ssscCGAACTCCcss-- ; cor=; Ncor= a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 0 0 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 0 0 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 0 0 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64 0 0
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5_rc; m=9/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.703627; -sssggCAACTCCcss-- ; cor=; Ncor= a 0 90 69 30 56 31 3 402 393 2 15 24 11 34 59 28 0 0 c 0 130 169 156 97 88 383 8 17 414 8 349 389 276 151 175 0 0 g 0 129 114 227 236 270 45 15 15 15 32 46 31 64 152 173 0 0 t 0 88 85 24 48 48 6 12 12 6 382 18 6 63 75 61 0 0
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5; m=10/10; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.701098; scsgCCCAACTCGgcsk- ; cor=; Ncor= a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 60 0 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 71 0 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 85 0 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51 77 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssGcCCAACTCGyss ; Alignment reference a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssGcCCAACTCGyss ; cor=; Ncor= a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=2/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.898923; -ssscCCAACTCCCss ; cor=; Ncor= a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5; m=3/10; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.86251; scsgCCCAACTCGgcs ; cor=; Ncor= a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3; m=4/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.83626; -ssscCGAACTCCcss ; cor=; Ncor= a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5_rc; m=5/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.766993; -sssggCAACTCCcss ; cor=; Ncor= a 0 90 69 30 56 31 3 402 393 2 15 24 11 34 59 28 c 0 130 169 156 97 88 383 8 17 414 8 349 389 276 151 175 g 0 129 114 227 236 270 45 15 15 15 32 46 31 64 152 173 t 0 88 85 24 48 48 6 12 12 6 382 18 6 63 75 61
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=6/10; ncol2=17; w=0; offset=0; strand=D; shift=1; score=0.72747; -ssscCCAACTGCcsb ; cor=; Ncor= a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=7/10; ncol2=18; w=-1; offset=-1; strand=D; shift=0; score=0.707928; ssssCCCAACTCCCss ; cor=; Ncor= a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46
oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4_rc; m=8/10; ncol2=17; w=0; offset=0; strand=R; shift=1; score=0.684475; -sssgCCAACTCCCgs ; cor=; Ncor= a 0 62 51 18 23 15 2 288 271 2 13 20 9 12 18 25 c 0 95 135 196 58 265 274 14 23 309 9 251 295 254 67 133 g 0 100 85 96 220 29 47 20 23 13 28 43 19 38 211 108 t 0 70 56 17 26 18 4 5 10 3 277 13 4 23 31 61
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=9/10; ncol2=18; w=-1; offset=-1; strand=D; shift=0; score=0.677945; sscgCCGAACTCCCss ; cor=; Ncor= a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=10/10; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.660644; ssssCCCAACTGCCGs ; cor=; Ncor= a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=18; shift=0; ncol=18; sscgCCGAACTCCCssvs ; Alignment reference a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 98 44 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 100 187 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 110 112 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50 75 40
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/10; ncol2=18; w=0; offset=0; strand=D; shift=0; score= 1; sscgCCGAACTCCCssvs ; cor=; Ncor= a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 98 44 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 100 187 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 110 112 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50 75 40
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=2/10; ncol2=18; w=0; offset=0; strand=D; shift=0; score=0.906309; ssssCCCAACTCCCssss ; cor=; Ncor= a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 55 34 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 66 107 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 67 66 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46 50 31
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3; m=3/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.823043; -ssscCGAACTCCcss-- ; cor=; Ncor= a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 0 0 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 0 0 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 0 0 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64 0 0
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=4/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score=0.781003; ssssCCCAACTGCCGss- ; cor=; Ncor= a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 56 0 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 64 0 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 64 0 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45 45 0
oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4_rc; m=5/10; ncol2=17; w=0; offset=1; strand=R; shift=1; score=0.773777; -sssgCCAACTCCCgsss ; cor=; Ncor= a 0 62 51 18 23 15 2 288 271 2 13 20 9 12 18 25 71 56 c 0 95 135 196 58 265 274 14 23 309 9 251 295 254 67 133 82 138 g 0 100 85 96 220 29 47 20 23 13 28 43 19 38 211 108 93 85 t 0 70 56 17 26 18 4 5 10 3 277 13 4 23 31 61 81 48
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=6/10; ncol2=17; w=0; offset=1; strand=D; shift=1; score=0.772513; -ssscCCAACTGCcsbss ; cor=; Ncor= a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 75 59 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 92 143 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 107 98 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95 70 44
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=7/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.753507; -ssscCCAACTCCCss-- ; cor=; Ncor= a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 0 0 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 0 0 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 0 0 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67 0 0
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5; m=8/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score=0.718753; scsgCCCAACTCGgcsk- ; cor=; Ncor= a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 60 0 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 71 0 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 85 0 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51 77 0
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=9/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.677945; -ssGcCCAACTCGyss-- ; cor=; Ncor= a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 0 0 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 0 0 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 0 0 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65 0 0
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5_rc; m=10/10; ncol2=15; w=0; offset=1; strand=R; shift=1; score=0.636511; -sssggCAACTCCcss-- ; cor=; Ncor= a 0 90 69 30 56 31 3 402 393 2 15 24 11 34 59 28 0 0 c 0 130 169 156 97 88 383 8 17 414 8 349 389 276 151 175 0 0 g 0 129 114 227 236 270 45 15 15 15 32 46 31 64 152 173 0 0 t 0 88 85 24 48 48 6 12 12 6 382 18 6 63 75 61 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift2 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=15; shift=2; ncol=17; --ssgGGAGTTGccsss ; Alignment reference a 0 0 61 75 63 6 18 382 6 12 12 6 48 48 24 85 88 c 0 0 173 152 64 31 46 32 15 15 15 45 270 236 227 114 129 g 0 0 175 151 276 389 349 8 414 17 8 383 88 97 156 169 130 t 0 0 28 59 34 11 24 15 2 393 402 3 31 56 30 69 90
oligos_6nt_test_vs_ctrl_m5_shift2 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=2; score= 1; --ssgGGAGTTGccsss ; cor=; Ncor= a 0 0 61 75 63 6 18 382 6 12 12 6 48 48 24 85 88 c 0 0 173 152 64 31 46 32 15 15 15 45 270 236 227 114 129 g 0 0 175 151 276 389 349 8 414 17 8 383 88 97 156 169 130 t 0 0 28 59 34 11 24 15 2 393 402 3 31 56 30 69 90
oligos_6nt_test_vs_ctrl_m1_rc_shift2 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1_rc; m=2/10; ncol2=15; w=0; offset=0; strand=R; shift=2; score=0.894074; --ssGGGAGTTGGgsss ; cor=; Ncor= a 0 0 67 57 48 6 12 340 1 8 6 3 28 39 23 64 87 c 0 0 154 132 42 42 29 23 12 34 8 76 31 67 227 107 106 g 0 0 138 158 268 321 326 10 367 20 12 302 307 240 105 163 107 t 0 0 23 35 24 13 15 9 2 320 356 1 16 36 27 48 82
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4; m=3/10; ncol2=17; w=-2; offset=-2; strand=D; shift=0; score=0.795746; ssscGGGAGTTGGcsss ; cor=; Ncor= a 48 81 61 31 23 4 13 277 3 10 5 4 18 26 17 56 70 c 85 93 108 211 38 19 43 28 13 23 20 47 29 220 96 85 100 g 138 82 133 67 254 295 251 9 309 23 14 274 265 58 196 135 95 t 56 71 25 18 12 9 20 13 2 271 288 2 15 23 18 51 62
oligos_6nt_test_vs_ctrl_m4_rc_shift2 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4_rc; m=4/10; ncol2=15; w=0; offset=0; strand=R; shift=2; score=0.766993; --ssrCGAGTTGGgCss ; cor=; Ncor= a 0 0 65 51 133 8 9 420 5 10 7 1 14 48 27 84 107 c 0 0 196 113 109 322 46 14 16 40 8 110 27 87 305 131 115 g 0 0 159 242 154 102 389 13 426 35 9 334 397 270 90 187 133 t 0 0 28 42 52 16 4 1 1 363 424 3 10 43 26 46 93
oligos_6nt_test_vs_ctrl_m3_rc_shift2 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3_rc; m=5/10; ncol2=15; w=0; offset=0; strand=R; shift=2; score=0.759683; --ssgGGAGTTCGgsss ; cor=; Ncor= a 0 0 64 58 64 11 16 468 2 17 24 3 22 58 39 78 128 c 0 0 243 192 70 85 74 24 38 9 8 455 46 64 309 172 148 g 0 0 177 229 341 406 424 16 477 20 14 62 444 350 141 219 138 t 0 0 38 43 47 20 8 14 5 476 476 2 10 50 33 53 108
oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1_rc; m=6/10; ncol2=18; w=-2; offset=-2; strand=R; shift=0; score=0.72422; ssssGGGAGTTGGGsss ; cor=; Ncor= a 31 50 46 15 14 2 11 209 1 9 4 2 18 18 15 34 52 c 66 67 81 148 10 18 27 14 8 25 5 44 19 32 140 98 61 g 107 66 91 60 203 211 193 7 227 10 12 190 191 173 70 81 71 t 34 55 20 15 11 7 7 8 2 194 217 2 10 15 13 25 54
oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2_rc; m=7/10; ncol2=17; w=-2; offset=-2; strand=R; shift=0; score=0.703627; ssvsgGCAGTTGGgsss ; cor=; Ncor= a 44 70 95 30 32 9 14 301 3 9 6 4 22 31 15 54 72 c 98 107 119 124 61 66 251 17 16 12 10 57 28 65 207 117 111 g 143 92 104 139 232 253 65 15 322 17 6 275 287 226 103 131 86 t 59 75 26 51 19 16 14 11 3 306 322 8 7 22 19 42 75
oligos_7nt_test_vs_ctrl_m3_rc_shift1 (oligos_7nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3_rc; m=8/10; ncol2=17; w=-1; offset=-1; strand=R; shift=1; score=0.67658; -ssCGGCAGTTGGGsss ; cor=; Ncor= a 0 45 45 12 12 1 11 191 4 3 4 4 12 18 8 32 56 c 0 64 76 161 23 23 177 18 10 24 12 47 24 30 147 105 67 g 0 64 86 46 188 201 35 9 214 16 8 175 188 170 61 70 69 t 0 56 22 10 6 4 6 11 1 186 205 3 5 11 13 22 37
oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2_rc; m=9/10; ncol2=18; w=-2; offset=-2; strand=R; shift=0; score=0.636511; sbssGGGAGTTCGGcgs ; cor=; Ncor= a 40 75 50 26 37 8 10 342 4 15 20 3 15 37 19 45 93 c 112 110 173 228 34 48 51 20 19 16 14 325 35 55 255 95 109 g 187 100 130 111 282 316 315 12 356 19 11 54 323 262 84 209 108 t 44 98 30 18 30 11 7 9 4 333 338 1 10 29 25 34 73
oligos_7nt_test_vs_ctrl_m5_rc_shift1 (oligos_7nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5_rc; m=10/10; ncol2=17; w=-1; offset=-1; strand=R; shift=1; score=0.621284; -msgcCGAGTTGGGcsg ; cor=; Ncor= a 0 77 51 28 42 7 2 270 6 7 4 2 9 15 16 44 69 c 0 85 122 49 160 232 31 9 7 30 7 68 17 42 192 130 69 g 0 71 96 197 69 47 255 10 279 30 8 218 259 219 65 107 91 t 0 60 24 19 22 7 5 4 1 226 274 5 8 17 20 12 64

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=17; shift=0; ncol=17; scsgCCCAACTCGgcsk ; Alignment reference a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 60 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 71 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 85 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51 77
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score= 1; scsgCCCAACTCGgcsk ; cor=; Ncor= a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 60 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 71 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 85 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51 77
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4; m=2/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.86251; -ssGcCCAACTCGyss- ; cor=; Ncor= a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 0 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 0 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 0 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65 0
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1; m=3/10; ncol2=18; w=0; offset=0; strand=D; shift=0; score=0.756185; ssssCCCAACTCCCsss ; cor=; Ncor= a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 55 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 66 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 67 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46 50
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=4/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.749381; -ssscCCAACTCCCss- ; cor=; Ncor= a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 0 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 0 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 0 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67 0
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2; m=5/10; ncol2=18; w=0; offset=0; strand=D; shift=0; score=0.718753; sscgCCGAACTCCCssv ; cor=; Ncor= a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 98 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 100 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 110 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50 75
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3; m=6/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score=0.708906; ssssCCCAACTGCCGss ; cor=; Ncor= a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 56 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 64 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 64 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45 45
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2; m=7/10; ncol2=17; w=0; offset=1; strand=D; shift=1; score=0.701098; -ssscCCAACTGCcsbs ; cor=; Ncor= a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 75 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 92 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 107 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95 70
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3; m=8/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.700474; -ssscCGAACTCCcss- ; cor=; Ncor= a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 0 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 0 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 0 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64 0
oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4_rc; m=9/10; ncol2=17; w=0; offset=1; strand=R; shift=1; score=0.626957; -sssgCCAACTCCCgss ; cor=; Ncor= a 0 62 51 18 23 15 2 288 271 2 13 20 9 12 18 25 71 c 0 95 135 196 58 265 274 14 23 309 9 251 295 254 67 133 82 g 0 100 85 96 220 29 47 20 23 13 28 43 19 38 211 108 93 t 0 70 56 17 26 18 4 5 10 3 277 13 4 23 31 61 81
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5_rc; m=10/10; ncol2=15; w=0; offset=1; strand=R; shift=1; score=0.621284; -sssggCAACTCCcss- ; cor=; Ncor= a 0 90 69 30 56 31 3 402 393 2 15 24 11 34 59 28 0 c 0 130 169 156 97 88 383 8 17 414 8 349 389 276 151 175 0 g 0 129 114 227 236 270 45 15 15 15 32 46 31 64 152 173 0 t 0 88 85 24 48 48 6 12 12 6 382 18 6 63 75 61 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssscCGAACTCCcss ; Alignment reference a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssscCGAACTCCcss ; cor=; Ncor= a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=2/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.90395; -ssscCCAACTCCCss ; cor=; Ncor= a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4; m=3/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.83626; -ssGcCCAACTCGyss ; cor=; Ncor= a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2; m=4/10; ncol2=18; w=-1; offset=-1; strand=D; shift=0; score=0.823043; sscgCCGAACTCCCss ; cor=; Ncor= a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5_rc; m=5/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.759683; -sssggCAACTCCcss ; cor=; Ncor= a 0 90 69 30 56 31 3 402 393 2 15 24 11 34 59 28 c 0 130 169 156 97 88 383 8 17 414 8 349 389 276 151 175 g 0 129 114 227 236 270 45 15 15 15 32 46 31 64 152 173 t 0 88 85 24 48 48 6 12 12 6 382 18 6 63 75 61
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1; m=6/10; ncol2=18; w=-1; offset=-1; strand=D; shift=0; score=0.738456; ssssCCCAACTCCCss ; cor=; Ncor= a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2; m=7/10; ncol2=17; w=0; offset=0; strand=D; shift=1; score=0.722819; -ssscCCAACTGCcsb ; cor=; Ncor= a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=8/10; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.708576; ssssCCCAACTGCCGs ; cor=; Ncor= a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45
oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4_rc; m=9/10; ncol2=17; w=0; offset=0; strand=R; shift=1; score=0.704677; -sssgCCAACTCCCgs ; cor=; Ncor= a 0 62 51 18 23 15 2 288 271 2 13 20 9 12 18 25 c 0 95 135 196 58 265 274 14 23 309 9 251 295 254 67 133 g 0 100 85 96 220 29 47 20 23 13 28 43 19 38 211 108 t 0 70 56 17 26 18 4 5 10 3 277 13 4 23 31 61
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m5; m=10/10; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.700474; scsgCCCAACTCGgcs ; cor=; Ncor= a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=18; shift=0; ncol=18; ssssCCCAACTCCCssss ; Alignment reference a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 55 34 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 66 107 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 67 66 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46 50 31
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/10; ncol2=18; w=0; offset=0; strand=D; shift=0; score= 1; ssssCCCAACTCCCssss ; cor=; Ncor= a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 55 34 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 66 107 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 67 66 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46 50 31
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=2/10; ncol2=18; w=0; offset=0; strand=D; shift=0; score=0.906309; sscgCCGAACTCCCssvs ; cor=; Ncor= a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 98 44 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 100 187 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 110 112 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50 75 40
oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4_rc; m=3/10; ncol2=17; w=0; offset=1; strand=R; shift=1; score=0.868982; -sssgCCAACTCCCgsss ; cor=; Ncor= a 0 62 51 18 23 15 2 288 271 2 13 20 9 12 18 25 71 56 c 0 95 135 196 58 265 274 14 23 309 9 251 295 254 67 133 82 138 g 0 100 85 96 220 29 47 20 23 13 28 43 19 38 211 108 93 85 t 0 70 56 17 26 18 4 5 10 3 277 13 4 23 31 61 81 48
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=4/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score=0.864074; ssssCCCAACTGCCGss- ; cor=; Ncor= a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 56 0 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 64 0 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 64 0 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45 45 0
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=5/10; ncol2=17; w=0; offset=1; strand=D; shift=1; score=0.852092; -ssscCCAACTGCcsbss ; cor=; Ncor= a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 75 59 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 92 143 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 107 98 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95 70 44
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=6/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.817746; -ssscCCAACTCCCss-- ; cor=; Ncor= a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 0 0 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 0 0 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 0 0 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67 0 0
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5; m=7/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score=0.756185; scsgCCCAACTCGgcsk- ; cor=; Ncor= a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 60 0 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 71 0 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 85 0 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51 77 0
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3; m=8/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.738456; -ssscCGAACTCCcss-- ; cor=; Ncor= a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 0 0 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 0 0 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 0 0 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64 0 0
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5_rc; m=9/10; ncol2=15; w=0; offset=1; strand=R; shift=1; score=0.72422; -sssggCAACTCCcss-- ; cor=; Ncor= a 0 90 69 30 56 31 3 402 393 2 15 24 11 34 59 28 0 0 c 0 130 169 156 97 88 383 8 17 414 8 349 389 276 151 175 0 0 g 0 129 114 227 236 270 45 15 15 15 32 46 31 64 152 173 0 0 t 0 88 85 24 48 48 6 12 12 6 382 18 6 63 75 61 0 0
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=10/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.707928; -ssGcCCAACTCGyss-- ; cor=; Ncor= a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 0 0 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 0 0 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 0 0 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=17; shift=0; ncol=17; ssscGGGAGTTGGcsss ; Alignment reference a 48 81 61 31 23 4 13 277 3 10 5 4 18 26 17 56 70 c 85 93 108 211 38 19 43 28 13 23 20 47 29 220 96 85 100 g 138 82 133 67 254 295 251 9 309 23 14 274 265 58 196 135 95 t 56 71 25 18 12 9 20 13 2 271 288 2 15 23 18 51 62
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score= 1; ssscGGGAGTTGGcsss ; cor=; Ncor= a 48 81 61 31 23 4 13 277 3 10 5 4 18 26 17 56 70 c 85 93 108 211 38 19 43 28 13 23 20 47 29 220 96 85 100 g 138 82 133 67 254 295 251 9 309 23 14 274 265 58 196 135 95 t 56 71 25 18 12 9 20 13 2 271 288 2 15 23 18 51 62
oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1_rc; m=2/10; ncol2=18; w=0; offset=0; strand=R; shift=0; score=0.868982; ssssGGGAGTTGGGsss ; cor=; Ncor= a 31 50 46 15 14 2 11 209 1 9 4 2 18 18 15 34 52 c 66 67 81 148 10 18 27 14 8 25 5 44 19 32 140 98 61 g 107 66 91 60 203 211 193 7 227 10 12 190 191 173 70 81 71 t 34 55 20 15 11 7 7 8 2 194 217 2 10 15 13 25 54
oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2_rc; m=3/10; ncol2=17; w=0; offset=0; strand=R; shift=0; score=0.840451; ssvsgGCAGTTGGgsss ; cor=; Ncor= a 44 70 95 30 32 9 14 301 3 9 6 4 22 31 15 54 72 c 98 107 119 124 61 66 251 17 16 12 10 57 28 65 207 117 111 g 143 92 104 139 232 253 65 15 322 17 6 275 287 226 103 131 86 t 59 75 26 51 19 16 14 11 3 306 322 8 7 22 19 42 75
oligos_6nt_test_vs_ctrl_m1_rc_shift2 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1_rc; m=4/10; ncol2=15; w=0; offset=2; strand=R; shift=2; score=0.808716; --ssGGGAGTTGGgsss ; cor=; Ncor= a 0 0 67 57 48 6 12 340 1 8 6 3 28 39 23 64 87 c 0 0 154 132 42 42 29 23 12 34 8 76 31 67 227 107 106 g 0 0 138 158 268 321 326 10 367 20 12 302 307 240 105 163 107 t 0 0 23 35 24 13 15 9 2 320 356 1 16 36 27 48 82
oligos_6nt_test_vs_ctrl_m5_shift2 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5; m=5/10; ncol2=15; w=0; offset=2; strand=D; shift=2; score=0.795746; --ssgGGAGTTGccsss ; cor=; Ncor= a 0 0 61 75 63 6 18 382 6 12 12 6 48 48 24 85 88 c 0 0 173 152 64 31 46 32 15 15 15 45 270 236 227 114 129 g 0 0 175 151 276 389 349 8 414 17 8 383 88 97 156 169 130 t 0 0 28 59 34 11 24 15 2 393 402 3 31 56 30 69 90
oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2_rc; m=6/10; ncol2=18; w=0; offset=0; strand=R; shift=0; score=0.773777; sbssGGGAGTTCGGcgs ; cor=; Ncor= a 40 75 50 26 37 8 10 342 4 15 20 3 15 37 19 45 93 c 112 110 173 228 34 48 51 20 19 16 14 325 35 55 255 95 109 g 187 100 130 111 282 316 315 12 356 19 11 54 323 262 84 209 108 t 44 98 30 18 30 11 7 9 4 333 338 1 10 29 25 34 73
oligos_7nt_test_vs_ctrl_m3_rc_shift1 (oligos_7nt_test_vs_ctrl_m3_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3_rc; m=7/10; ncol2=17; w=0; offset=1; strand=R; shift=1; score=0.740313; -ssCGGCAGTTGGGsss ; cor=; Ncor= a 0 45 45 12 12 1 11 191 4 3 4 4 12 18 8 32 56 c 0 64 76 161 23 23 177 18 10 24 12 47 24 30 147 105 67 g 0 64 86 46 188 201 35 9 214 16 8 175 188 170 61 70 69 t 0 56 22 10 6 4 6 11 1 186 205 3 5 11 13 22 37
oligos_6nt_test_vs_ctrl_m3_rc_shift2 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3_rc; m=8/10; ncol2=15; w=0; offset=2; strand=R; shift=2; score=0.704677; --ssgGGAGTTCGgsss ; cor=; Ncor= a 0 0 64 58 64 11 16 468 2 17 24 3 22 58 39 78 128 c 0 0 243 192 70 85 74 24 38 9 8 455 46 64 309 172 148 g 0 0 177 229 341 406 424 16 477 20 14 62 444 350 141 219 138 t 0 0 38 43 47 20 8 14 5 476 476 2 10 50 33 53 108
oligos_6nt_test_vs_ctrl_m4_rc_shift2 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4_rc; m=9/10; ncol2=15; w=0; offset=2; strand=R; shift=2; score=0.684475; --ssrCGAGTTGGgCss ; cor=; Ncor= a 0 0 65 51 133 8 9 420 5 10 7 1 14 48 27 84 107 c 0 0 196 113 109 322 46 14 16 40 8 110 27 87 305 131 115 g 0 0 159 242 154 102 389 13 426 35 9 334 397 270 90 187 133 t 0 0 28 42 52 16 4 1 1 363 424 3 10 43 26 46 93
oligos_7nt_test_vs_ctrl_m5_rc_shift1 (oligos_7nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5_rc; m=10/10; ncol2=17; w=0; offset=1; strand=R; shift=1; score=0.626957; -msgcCGAGTTGGGcsg ; cor=; Ncor= a 0 77 51 28 42 7 2 270 6 7 4 2 9 15 16 44 69 c 0 85 122 49 160 232 31 9 7 30 7 68 17 42 192 130 69 g 0 71 96 197 69 47 255 10 279 30 8 218 259 219 65 107 91 t 0 60 24 19 22 7 5 4 1 226 274 5 8 17 20 12 64

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=17; shift=0; ncol=17; ssssCCCAACTGCCGss ; Alignment reference a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 56 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 64 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 64 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45 45
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score= 1; ssssCCCAACTGCCGss ; cor=; Ncor= a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 56 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 64 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 64 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45 45
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1; m=2/10; ncol2=18; w=0; offset=0; strand=D; shift=0; score=0.864074; ssssCCCAACTCCCsss ; cor=; Ncor= a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 55 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 66 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 67 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46 50
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2; m=3/10; ncol2=17; w=0; offset=1; strand=D; shift=1; score=0.862155; -ssscCCAACTGCcsbs ; cor=; Ncor= a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 75 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 92 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 107 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95 70
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2; m=4/10; ncol2=18; w=0; offset=0; strand=D; shift=0; score=0.781003; sscgCCGAACTCCCssv ; cor=; Ncor= a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 98 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 100 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 110 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50 75
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=5/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.771844; -ssscCCAACTCCCss- ; cor=; Ncor= a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 0 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 0 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 0 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67 0
oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4_rc; m=6/10; ncol2=17; w=0; offset=1; strand=R; shift=1; score=0.740313; -sssgCCAACTCCCgss ; cor=; Ncor= a 0 62 51 18 23 15 2 288 271 2 13 20 9 12 18 25 71 c 0 95 135 196 58 265 274 14 23 309 9 251 295 254 67 133 82 g 0 100 85 96 220 29 47 20 23 13 28 43 19 38 211 108 93 t 0 70 56 17 26 18 4 5 10 3 277 13 4 23 31 61 81
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m5; m=7/10; ncol2=17; w=0; offset=0; strand=D; shift=0; score=0.708906; scsgCCCAACTCGgcsk ; cor=; Ncor= a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 60 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 71 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 85 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51 77
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=8/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.708576; -ssscCGAACTCCcss- ; cor=; Ncor= a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 0 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 0 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 0 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64 0
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5_rc; m=9/10; ncol2=15; w=0; offset=1; strand=R; shift=1; score=0.67658; -sssggCAACTCCcss- ; cor=; Ncor= a 0 90 69 30 56 31 3 402 393 2 15 24 11 34 59 28 0 c 0 130 169 156 97 88 383 8 17 414 8 349 389 276 151 175 0 g 0 129 114 227 236 270 45 15 15 15 32 46 31 64 152 173 0 t 0 88 85 24 48 48 6 12 12 6 382 18 6 63 75 61 0
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4; m=10/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.660644; -ssGcCCAACTCGyss- ; cor=; Ncor= a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 0 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 0 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 0 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssscCCAACTCCCss ; Alignment reference a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssscCCAACTCCCss ; cor=; Ncor= a 0 82 48 27 36 16 1 356 320 2 9 15 13 24 35 23 c 0 107 163 105 240 307 302 12 20 367 10 326 321 268 158 138 g 0 106 107 227 67 31 76 8 34 12 23 29 42 42 132 154 t 0 87 64 23 39 28 3 6 8 1 340 12 6 48 57 67
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3; m=2/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.90395; -ssscCGAACTCCcss ; cor=; Ncor= a 0 108 53 33 50 10 2 476 476 5 14 8 20 47 43 38 c 0 138 219 141 350 444 62 14 20 477 16 424 406 341 229 177 g 0 148 172 309 64 46 455 8 9 38 24 74 85 70 192 243 t 0 128 78 39 58 22 3 24 17 2 468 16 11 64 58 64
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=3/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.898923; -ssGcCCAACTCGyss ; cor=; Ncor= a 0 93 46 26 43 10 3 424 363 1 1 4 16 52 42 28 c 0 133 187 90 270 397 334 9 35 426 13 389 102 154 242 159 g 0 115 131 305 87 27 110 8 40 16 14 46 322 109 113 196 t 0 107 84 27 48 14 1 7 10 5 420 9 8 133 51 65
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5_rc; m=4/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.894074; -sssggCAACTCCcss ; cor=; Ncor= a 0 90 69 30 56 31 3 402 393 2 15 24 11 34 59 28 c 0 130 169 156 97 88 383 8 17 414 8 349 389 276 151 175 g 0 129 114 227 236 270 45 15 15 15 32 46 31 64 152 173 t 0 88 85 24 48 48 6 12 12 6 382 18 6 63 75 61
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=5/10; ncol2=18; w=-1; offset=-1; strand=D; shift=0; score=0.817746; ssssCCCAACTCCCss ; cor=; Ncor= a 26 54 25 13 15 10 2 217 194 2 8 7 7 11 15 20 c 102 71 81 70 173 191 190 12 10 227 7 193 211 203 60 91 g 95 61 98 140 32 19 44 5 25 8 14 27 18 10 148 81 t 15 52 34 15 18 18 2 4 9 1 209 11 2 14 15 46
oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4_rc; m=6/10; ncol2=17; w=0; offset=0; strand=R; shift=1; score=0.808716; -sssgCCAACTCCCgs ; cor=; Ncor= a 0 62 51 18 23 15 2 288 271 2 13 20 9 12 18 25 c 0 95 135 196 58 265 274 14 23 309 9 251 295 254 67 133 g 0 100 85 96 220 29 47 20 23 13 28 43 19 38 211 108 t 0 70 56 17 26 18 4 5 10 3 277 13 4 23 31 61
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=7/10; ncol2=17; w=0; offset=0; strand=D; shift=1; score=0.796611; -ssscCCAACTGCcsb ; cor=; Ncor= a 0 75 42 19 22 7 8 322 306 3 11 14 16 19 51 26 c 0 86 131 103 226 287 275 6 17 322 15 65 253 232 139 104 g 0 111 117 207 65 28 57 10 12 16 17 251 66 61 124 119 t 0 72 54 15 31 22 4 6 9 3 301 14 9 32 30 95
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=8/10; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.771844; ssssCCCAACTGCCGs ; cor=; Ncor= a 26 37 22 13 11 5 3 205 186 1 11 6 4 6 10 22 c 104 69 70 61 170 188 175 8 16 214 9 35 201 188 46 86 g 77 67 105 147 30 24 47 12 24 10 18 177 23 23 161 76 t 22 56 32 8 18 12 4 4 3 4 191 11 1 12 12 45
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=9/10; ncol2=18; w=-1; offset=-1; strand=D; shift=0; score=0.753507; sscgCCGAACTCCCss ; cor=; Ncor= a 47 73 34 25 29 10 1 338 333 4 9 7 11 30 18 30 c 147 108 209 84 262 323 54 11 19 356 12 315 316 282 111 130 g 150 109 95 255 55 35 325 14 16 19 20 51 48 34 228 173 t 39 93 45 19 37 15 3 20 15 4 342 10 8 37 26 50
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5; m=10/10; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.749381; scsgCCCAACTCGgcs ; cor=; Ncor= a 27 64 12 20 17 8 5 274 226 1 4 5 7 22 19 24 c 120 91 107 65 219 259 218 8 30 279 10 255 47 69 197 96 g 111 69 130 192 42 17 68 7 30 7 9 31 232 160 49 122 t 35 69 44 16 15 9 2 4 7 6 270 2 7 42 28 51