/var/www/html/rsat/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083931_2026-01-22.083931_nNIkDc/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083931_2026-01-22.083931_nNIkDc/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title hupA48h-sup3 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083931_2026-01-22.083931_nNIkDc/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083931_2026-01-22.083931_nNIkDc/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.083931_2026-01-22.083931_nNIkDc/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	576
	Sum of sequence lengths      	273945
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	475
	Possible positions           	273369
 Oligonucleotide statistics:
	Total occurrences    	268498
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	273369
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	12	204
	2	-24	[-479,-460]	-469.5	15	269
	3	-23	[-459,-440]	-449.5	22	369
	4	-22	[-439,-420]	-429.5	28	496
	5	-21	[-419,-400]	-409.5	38	656
	6	-20	[-399,-380]	-389.5	41	786
	7	-19	[-379,-360]	-369.5	49	909
	8	-18	[-359,-340]	-349.5	60	1069
	9	-17	[-339,-320]	-329.5	77	1379
	10	-16	[-319,-300]	-309.5	98	1702
	11	-15	[-299,-280]	-289.5	133	2322
	12	-14	[-279,-260]	-269.5	174	3093
	13	-13	[-259,-240]	-249.5	222	3978
	14	-12	[-239,-220]	-229.5	267	4916
	15	-11	[-219,-200]	-209.5	360	6273
	16	-10	[-199,-180]	-189.5	435	7993
	17	-9	[-179,-160]	-169.5	511	9499
	18	-8	[-159,-140]	-149.5	561	10792
	19	-7	[-139,-120]	-129.5	576	11442
	20	-6	[-119,-100]	-109.5	576	11520
	21	-5	[-99,-80]	-89.5	576	11520
	22	-4	[-79,-60]	-69.5	576	11520
	23	-3	[-59,-40]	-49.5	576	11520
	24	-2	[-39,-20]	-29.5	576	11520
	25	-1	[-19,0]	-9.5	576	11520
	26	0	[1,20]	10.5	576	11520
	27	1	[21,40]	30.5	576	11520
	28	2	[41,60]	50.5	576	11520
	29	3	[61,80]	70.5	576	11520
	30	4	[81,100]	90.5	576	11520
	31	5	[101,120]	110.5	576	11520
	32	6	[121,140]	130.5	576	11405
	33	7	[141,160]	150.5	556	10688
	34	8	[161,180]	170.5	506	9343
	35	9	[181,200]	190.5	429	7845
	36	10	[201,220]	210.5	350	6079
	37	11	[221,240]	230.5	260	4825
	38	12	[241,260]	250.5	219	3891
	39	13	[261,280]	270.5	172	3007
	40	14	[281,300]	290.5	129	2250
	41	15	[301,320]	310.5	96	1662
	42	16	[321,340]	330.5	75	1345
	43	17	[341,360]	350.5	58	1048
	44	18	[361,380]	370.5	48	893
	45	19	[381,400]	390.5	41	778
	46	20	[401,420]	410.5	38	635
	47	21	[421,440]	430.5	28	484
	48	22	[441,460]	450.5	21	353
	49	23	[461,480]	470.5	15	261
	50	24	[481,500]	490.5	10	190

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
aa aa 4977 165.0 49 1.8e-14 2.8e-13 12.55 1 3 3 11 11 13 21 16 20 32 33 43 53 80 102 118 126 119 172 162 205 197 214 230 300 298 247 206 227 205 200 237 161 180 149 127 84 76 71 55 46 34 25 18 14 11 8 5 4 2 3
tt tt 5150 159.4 49 1.3e-13 2.1e-12 11.68 2 6 2 4 10 14 16 14 32 39 29 46 63 78 77 120 141 139 180 182 172 216 199 208 226 273 328 275 223 216 220 204 187 182 173 128 134 87 61 56 51 32 22 15 16 20 9 8 10 4 3
gg gg 29580 82.9 49 1.8e-03 0.028 1.55 3 18 34 37 59 94 68 84 122 151 184 242 341 438 551 712 884 1050 1183 1229 1311 1237 1234 1232 1149 1121 1273 1269 1174 1231 1315 1235 1291 1228 1020 905 659 512 418 309 249 151 120 102 88 79 59 47 45 22 14
cc cc 29971 72.8 49 1.5e-02 0.24 0.61 4 17 26 34 47 63 76 104 108 167 182 253 307 434 532 704 824 1113 1184 1353 1299 1324 1321 1299 1262 1274 1165 1208 1250 1252 1253 1336 1210 1180 1022 858 669 480 441 354 214 168 144 101 97 79 68 50 26 22 17
tg tg 14166 70.3 49 2.5e-02 0.4 0.40 5 11 19 14 23 38 46 47 58 61 85 119 170 224 273 322 447 469 545 559 577 548 552 572 588 596 674 662 641 596 623 558 617 555 486 389 304 253 189 153 115 76 66 53 51 46 22 30 28 5 11
ac ac 15994 70.1 49 2.6e-02 0.41 0.39 6 10 12 19 33 29 36 52 46 75 100 132 159 189 254 336 457 567 655 681 669 697 707 681 732 782 657 675 682 681 661 661 687 617 549 431 331 306 220 172 126 84 88 65 52 43 37 24 15 11 9
ct ct 13571 64.2 49 7.1e-02 1.1 -0.06 7 7 12 16 14 25 35 54 51 57 75 118 146 207 273 310 419 452 528 589 519 592 567 606 567 623 555 549 534 555 557 602 529 519 473 375 321 235 202 152 140 91 83 57 44 45 37 17 22 9 6
cg cg 37715 63.1 49 8.4e-02 1.3 -0.13 8 27 37 46 64 90 106 111 138 193 227 290 422 505 652 844 1056 1363 1554 1605 1691 1630 1602 1545 1597 1529 1498 1553 1610 1631 1607 1569 1619 1527 1347 1120 863 669 531 394 260 212 174 137 113 94 96 70 43 34 20
ca ca 14071 61.0 49 1.2e-01 1.9 -0.27 9 12 10 26 35 19 43 46 55 67 90 122 146 191 200 326 419 512 553 600 564 586 616 620 617 636 564 591 600 597 619 593 597 547 445 407 285 250 217 158 112 82 70 63 49 42 29 15 6 12 10
gc gc 31988 60.3 49 1.3e-01 2.1 -0.32 10 23 36 42 60 69 96 108 114 160 201 253 358 465 566 716 930 1164 1269 1396 1405 1370 1347 1287 1303 1276 1263 1308 1323 1408 1427 1329 1347 1310 1137 977 696 553 484 329 212 182 154 119 100 93 79 57 41 29 17
tc tc 17371 59.4 49 1.5e-01 2.3 -0.37 11 13 14 23 21 31 56 57 75 83 94 140 204 247 314 422 518 591 714 724 687 732 735 783 738 745 695 720 730 691 696 788 695 665 587 496 438 315 237 196 178 125 80 73 54 47 40 23 14 17 10
at at 5199 58.7 49 1.6e-01 2.6 -0.41 12 6 5 10 12 12 27 12 22 24 35 42 63 81 91 135 172 179 192 199 204 204 247 226 222 182 214 236 247 220 249 222 214 185 170 145 112 98 65 47 46 26 17 16 19 18 10 7 2 8 2
gt gt 15600 56.0 49 2.3e-01 3.7 -0.56 13 12 17 19 24 43 43 51 76 74 95 122 195 224 283 359 464 530 618 615 635 625 606 652 655 664 736 714 700 660 614 645 703 599 519 450 364 270 207 166 140 100 66 60 53 30 27 30 22 12 12
ta ta 2841 37.6 49 8.8e-01 14 -1.15 14 1 2 6 6 10 10 11 10 16 25 22 34 43 53 68 90 92 97 110 108 120 124 130 129 133 132 117 127 133 99 126 126 96 89 72 62 46 32 30 23 22 11 15 5 4 8 2 4 9 1
ag ag 13019 36.0 49 9.2e-01 15 -1.17 15 8 9 21 27 37 39 57 57 62 89 133 142 208 242 279 402 417 499 542 539 538 541 547 546 516 585 542 537 562 518 556 567 506 467 376 271 228 186 148 104 90 63 51 44 36 28 22 13 13 9
ga ga 17285 33.3 49 9.6e-01 15 -1.19 16 10 11 21 30 49 48 65 60 78 106 165 180 244 333 376 500 582 689 717 755 730 736 742 740 706 756 737 757 722 715 719 733 692 610 480 366 327 219 188 134 97 82 60 54 51 38 37 18 12 8 
 Host name	rsat
 Job started	2026-01-22.083936
 Job done	2026-01-22.083938
 Seconds	1.7
	user	1.7
	system	0.02
	cuser	0
;	csystem	0