position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084217_2026-01-22.084217_H5wC85/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title WT24h-all -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084217_2026-01-22.084217_H5wC85/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084217_2026-01-22.084217_H5wC85/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084217_2026-01-22.084217_H5wC85/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 16361 Sum of sequence lengths 8196618 Min sequence length 0 Max sequence length 501 Average sequence length 500 Possible positions 8196618 Oligonucleotide statistics: Total occurrences 7973694 Position interval parameters: Position interval 20 Number of windows 26 Total positions 8196618 Degrees of freedom 25 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -13 [-259,-240] -249.5 16359 179949 2 -12 [-239,-220] -229.5 16360 327200 3 -11 [-219,-200] -209.5 16360 327200 4 -10 [-199,-180] -189.5 16360 327200 5 -9 [-179,-160] -169.5 16360 327200 6 -8 [-159,-140] -149.5 16360 327200 7 -7 [-139,-120] -129.5 16361 327220 8 -6 [-119,-100] -109.5 16361 327220 9 -5 [-99,-80] -89.5 16361 327220 10 -4 [-79,-60] -69.5 16361 327220 11 -3 [-59,-40] -49.5 16361 327220 12 -2 [-39,-20] -29.5 16361 327220 13 -1 [-19,0] -9.5 16361 327220 14 0 [1,20] 10.5 16361 327220 15 1 [21,40] 30.5 16361 327220 16 2 [41,60] 50.5 16361 327220 17 3 [61,80] 70.5 16361 327220 18 4 [81,100] 90.5 16361 327220 19 5 [101,120] 110.5 16361 327220 20 6 [121,140] 130.5 16361 327219 21 7 [141,160] 150.5 16360 327200 22 8 [161,180] 170.5 16360 327200 23 9 [181,200] 190.5 16360 327200 24 10 [201,220] 210.5 16360 327200 25 11 [221,240] 230.5 16360 327200 26 12 [241,260] 250.5 16359 163590 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -249.5 occurrences in window 1 [-259,-240] 11 -229.5 occurrences in window 2 [-239,-220] 12 -209.5 occurrences in window 3 [-219,-200] 13 -189.5 occurrences in window 4 [-199,-180] 14 -169.5 occurrences in window 5 [-179,-160] 15 -149.5 occurrences in window 6 [-159,-140] 16 -129.5 occurrences in window 7 [-139,-120] 17 -109.5 occurrences in window 8 [-119,-100] 18 -89.5 occurrences in window 9 [-99,-80] 19 -69.5 occurrences in window 10 [-79,-60] 20 -49.5 occurrences in window 11 [-59,-40] 21 -29.5 occurrences in window 12 [-39,-20] 22 -9.5 occurrences in window 13 [-19,0] 23 10.5 occurrences in window 14 [1,20] 24 30.5 occurrences in window 15 [21,40] 25 50.5 occurrences in window 16 [41,60] 26 70.5 occurrences in window 17 [61,80] 27 90.5 occurrences in window 18 [81,100] 28 110.5 occurrences in window 19 [101,120] 29 130.5 occurrences in window 20 [121,140] 30 150.5 occurrences in window 21 [141,160] 31 170.5 occurrences in window 22 [161,180] 32 190.5 occurrences in window 23 [181,200] 33 210.5 occurrences in window 24 [201,220] 34 230.5 occurrences in window 25 [221,240] 35 250.5 occurrences in window 26 [241,260]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 2882915 | 37.5 | 25 | 5.2e-02 | 0.21 | 0.69 | 1 | 63874 | 115146 | 115080 | 114894 | 114990 | 114922 | 115159 | 114978 | 114415 | 114928 | 114930 | 114593 | 114554 | 114771 | 115343 | 114987 | 114911 | 115094 | 115073 | 114737 | 115231 | 115393 | 115108 | 115487 | 116106 | 58211 |
| t | t | 1107591 | 32.3 | 25 | 1.5e-01 | 0.6 | 0.22 | 2 | 24017 | 44701 | 44121 | 44442 | 44223 | 43975 | 43877 | 44444 | 44632 | 44141 | 44298 | 44196 | 43761 | 44073 | 44242 | 44440 | 44095 | 44363 | 44205 | 44279 | 44158 | 44000 | 44033 | 44109 | 44450 | 22316 |
| a | a | 1103574 | 26.8 | 25 | 3.6e-01 | 1.5 | -0.16 | 3 | 24670 | 44095 | 44029 | 43984 | 43876 | 44265 | 44057 | 43721 | 44029 | 44063 | 43796 | 44083 | 44417 | 44023 | 43786 | 44279 | 43784 | 44096 | 44158 | 44429 | 44135 | 43969 | 43915 | 43856 | 44100 | 21959 |
| c | c | 2879614 | 25.6 | 25 | 4.3e-01 | 1.7 | -0.24 | 4 | 63934 | 115368 | 114847 | 114929 | 114960 | 114721 | 114891 | 114820 | 114866 | 115032 | 114882 | 114937 | 115308 | 115154 | 114676 | 114303 | 115095 | 114768 | 114955 | 114870 | 114759 | 114814 | 115038 | 114771 | 114784 | 58132 |
Host name rsat Job started 2026-01-22.084836 Job done 2026-01-22.084923 Seconds 46.36 user 46.37 system 0.03 cuser 0 ; csystem 0