position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084217_2026-01-22.084217_H5wC85/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title WT24h-all -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084217_2026-01-22.084217_H5wC85/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084217_2026-01-22.084217_H5wC85/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084217_2026-01-22.084217_H5wC85/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 817 Sum of sequence lengths 386722 Min sequence length 0 Max sequence length 1000 Average sequence length 473 Possible positions 386722 Oligonucleotide statistics: Total occurrences 383291 Position interval parameters: Position interval 20 Number of windows 50 Total positions 386722 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 49 921 2 -24 [-479,-460] -469.5 56 1079 3 -23 [-459,-440] -449.5 67 1217 4 -22 [-439,-420] -429.5 79 1511 5 -21 [-419,-400] -409.5 89 1690 6 -20 [-399,-380] -389.5 109 1927 7 -19 [-379,-360] -369.5 125 2364 8 -18 [-359,-340] -349.5 153 2795 9 -17 [-339,-320] -329.5 182 3381 10 -16 [-319,-300] -309.5 218 4018 11 -15 [-299,-280] -289.5 251 4718 12 -14 [-279,-260] -269.5 287 5365 13 -13 [-259,-240] -249.5 333 6206 14 -12 [-239,-220] -229.5 366 7001 15 -11 [-219,-200] -209.5 420 7922 16 -10 [-199,-180] -189.5 475 8961 17 -9 [-179,-160] -169.5 551 10328 18 -8 [-159,-140] -149.5 649 12050 19 -7 [-139,-120] -129.5 717 13676 20 -6 [-119,-100] -109.5 789 15002 21 -5 [-99,-80] -89.5 817 16248 22 -4 [-79,-60] -69.5 817 16340 23 -3 [-59,-40] -49.5 817 16340 24 -2 [-39,-20] -29.5 817 16340 25 -1 [-19,0] -9.5 817 16340 26 0 [1,20] 10.5 817 16340 27 1 [21,40] 30.5 817 16340 28 2 [41,60] 50.5 817 16340 29 3 [61,80] 70.5 817 16340 30 4 [81,100] 90.5 817 16224 31 5 [101,120] 110.5 786 14936 32 6 [121,140] 130.5 715 13616 33 7 [141,160] 150.5 643 11956 34 8 [161,180] 170.5 544 10245 35 9 [181,200] 190.5 471 8902 36 10 [201,220] 210.5 418 7867 37 11 [221,240] 230.5 365 6972 38 12 [241,260] 250.5 330 6167 39 13 [261,280] 270.5 285 5324 40 14 [281,300] 290.5 251 4683 41 15 [301,320] 310.5 216 3983 42 16 [321,340] 330.5 179 3351 43 17 [341,360] 350.5 151 2767 44 18 [361,380] 370.5 124 2349 45 19 [381,400] 390.5 108 1912 46 20 [401,420] 410.5 88 1680 47 21 [421,440] 430.5 79 1498 48 22 [441,460] 450.5 67 1206 49 23 [461,480] 470.5 56 1071 50 24 [481,500] 490.5 49 913 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 55194 | 74.3 | 49 | 1.1e-02 | 0.045 | 1.34 | 1 | 132 | 146 | 188 | 219 | 254 | 241 | 352 | 410 | 460 | 599 | 602 | 744 | 878 | 957 | 1186 | 1289 | 1415 | 1685 | 1891 | 2138 | 2262 | 2271 | 2359 | 2369 | 2416 | 2477 | 2435 | 2416 | 2419 | 2317 | 2180 | 1921 | 1676 | 1460 | 1273 | 1152 | 915 | 864 | 723 | 638 | 560 | 468 | 370 | 303 | 263 | 239 | 199 | 182 | 158 | 123 |
| a | a | 54698 | 65.0 | 49 | 6.3e-02 | 0.25 | 0.60 | 2 | 136 | 156 | 143 | 214 | 245 | 288 | 322 | 387 | 505 | 553 | 683 | 745 | 854 | 981 | 1101 | 1261 | 1442 | 1671 | 1937 | 2056 | 2270 | 2351 | 2424 | 2417 | 2487 | 2443 | 2353 | 2268 | 2297 | 2233 | 2052 | 1952 | 1674 | 1444 | 1205 | 1065 | 1008 | 859 | 749 | 641 | 523 | 470 | 369 | 317 | 268 | 212 | 210 | 171 | 155 | 131 |
| g | g | 136156 | 63.3 | 49 | 8.2e-02 | 0.33 | 0.48 | 3 | 291 | 395 | 437 | 554 | 598 | 707 | 850 | 974 | 1174 | 1451 | 1645 | 1892 | 2250 | 2473 | 2777 | 3144 | 3690 | 4253 | 4856 | 5179 | 5745 | 5713 | 5556 | 5563 | 5542 | 5566 | 5802 | 5693 | 5725 | 5755 | 5289 | 4907 | 4288 | 3683 | 3154 | 2774 | 2567 | 2196 | 1886 | 1675 | 1442 | 1218 | 1014 | 891 | 684 | 585 | 521 | 428 | 380 | 324 |
| c | c | 137243 | 58.5 | 49 | 1.7e-01 | 0.66 | 0.18 | 4 | 356 | 362 | 433 | 524 | 593 | 691 | 840 | 1024 | 1242 | 1401 | 1747 | 1924 | 2164 | 2561 | 2821 | 3221 | 3721 | 4340 | 4848 | 5435 | 5764 | 5824 | 5807 | 5771 | 5665 | 5649 | 5564 | 5763 | 5679 | 5717 | 5246 | 4718 | 4228 | 3611 | 3244 | 2858 | 2482 | 2248 | 1952 | 1702 | 1430 | 1175 | 1013 | 838 | 697 | 644 | 568 | 425 | 378 | 335 |
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