One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084217_2026-01-22.084217_H5wC85/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084217_2026-01-22.084217_H5wC85/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=15; shift=0; ncol=15; ssscCCAACTGGsss ; Alignment reference a 114 53 45 91 16 8 524 458 4 8 10 26 68 50 49 c 153 222 162 269 472 422 3 35 526 15 98 115 241 287 179 g 173 190 316 116 40 117 10 42 17 16 429 394 155 168 248 t 108 83 25 72 20 1 11 13 1 509 11 13 84 43 72

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; ssscCCAACTGGsss ; cor=; Ncor= a 114 53 45 91 16 8 524 458 4 8 10 26 68 50 49 c 153 222 162 269 472 422 3 35 526 15 98 115 241 287 179 g 173 190 316 116 40 117 10 42 17 16 429 394 155 168 248 t 108 83 25 72 20 1 11 13 1 509 11 13 84 43 72

oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=2/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.88296; ksscCCAACTCGycs ; cor=; Ncor= a 136 61 46 91 14 2 563 476 3 0 7 13 59 54 37 c 145 271 176 288 518 462 9 50 572 17 529 109 166 338 220 g 169 174 336 141 48 134 20 58 21 14 56 473 127 148 267 t 151 95 43 81 21 3 9 17 5 570 9 6 249 61 77

oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=3/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.805792; bsscCCAACTCCcss ; cor=; Ncor= a 97 60 38 61 29 3 463 425 4 13 21 12 38 37 22 c 129 212 166 280 384 396 9 28 476 8 425 417 310 214 191 g 146 139 255 97 43 95 14 34 15 27 36 60 80 177 204 t 125 86 38 59 41 3 11 10 2 449 15 8 69 69 80

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=4/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.793984; gsscCCAACTCGtcs ; cor=; Ncor= a 120 46 34 50 13 0 438 339 3 1 8 14 34 37 29 c 121 228 137 324 422 365 13 63 456 15 434 66 81 313 181 g 123 140 286 66 37 117 16 59 21 18 38 402 59 102 222 t 121 71 28 45 13 3 18 24 5 451 5 3 311 33 53

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5; m=5/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.793758; sssCCCAACTGCCGs ; cor=; Ncor= a 59 38 21 19 8 4 275 251 2 11 11 4 11 11 29 c 80 120 92 220 248 227 7 20 286 17 56 270 248 51 122 g 90 96 176 43 33 69 15 30 15 22 224 30 29 231 94 t 76 51 16 23 16 5 8 4 2 255 14 1 17 12 60

oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3_rc; m=6/10; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.738286; ssscCGAACTCCcss ; cor=; Ncor= a 121 67 60 65 17 4 590 599 7 19 14 22 64 36 42 c 179 289 212 420 556 70 26 29 602 18 541 516 403 290 232 g 194 215 323 94 56 575 9 9 38 36 83 105 85 253 305 t 159 82 58 74 24 4 28 16 6 580 15 10 101 74 74

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=7/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.729118; ssscCCAACTCCCss ; cor=; Ncor= a 72 46 27 36 15 3 317 280 2 12 12 7 16 13 15 c 88 143 109 232 273 271 11 20 327 9 286 302 278 94 141 g 101 105 183 44 30 68 8 35 14 20 34 34 23 215 119 t 85 52 27 34 28 4 10 11 3 305 14 3 29 24 71

oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4_rc; m=8/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.71097; sssgCCAACTCCCgs ; cor=; Ncor= a 68 57 22 39 22 2 343 331 1 16 20 7 22 17 18 c 101 161 150 70 315 329 15 24 374 9 315 343 292 96 162 g 139 114 197 245 31 58 25 32 13 29 42 39 43 242 140 t 84 60 23 38 24 3 9 5 4 338 15 3 35 37 72

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5_rc; m=9/10; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.675082; -ssbgCAACTCCcss ; cor=; Ncor= a 0 79 40 97 42 4 520 508 3 11 29 18 48 57 36 c 0 215 267 146 138 477 22 20 542 8 452 475 357 217 232 g 0 179 213 149 305 72 15 21 11 23 62 59 87 200 216 t 0 91 44 172 79 11 7 15 8 522 21 12 72 90 80

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=10/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 0.6722; ssgCCGAACTCCCss ; cor=; Ncor= a 77 44 31 34 12 2 376 384 2 12 9 8 33 13 23 c 126 191 93 302 374 43 14 28 410 15 356 360 320 112 166 g 136 150 285 58 38 389 20 12 21 26 61 65 41 283 197 t 98 52 28 43 13 3 27 13 4 384 11 4 43 29 51

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=15; shift=0; ncol=15; bsscCCAACTCCcss ; Alignment reference a 97 60 38 61 29 3 463 425 4 13 21 12 38 37 22 c 129 212 166 280 384 396 9 28 476 8 425 417 310 214 191 g 146 139 255 97 43 95 14 34 15 27 36 60 80 177 204 t 125 86 38 59 41 3 11 10 2 449 15 8 69 69 80

oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; bsscCCAACTCCcss ; cor=; Ncor= a 97 60 38 61 29 3 463 425 4 13 21 12 38 37 22 c 129 212 166 280 384 396 9 28 476 8 425 417 310 214 191 g 146 139 255 97 43 95 14 34 15 27 36 60 80 177 204 t 125 86 38 59 41 3 11 10 2 449 15 8 69 69 80

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=2/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.920637; ssscCCAACTCCCss ; cor=; Ncor= a 72 46 27 36 15 3 317 280 2 12 12 7 16 13 15 c 88 143 109 232 273 271 11 20 327 9 286 302 278 94 141 g 101 105 183 44 30 68 8 35 14 20 34 34 23 215 119 t 85 52 27 34 28 4 10 11 3 305 14 3 29 24 71

oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3_rc; m=3/10; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.897494; ssscCGAACTCCcss ; cor=; Ncor= a 121 67 60 65 17 4 590 599 7 19 14 22 64 36 42 c 179 289 212 420 556 70 26 29 602 18 541 516 403 290 232 g 194 215 323 94 56 575 9 9 38 36 83 105 85 253 305 t 159 82 58 74 24 4 28 16 6 580 15 10 101 74 74

oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4_rc; m=4/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.890586; sssgCCAACTCCCgs ; cor=; Ncor= a 68 57 22 39 22 2 343 331 1 16 20 7 22 17 18 c 101 161 150 70 315 329 15 24 374 9 315 343 292 96 162 g 139 114 197 245 31 58 25 32 13 29 42 39 43 242 140 t 84 60 23 38 24 3 9 5 4 338 15 3 35 37 72

oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=5/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.879573; ksscCCAACTCGycs ; cor=; Ncor= a 136 61 46 91 14 2 563 476 3 0 7 13 59 54 37 c 145 271 176 288 518 462 9 50 572 17 529 109 166 338 220 g 169 174 336 141 48 134 20 58 21 14 56 473 127 148 267 t 151 95 43 81 21 3 9 17 5 570 9 6 249 61 77

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5_rc; m=6/10; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.864542; -ssbgCAACTCCcss ; cor=; Ncor= a 0 79 40 97 42 4 520 508 3 11 29 18 48 57 36 c 0 215 267 146 138 477 22 20 542 8 452 475 357 217 232 g 0 179 213 149 305 72 15 21 11 23 62 59 87 200 216 t 0 91 44 172 79 11 7 15 8 522 21 12 72 90 80

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=7/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.826514; ssgCCGAACTCCCss ; cor=; Ncor= a 77 44 31 34 12 2 376 384 2 12 9 8 33 13 23 c 126 191 93 302 374 43 14 28 410 15 356 360 320 112 166 g 136 150 285 58 38 389 20 12 21 26 61 65 41 283 197 t 98 52 28 43 13 3 27 13 4 384 11 4 43 29 51

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5; m=8/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.818931; sssCCCAACTGCCGs ; cor=; Ncor= a 59 38 21 19 8 4 275 251 2 11 11 4 11 11 29 c 80 120 92 220 248 227 7 20 286 17 56 270 248 51 122 g 90 96 176 43 33 69 15 30 15 22 224 30 29 231 94 t 76 51 16 23 16 5 8 4 2 255 14 1 17 12 60

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=9/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.805792; ssscCCAACTGGsss ; cor=; Ncor= a 114 53 45 91 16 8 524 458 4 8 10 26 68 50 49 c 153 222 162 269 472 422 3 35 526 15 98 115 241 287 179 g 173 190 316 116 40 117 10 42 17 16 429 394 155 168 248 t 108 83 25 72 20 1 11 13 1 509 11 13 84 43 72

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=10/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.782836; gsscCCAACTCGtcs ; cor=; Ncor= a 120 46 34 50 13 0 438 339 3 1 8 14 34 37 29 c 121 228 137 324 422 365 13 63 456 15 434 66 81 313 181 g 123 140 286 66 37 117 16 59 21 18 38 402 59 102 222 t 121 71 28 45 13 3 18 24 5 451 5 3 311 33 53

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=16; shift=0; ncol=16; ssgCCGAACTCCCsss ; Alignment reference a 77 44 31 34 12 2 376 384 2 12 9 8 33 13 23 105 c 126 191 93 302 374 43 14 28 410 15 356 360 320 112 166 110 g 136 150 285 58 38 389 20 12 21 26 61 65 41 283 197 124 t 98 52 28 43 13 3 27 13 4 384 11 4 43 29 51 98

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; ssgCCGAACTCCCsss ; cor=; Ncor= a 77 44 31 34 12 2 376 384 2 12 9 8 33 13 23 105 c 126 191 93 302 374 43 14 28 410 15 356 360 320 112 166 110 g 136 150 285 58 38 389 20 12 21 26 61 65 41 283 197 124 t 98 52 28 43 13 3 27 13 4 384 11 4 43 29 51 98

oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3_rc; m=2/10; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.922162; ssscCGAACTCCcss- ; cor=; Ncor= a 121 67 60 65 17 4 590 599 7 19 14 22 64 36 42 0 c 179 289 212 420 556 70 26 29 602 18 541 516 403 290 232 0 g 194 215 323 94 56 575 9 9 38 36 83 105 85 253 305 0 t 159 82 58 74 24 4 28 16 6 580 15 10 101 74 74 0

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1; m=3/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.900591; ssscCCAACTCCCssg ; cor=; Ncor= a 72 46 27 36 15 3 317 280 2 12 12 7 16 13 15 84 c 88 143 109 232 273 271 11 20 327 9 286 302 278 94 141 82 g 101 105 183 44 30 68 8 35 14 20 34 34 23 215 119 103 t 85 52 27 34 28 4 10 11 3 305 14 3 29 24 71 77

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m5; m=4/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.836397; sssCCCAACTGCCGsv ; cor=; Ncor= a 59 38 21 19 8 4 275 251 2 11 11 4 11 11 29 77 c 80 120 92 220 248 227 7 20 286 17 56 270 248 51 122 80 g 90 96 176 43 33 69 15 30 15 22 224 30 29 231 94 91 t 76 51 16 23 16 5 8 4 2 255 14 1 17 12 60 57

oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4_rc; m=5/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.836097; sssgCCAACTCCCgss ; cor=; Ncor= a 68 57 22 39 22 2 343 331 1 16 20 7 22 17 18 80 c 101 161 150 70 315 329 15 24 374 9 315 343 292 96 162 101 g 139 114 197 245 31 58 25 32 13 29 42 39 43 242 140 129 t 84 60 23 38 24 3 9 5 4 338 15 3 35 37 72 82

oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=6/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.826514; bsscCCAACTCCcss- ; cor=; Ncor= a 97 60 38 61 29 3 463 425 4 13 21 12 38 37 22 0 c 129 212 166 280 384 396 9 28 476 8 425 417 310 214 191 0 g 146 139 255 97 43 95 14 34 15 27 36 60 80 177 204 0 t 125 86 38 59 41 3 11 10 2 449 15 8 69 69 80 0

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2; m=7/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.728074; gsscCCAACTCGtcsk ; cor=; Ncor= a 120 46 34 50 13 0 438 339 3 1 8 14 34 37 29 120 c 121 228 137 324 422 365 13 63 456 15 434 66 81 313 181 110 g 123 140 286 66 37 117 16 59 21 18 38 402 59 102 222 130 t 121 71 28 45 13 3 18 24 5 451 5 3 311 33 53 125

oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2; m=8/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.714816; ksscCCAACTCGycs- ; cor=; Ncor= a 136 61 46 91 14 2 563 476 3 0 7 13 59 54 37 0 c 145 271 176 288 518 462 9 50 572 17 529 109 166 338 220 0 g 169 174 336 141 48 134 20 58 21 14 56 473 127 148 267 0 t 151 95 43 81 21 3 9 17 5 570 9 6 249 61 77 0

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5_rc; m=9/10; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.673306; -ssbgCAACTCCcss- ; cor=; Ncor= a 0 79 40 97 42 4 520 508 3 11 29 18 48 57 36 0 c 0 215 267 146 138 477 22 20 542 8 452 475 357 217 232 0 g 0 179 213 149 305 72 15 21 11 23 62 59 87 200 216 0 t 0 91 44 172 79 11 7 15 8 522 21 12 72 90 80 0

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4; m=10/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 0.6722; ssscCCAACTGGsss- ; cor=; Ncor= a 114 53 45 91 16 8 524 458 4 8 10 26 68 50 49 0 c 153 222 162 269 472 422 3 35 526 15 98 115 241 287 179 0 g 173 190 316 116 40 117 10 42 17 16 429 394 155 168 248 0 t 108 83 25 72 20 1 11 13 1 509 11 13 84 43 72 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=16; shift=0; ncol=16; ssscCCAACTCCCssg ; Alignment reference a 72 46 27 36 15 3 317 280 2 12 12 7 16 13 15 84 c 88 143 109 232 273 271 11 20 327 9 286 302 278 94 141 82 g 101 105 183 44 30 68 8 35 14 20 34 34 23 215 119 103 t 85 52 27 34 28 4 10 11 3 305 14 3 29 24 71 77

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; ssscCCAACTCCCssg ; cor=; Ncor= a 72 46 27 36 15 3 317 280 2 12 12 7 16 13 15 84 c 88 143 109 232 273 271 11 20 327 9 286 302 278 94 141 82 g 101 105 183 44 30 68 8 35 14 20 34 34 23 215 119 103 t 85 52 27 34 28 4 10 11 3 305 14 3 29 24 71 77

oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4_rc; m=2/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.947922; sssgCCAACTCCCgss ; cor=; Ncor= a 68 57 22 39 22 2 343 331 1 16 20 7 22 17 18 80 c 101 161 150 70 315 329 15 24 374 9 315 343 292 96 162 101 g 139 114 197 245 31 58 25 32 13 29 42 39 43 242 140 129 t 84 60 23 38 24 3 9 5 4 338 15 3 35 37 72 82

oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=3/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.920637; bsscCCAACTCCcss- ; cor=; Ncor= a 97 60 38 61 29 3 463 425 4 13 21 12 38 37 22 0 c 129 212 166 280 384 396 9 28 476 8 425 417 310 214 191 0 g 146 139 255 97 43 95 14 34 15 27 36 60 80 177 204 0 t 125 86 38 59 41 3 11 10 2 449 15 8 69 69 80 0

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5; m=4/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.914259; sssCCCAACTGCCGsv ; cor=; Ncor= a 59 38 21 19 8 4 275 251 2 11 11 4 11 11 29 77 c 80 120 92 220 248 227 7 20 286 17 56 270 248 51 122 80 g 90 96 176 43 33 69 15 30 15 22 224 30 29 231 94 91 t 76 51 16 23 16 5 8 4 2 255 14 1 17 12 60 57

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=5/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.900591; ssgCCGAACTCCCsss ; cor=; Ncor= a 77 44 31 34 12 2 376 384 2 12 9 8 33 13 23 105 c 126 191 93 302 374 43 14 28 410 15 356 360 320 112 166 110 g 136 150 285 58 38 389 20 12 21 26 61 65 41 283 197 124 t 98 52 28 43 13 3 27 13 4 384 11 4 43 29 51 98

oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3_rc; m=6/10; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.832418; ssscCGAACTCCcss- ; cor=; Ncor= a 121 67 60 65 17 4 590 599 7 19 14 22 64 36 42 0 c 179 289 212 420 556 70 26 29 602 18 541 516 403 290 232 0 g 194 215 323 94 56 575 9 9 38 36 83 105 85 253 305 0 t 159 82 58 74 24 4 28 16 6 580 15 10 101 74 74 0

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5_rc; m=7/10; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.788476; -ssbgCAACTCCcss- ; cor=; Ncor= a 0 79 40 97 42 4 520 508 3 11 29 18 48 57 36 0 c 0 215 267 146 138 477 22 20 542 8 452 475 357 217 232 0 g 0 179 213 149 305 72 15 21 11 23 62 59 87 200 216 0 t 0 91 44 172 79 11 7 15 8 522 21 12 72 90 80 0

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=8/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.784224; gsscCCAACTCGtcsk ; cor=; Ncor= a 120 46 34 50 13 0 438 339 3 1 8 14 34 37 29 120 c 121 228 137 324 422 365 13 63 456 15 434 66 81 313 181 110 g 123 140 286 66 37 117 16 59 21 18 38 402 59 102 222 130 t 121 71 28 45 13 3 18 24 5 451 5 3 311 33 53 125

oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=9/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.777206; ksscCCAACTCGycs- ; cor=; Ncor= a 136 61 46 91 14 2 563 476 3 0 7 13 59 54 37 0 c 145 271 176 288 518 462 9 50 572 17 529 109 166 338 220 0 g 169 174 336 141 48 134 20 58 21 14 56 473 127 148 267 0 t 151 95 43 81 21 3 9 17 5 570 9 6 249 61 77 0

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=10/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.729118; ssscCCAACTGGsss- ; cor=; Ncor= a 114 53 45 91 16 8 524 458 4 8 10 26 68 50 49 0 c 153 222 162 269 472 422 3 35 526 15 98 115 241 287 179 0 g 173 190 316 116 40 117 10 42 17 16 429 394 155 168 248 0 t 108 83 25 72 20 1 11 13 1 509 11 13 84 43 72 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift0 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=16; shift=0; ncol=16; gsscCCAACTCGtcsk ; Alignment reference a 120 46 34 50 13 0 438 339 3 1 8 14 34 37 29 120 c 121 228 137 324 422 365 13 63 456 15 434 66 81 313 181 110 g 123 140 286 66 37 117 16 59 21 18 38 402 59 102 222 130 t 121 71 28 45 13 3 18 24 5 451 5 3 311 33 53 125

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/9; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; gsscCCAACTCGtcsk ; cor=; Ncor= a 120 46 34 50 13 0 438 339 3 1 8 14 34 37 29 120 c 121 228 137 324 422 365 13 63 456 15 434 66 81 313 181 110 g 123 140 286 66 37 117 16 59 21 18 38 402 59 102 222 130 t 121 71 28 45 13 3 18 24 5 451 5 3 311 33 53 125

oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=2/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.923117; ksscCCAACTCGycs- ; cor=; Ncor= a 136 61 46 91 14 2 563 476 3 0 7 13 59 54 37 0 c 145 271 176 288 518 462 9 50 572 17 529 109 166 338 220 0 g 169 174 336 141 48 134 20 58 21 14 56 473 127 148 267 0 t 151 95 43 81 21 3 9 17 5 570 9 6 249 61 77 0

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=3/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.793984; ssscCCAACTGGsss- ; cor=; Ncor= a 114 53 45 91 16 8 524 458 4 8 10 26 68 50 49 0 c 153 222 162 269 472 422 3 35 526 15 98 115 241 287 179 0 g 173 190 316 116 40 117 10 42 17 16 429 394 155 168 248 0 t 108 83 25 72 20 1 11 13 1 509 11 13 84 43 72 0

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=4/9; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.784224; ssscCCAACTCCCssg ; cor=; Ncor= a 72 46 27 36 15 3 317 280 2 12 12 7 16 13 15 84 c 88 143 109 232 273 271 11 20 327 9 286 302 278 94 141 82 g 101 105 183 44 30 68 8 35 14 20 34 34 23 215 119 103 t 85 52 27 34 28 4 10 11 3 305 14 3 29 24 71 77

oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=5/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.782836; bsscCCAACTCCcss- ; cor=; Ncor= a 97 60 38 61 29 3 463 425 4 13 21 12 38 37 22 0 c 129 212 166 280 384 396 9 28 476 8 425 417 310 214 191 0 g 146 139 255 97 43 95 14 34 15 27 36 60 80 177 204 0 t 125 86 38 59 41 3 11 10 2 449 15 8 69 69 80 0

oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4_rc; m=6/9; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.735377; sssgCCAACTCCCgss ; cor=; Ncor= a 68 57 22 39 22 2 343 331 1 16 20 7 22 17 18 80 c 101 161 150 70 315 329 15 24 374 9 315 343 292 96 162 101 g 139 114 197 245 31 58 25 32 13 29 42 39 43 242 140 129 t 84 60 23 38 24 3 9 5 4 338 15 3 35 37 72 82

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=7/9; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.728074; ssgCCGAACTCCCsss ; cor=; Ncor= a 77 44 31 34 12 2 376 384 2 12 9 8 33 13 23 105 c 126 191 93 302 374 43 14 28 410 15 356 360 320 112 166 110 g 136 150 285 58 38 389 20 12 21 26 61 65 41 283 197 124 t 98 52 28 43 13 3 27 13 4 384 11 4 43 29 51 98

oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3_rc; m=8/9; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.72148; ssscCGAACTCCcss- ; cor=; Ncor= a 121 67 60 65 17 4 590 599 7 19 14 22 64 36 42 0 c 179 289 212 420 556 70 26 29 602 18 541 516 403 290 232 0 g 194 215 323 94 56 575 9 9 38 36 83 105 85 253 305 0 t 159 82 58 74 24 4 28 16 6 580 15 10 101 74 74 0

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5_rc; m=9/9; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.632095; -ssbgCAACTCCcss- ; cor=; Ncor= a 0 79 40 97 42 4 520 508 3 11 29 18 48 57 36 0 c 0 215 267 146 138 477 22 20 542 8 452 475 357 217 232 0 g 0 179 213 149 305 72 15 21 11 23 62 59 87 200 216 0 t 0 91 44 172 79 11 7 15 8 522 21 12 72 90 80 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift1 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=14; shift=1; ncol=15; -ssgGGAGTTGcvss ; Alignment reference a 0 80 90 72 12 21 522 8 15 7 11 79 172 44 91 c 0 216 200 87 59 62 23 11 21 15 72 305 149 213 179 g 0 232 217 357 475 452 8 542 20 22 477 138 146 267 215 t 0 36 57 48 18 29 11 3 508 520 4 42 97 40 79

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -ssgGGAGTTGcvss ; cor=; Ncor= a 0 80 90 72 12 21 522 8 15 7 11 79 172 44 91 c 0 216 200 87 59 62 23 11 21 15 72 305 149 213 179 g 0 232 217 357 475 452 8 542 20 22 477 138 146 267 215 t 0 36 57 48 18 29 11 3 508 520 4 42 97 40 79

oligos_6nt_test_vs_ctrl_m1_rc_shift1 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1_rc; m=2/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.864542; -ssgGGAGTTGGgss ; cor=; Ncor= a 0 80 69 69 8 15 449 2 10 11 3 41 59 38 86 c 0 204 177 80 60 36 27 15 34 14 95 43 97 255 139 g 0 191 214 310 417 425 8 476 28 9 396 384 280 166 212 t 0 22 37 38 12 21 13 4 425 463 3 29 61 38 60

oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4; m=3/10; ncol2=16; w=-1; offset=-1; strand=D; shift=0; score=0.795086; sscGGGAGTTGGcss ; cor=; Ncor= a 82 72 37 35 3 15 338 4 5 9 3 24 38 23 60 c 129 140 242 43 39 42 29 13 32 25 58 31 245 197 114 g 101 162 96 292 343 315 9 374 24 15 329 315 70 150 161 t 80 18 17 22 7 20 16 1 331 343 2 22 39 22 57

oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1_rc; m=4/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.788476; cssGGGAGTTGGgss ; cor=; Ncor= a 77 71 24 29 3 14 305 3 11 10 4 28 34 27 52 c 103 119 215 23 34 34 20 14 35 8 68 30 44 183 105 g 82 141 94 278 302 286 9 327 20 11 271 273 232 109 143 t 84 15 13 16 7 12 12 2 280 317 3 15 36 27 46

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3; m=5/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.738764; -ssgGGAGTTCGgss ; cor=; Ncor= a 0 74 74 101 10 15 580 6 16 28 4 24 74 58 82 c 0 305 253 85 105 83 36 38 9 9 575 56 94 323 215 g 0 232 290 403 516 541 18 602 29 26 70 556 420 212 289 t 0 42 36 64 22 14 19 7 599 590 4 17 65 60 67

oligos_6nt_test_vs_ctrl_m2_rc_shift1 (oligos_6nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2_rc; m=6/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.734476; -sgrCGAGTTGGgss ; cor=; Ncor= a 0 77 61 249 6 9 570 5 17 9 3 21 81 43 95 c 0 267 148 127 473 56 14 21 58 20 134 48 141 336 174 g 0 220 338 166 109 529 17 572 50 9 462 518 288 176 271 t 0 37 54 59 13 7 0 3 476 563 2 14 91 46 61

oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5_rc; m=7/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.695196; bsCGGCAGTTGGGss ; cor=; Ncor= a 57 60 12 17 1 14 255 2 4 8 5 16 23 16 51 c 91 94 231 29 30 224 22 15 30 15 69 33 43 176 96 g 80 122 51 248 270 56 17 286 20 7 227 248 220 92 120 t 77 29 11 11 4 11 11 2 251 275 4 8 19 21 38

oligos_6nt_test_vs_ctrl_m4_rc_shift1 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4_rc; m=8/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.675082; -sssCCAGTTGGgss ; cor=; Ncor= a 0 72 43 84 13 11 509 1 13 11 1 20 72 25 83 c 0 248 168 155 394 429 16 17 42 10 117 40 116 316 190 g 0 179 287 241 115 98 15 526 35 3 422 472 269 162 222 t 0 49 50 68 26 10 8 4 458 524 8 16 91 45 53

oligos_7nt_test_vs_ctrl_m3_rc_shift0 (oligos_7nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3_rc; m=9/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.673306; sssGGGAGTTCGGcs ; cor=; Ncor= a 98 51 29 43 4 11 384 4 13 27 3 13 43 28 52 c 124 197 283 41 65 61 26 21 12 20 389 38 58 285 150 g 110 166 112 320 360 356 15 410 28 14 43 374 302 93 191 t 105 23 13 33 8 9 12 2 384 376 2 12 34 31 44

oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2_rc; m=10/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.632095; msgaCGAGTTGGgss ; cor=; Ncor= a 125 53 33 311 3 5 451 5 24 18 3 13 45 28 71 c 130 222 102 59 402 38 18 21 59 16 117 37 66 286 140 g 110 181 313 81 66 434 15 456 63 13 365 422 324 137 228 t 120 29 37 34 14 8 1 3 339 438 0 13 50 34 46

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift0 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=16; shift=0; ncol=16; sssCCCAACTGCCGsv ; Alignment reference a 59 38 21 19 8 4 275 251 2 11 11 4 11 11 29 77 c 80 120 92 220 248 227 7 20 286 17 56 270 248 51 122 80 g 90 96 176 43 33 69 15 30 15 22 224 30 29 231 94 91 t 76 51 16 23 16 5 8 4 2 255 14 1 17 12 60 57

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/9; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; sssCCCAACTGCCGsv ; cor=; Ncor= a 59 38 21 19 8 4 275 251 2 11 11 4 11 11 29 77 c 80 120 92 220 248 227 7 20 286 17 56 270 248 51 122 80 g 90 96 176 43 33 69 15 30 15 22 224 30 29 231 94 91 t 76 51 16 23 16 5 8 4 2 255 14 1 17 12 60 57

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1; m=2/9; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.914259; ssscCCAACTCCCssg ; cor=; Ncor= a 72 46 27 36 15 3 317 280 2 12 12 7 16 13 15 84 c 88 143 109 232 273 271 11 20 327 9 286 302 278 94 141 82 g 101 105 183 44 30 68 8 35 14 20 34 34 23 215 119 103 t 85 52 27 34 28 4 10 11 3 305 14 3 29 24 71 77

oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4_rc; m=3/9; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.862622; sssgCCAACTCCCgss ; cor=; Ncor= a 68 57 22 39 22 2 343 331 1 16 20 7 22 17 18 80 c 101 161 150 70 315 329 15 24 374 9 315 343 292 96 162 101 g 139 114 197 245 31 58 25 32 13 29 42 39 43 242 140 129 t 84 60 23 38 24 3 9 5 4 338 15 3 35 37 72 82

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3; m=4/9; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.836397; ssgCCGAACTCCCsss ; cor=; Ncor= a 77 44 31 34 12 2 376 384 2 12 9 8 33 13 23 105 c 126 191 93 302 374 43 14 28 410 15 356 360 320 112 166 110 g 136 150 285 58 38 389 20 12 21 26 61 65 41 283 197 124 t 98 52 28 43 13 3 27 13 4 384 11 4 43 29 51 98

oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=5/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.818931; bsscCCAACTCCcss- ; cor=; Ncor= a 97 60 38 61 29 3 463 425 4 13 21 12 38 37 22 0 c 129 212 166 280 384 396 9 28 476 8 425 417 310 214 191 0 g 146 139 255 97 43 95 14 34 15 27 36 60 80 177 204 0 t 125 86 38 59 41 3 11 10 2 449 15 8 69 69 80 0

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4; m=6/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.793758; ssscCCAACTGGsss- ; cor=; Ncor= a 114 53 45 91 16 8 524 458 4 8 10 26 68 50 49 0 c 153 222 162 269 472 422 3 35 526 15 98 115 241 287 179 0 g 173 190 316 116 40 117 10 42 17 16 429 394 155 168 248 0 t 108 83 25 72 20 1 11 13 1 509 11 13 84 43 72 0

oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3_rc; m=7/9; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.753309; ssscCGAACTCCcss- ; cor=; Ncor= a 121 67 60 65 17 4 590 599 7 19 14 22 64 36 42 0 c 179 289 212 420 556 70 26 29 602 18 541 516 403 290 232 0 g 194 215 323 94 56 575 9 9 38 36 83 105 85 253 305 0 t 159 82 58 74 24 4 28 16 6 580 15 10 101 74 74 0

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5_rc; m=8/9; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.695196; -ssbgCAACTCCcss- ; cor=; Ncor= a 0 79 40 97 42 4 520 508 3 11 29 18 48 57 36 0 c 0 215 267 146 138 477 22 20 542 8 452 475 357 217 232 0 g 0 179 213 149 305 72 15 21 11 23 62 59 87 200 216 0 t 0 91 44 172 79 11 7 15 8 522 21 12 72 90 80 0

oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2; m=9/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.66639; ksscCCAACTCGycs- ; cor=; Ncor= a 136 61 46 91 14 2 563 476 3 0 7 13 59 54 37 0 c 145 271 176 288 518 462 9 50 572 17 529 109 166 338 220 0 g 169 174 336 141 48 134 20 58 21 14 56 473 127 148 267 0 t 151 95 43 81 21 3 9 17 5 570 9 6 249 61 77 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=16; shift=0; ncol=16; sscGGGAGTTGGcsss ; Alignment reference a 82 72 37 35 3 15 338 4 5 9 3 24 38 23 60 84 c 129 140 242 43 39 42 29 13 32 25 58 31 245 197 114 139 g 101 162 96 292 343 315 9 374 24 15 329 315 70 150 161 101 t 80 18 17 22 7 20 16 1 331 343 2 22 39 22 57 68

oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; sscGGGAGTTGGcsss ; cor=; Ncor= a 82 72 37 35 3 15 338 4 5 9 3 24 38 23 60 84 c 129 140 242 43 39 42 29 13 32 25 58 31 245 197 114 139 g 101 162 96 292 343 315 9 374 24 15 329 315 70 150 161 101 t 80 18 17 22 7 20 16 1 331 343 2 22 39 22 57 68

oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1_rc; m=2/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.947922; cssGGGAGTTGGgsss ; cor=; Ncor= a 77 71 24 29 3 14 305 3 11 10 4 28 34 27 52 85 c 103 119 215 23 34 34 20 14 35 8 68 30 44 183 105 101 g 82 141 94 278 302 286 9 327 20 11 271 273 232 109 143 88 t 84 15 13 16 7 12 12 2 280 317 3 15 36 27 46 72

oligos_6nt_test_vs_ctrl_m1_rc_shift1 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1_rc; m=3/10; ncol2=15; w=0; offset=1; strand=R; shift=1; score=0.890586; -ssgGGAGTTGGgssv ; cor=; Ncor= a 0 80 69 69 8 15 449 2 10 11 3 41 59 38 86 125 c 0 204 177 80 60 36 27 15 34 14 95 43 97 255 139 146 g 0 191 214 310 417 425 8 476 28 9 396 384 280 166 212 129 t 0 22 37 38 12 21 13 4 425 463 3 29 61 38 60 97

oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5_rc; m=4/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.862622; bsCGGCAGTTGGGsss ; cor=; Ncor= a 57 60 12 17 1 14 255 2 4 8 5 16 23 16 51 76 c 91 94 231 29 30 224 22 15 30 15 69 33 43 176 96 90 g 80 122 51 248 270 56 17 286 20 7 227 248 220 92 120 80 t 77 29 11 11 4 11 11 2 251 275 4 8 19 21 38 59

oligos_7nt_test_vs_ctrl_m3_rc_shift0 (oligos_7nt_test_vs_ctrl_m3_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3_rc; m=5/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.836097; sssGGGAGTTCGGcss ; cor=; Ncor= a 98 51 29 43 4 11 384 4 13 27 3 13 43 28 52 98 c 124 197 283 41 65 61 26 21 12 20 389 38 58 285 150 136 g 110 166 112 320 360 356 15 410 28 14 43 374 302 93 191 126 t 105 23 13 33 8 9 12 2 384 376 2 12 34 31 44 77

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5; m=6/10; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.795086; -ssgGGAGTTGcvss- ; cor=; Ncor= a 0 80 90 72 12 21 522 8 15 7 11 79 172 44 91 0 c 0 216 200 87 59 62 23 11 21 15 72 305 149 213 179 0 g 0 232 217 357 475 452 8 542 20 22 477 138 146 267 215 0 t 0 36 57 48 18 29 11 3 508 520 4 42 97 40 79 0

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3; m=7/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.777744; -ssgGGAGTTCGgsss ; cor=; Ncor= a 0 74 74 101 10 15 580 6 16 28 4 24 74 58 82 159 c 0 305 253 85 105 83 36 38 9 9 575 56 94 323 215 194 g 0 232 290 403 516 541 18 602 29 26 70 556 420 212 289 179 t 0 42 36 64 22 14 19 7 599 590 4 17 65 60 67 121

oligos_6nt_test_vs_ctrl_m2_rc_shift1 (oligos_6nt_test_vs_ctrl_m2_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2_rc; m=8/10; ncol2=15; w=0; offset=1; strand=R; shift=1; score=0.759164; -sgrCGAGTTGGgssm ; cor=; Ncor= a 0 77 61 249 6 9 570 5 17 9 3 21 81 43 95 151 c 0 267 148 127 473 56 14 21 58 20 134 48 141 336 174 169 g 0 220 338 166 109 529 17 572 50 9 462 518 288 176 271 145 t 0 37 54 59 13 7 0 3 476 563 2 14 91 46 61 136

oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2_rc; m=9/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.735377; msgaCGAGTTGGgssc ; cor=; Ncor= a 125 53 33 311 3 5 451 5 24 18 3 13 45 28 71 121 c 130 222 102 59 402 38 18 21 59 16 117 37 66 286 140 123 g 110 181 313 81 66 434 15 456 63 13 365 422 324 137 228 121 t 120 29 37 34 14 8 1 3 339 438 0 13 50 34 46 120

oligos_6nt_test_vs_ctrl_m4_rc_shift1 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4_rc; m=10/10; ncol2=15; w=0; offset=1; strand=R; shift=1; score=0.71097; -sssCCAGTTGGgsss ; cor=; Ncor= a 0 72 43 84 13 11 509 1 13 11 1 20 72 25 83 108 c 0 248 168 155 394 429 16 17 42 10 117 40 116 316 190 173 g 0 179 287 241 115 98 15 526 35 3 422 472 269 162 222 153 t 0 49 50 68 26 10 8 4 458 524 8 16 91 45 53 114

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift1 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssgGGAGTTCGgsss ; Alignment reference a 0 74 74 101 10 15 580 6 16 28 4 24 74 58 82 159 c 0 305 253 85 105 83 36 38 9 9 575 56 94 323 215 194 g 0 232 290 403 516 541 18 602 29 26 70 556 420 212 289 179 t 0 42 36 64 22 14 19 7 599 590 4 17 65 60 67 121

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssgGGAGTTCGgsss ; cor=; Ncor= a 0 74 74 101 10 15 580 6 16 28 4 24 74 58 82 159 c 0 305 253 85 105 83 36 38 9 9 575 56 94 323 215 194 g 0 232 290 403 516 541 18 602 29 26 70 556 420 212 289 179 t 0 42 36 64 22 14 19 7 599 590 4 17 65 60 67 121

oligos_7nt_test_vs_ctrl_m3_rc_shift0 (oligos_7nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3_rc; m=2/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.922162; sssGGGAGTTCGGcss ; cor=; Ncor= a 98 51 29 43 4 11 384 4 13 27 3 13 43 28 52 98 c 124 197 283 41 65 61 26 21 12 20 389 38 58 285 150 136 g 110 166 112 320 360 356 15 410 28 14 43 374 302 93 191 126 t 105 23 13 33 8 9 12 2 384 376 2 12 34 31 44 77

oligos_6nt_test_vs_ctrl_m1_rc_shift1 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1_rc; m=3/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.897494; -ssgGGAGTTGGgssv ; cor=; Ncor= a 0 80 69 69 8 15 449 2 10 11 3 41 59 38 86 125 c 0 204 177 80 60 36 27 15 34 14 95 43 97 255 139 146 g 0 191 214 310 417 425 8 476 28 9 396 384 280 166 212 129 t 0 22 37 38 12 21 13 4 425 463 3 29 61 38 60 97

oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1_rc; m=4/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.832418; cssGGGAGTTGGgsss ; cor=; Ncor= a 77 71 24 29 3 14 305 3 11 10 4 28 34 27 52 85 c 103 119 215 23 34 34 20 14 35 8 68 30 44 183 105 101 g 82 141 94 278 302 286 9 327 20 11 271 273 232 109 143 88 t 84 15 13 16 7 12 12 2 280 317 3 15 36 27 46 72

oligos_6nt_test_vs_ctrl_m2_rc_shift1 (oligos_6nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2_rc; m=5/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.800987; -sgrCGAGTTGGgssm ; cor=; Ncor= a 0 77 61 249 6 9 570 5 17 9 3 21 81 43 95 151 c 0 267 148 127 473 56 14 21 58 20 134 48 141 336 174 169 g 0 220 338 166 109 529 17 572 50 9 462 518 288 176 271 145 t 0 37 54 59 13 7 0 3 476 563 2 14 91 46 61 136

oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4; m=6/10; ncol2=16; w=-1; offset=-1; strand=D; shift=0; score=0.777744; sscGGGAGTTGGcsss ; cor=; Ncor= a 82 72 37 35 3 15 338 4 5 9 3 24 38 23 60 84 c 129 140 242 43 39 42 29 13 32 25 58 31 245 197 114 139 g 101 162 96 292 343 315 9 374 24 15 329 315 70 150 161 101 t 80 18 17 22 7 20 16 1 331 343 2 22 39 22 57 68

oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m5_rc; m=7/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.753309; bsCGGCAGTTGGGsss ; cor=; Ncor= a 57 60 12 17 1 14 255 2 4 8 5 16 23 16 51 76 c 91 94 231 29 30 224 22 15 30 15 69 33 43 176 96 90 g 80 122 51 248 270 56 17 286 20 7 227 248 220 92 120 80 t 77 29 11 11 4 11 11 2 251 275 4 8 19 21 38 59

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5; m=8/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.738764; -ssgGGAGTTGcvss- ; cor=; Ncor= a 0 80 90 72 12 21 522 8 15 7 11 79 172 44 91 0 c 0 216 200 87 59 62 23 11 21 15 72 305 149 213 179 0 g 0 232 217 357 475 452 8 542 20 22 477 138 146 267 215 0 t 0 36 57 48 18 29 11 3 508 520 4 42 97 40 79 0

oligos_6nt_test_vs_ctrl_m4_rc_shift1 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4_rc; m=9/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.738286; -sssCCAGTTGGgsss ; cor=; Ncor= a 0 72 43 84 13 11 509 1 13 11 1 20 72 25 83 108 c 0 248 168 155 394 429 16 17 42 10 117 40 116 316 190 173 g 0 179 287 241 115 98 15 526 35 3 422 472 269 162 222 153 t 0 49 50 68 26 10 8 4 458 524 8 16 91 45 53 114

oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2_rc; m=10/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.72148; msgaCGAGTTGGgssc ; cor=; Ncor= a 125 53 33 311 3 5 451 5 24 18 3 13 45 28 71 121 c 130 222 102 59 402 38 18 21 59 16 117 37 66 286 140 123 g 110 181 313 81 66 434 15 456 63 13 365 422 324 137 228 121 t 120 29 37 34 14 8 1 3 339 438 0 13 50 34 46 120

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=15; shift=0; ncol=15; ksscCCAACTCGycs ; Alignment reference a 136 61 46 91 14 2 563 476 3 0 7 13 59 54 37 c 145 271 176 288 518 462 9 50 572 17 529 109 166 338 220 g 169 174 336 141 48 134 20 58 21 14 56 473 127 148 267 t 151 95 43 81 21 3 9 17 5 570 9 6 249 61 77

oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; ksscCCAACTCGycs ; cor=; Ncor= a 136 61 46 91 14 2 563 476 3 0 7 13 59 54 37 c 145 271 176 288 518 462 9 50 572 17 529 109 166 338 220 g 169 174 336 141 48 134 20 58 21 14 56 473 127 148 267 t 151 95 43 81 21 3 9 17 5 570 9 6 249 61 77

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=2/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.923117; gsscCCAACTCGtcs ; cor=; Ncor= a 120 46 34 50 13 0 438 339 3 1 8 14 34 37 29 c 121 228 137 324 422 365 13 63 456 15 434 66 81 313 181 g 123 140 286 66 37 117 16 59 21 18 38 402 59 102 222 t 121 71 28 45 13 3 18 24 5 451 5 3 311 33 53

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=3/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.88296; ssscCCAACTGGsss ; cor=; Ncor= a 114 53 45 91 16 8 524 458 4 8 10 26 68 50 49 c 153 222 162 269 472 422 3 35 526 15 98 115 241 287 179 g 173 190 316 116 40 117 10 42 17 16 429 394 155 168 248 t 108 83 25 72 20 1 11 13 1 509 11 13 84 43 72

oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=4/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.879573; bsscCCAACTCCcss ; cor=; Ncor= a 97 60 38 61 29 3 463 425 4 13 21 12 38 37 22 c 129 212 166 280 384 396 9 28 476 8 425 417 310 214 191 g 146 139 255 97 43 95 14 34 15 27 36 60 80 177 204 t 125 86 38 59 41 3 11 10 2 449 15 8 69 69 80

oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3_rc; m=5/10; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.800987; ssscCGAACTCCcss ; cor=; Ncor= a 121 67 60 65 17 4 590 599 7 19 14 22 64 36 42 c 179 289 212 420 556 70 26 29 602 18 541 516 403 290 232 g 194 215 323 94 56 575 9 9 38 36 83 105 85 253 305 t 159 82 58 74 24 4 28 16 6 580 15 10 101 74 74

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=6/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.777206; ssscCCAACTCCCss ; cor=; Ncor= a 72 46 27 36 15 3 317 280 2 12 12 7 16 13 15 c 88 143 109 232 273 271 11 20 327 9 286 302 278 94 141 g 101 105 183 44 30 68 8 35 14 20 34 34 23 215 119 t 85 52 27 34 28 4 10 11 3 305 14 3 29 24 71

oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4_rc; m=7/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.759164; sssgCCAACTCCCgs ; cor=; Ncor= a 68 57 22 39 22 2 343 331 1 16 20 7 22 17 18 c 101 161 150 70 315 329 15 24 374 9 315 343 292 96 162 g 139 114 197 245 31 58 25 32 13 29 42 39 43 242 140 t 84 60 23 38 24 3 9 5 4 338 15 3 35 37 72

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5_rc; m=8/10; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.734476; -ssbgCAACTCCcss ; cor=; Ncor= a 0 79 40 97 42 4 520 508 3 11 29 18 48 57 36 c 0 215 267 146 138 477 22 20 542 8 452 475 357 217 232 g 0 179 213 149 305 72 15 21 11 23 62 59 87 200 216 t 0 91 44 172 79 11 7 15 8 522 21 12 72 90 80

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=9/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.714816; ssgCCGAACTCCCss ; cor=; Ncor= a 77 44 31 34 12 2 376 384 2 12 9 8 33 13 23 c 126 191 93 302 374 43 14 28 410 15 356 360 320 112 166 g 136 150 285 58 38 389 20 12 21 26 61 65 41 283 197 t 98 52 28 43 13 3 27 13 4 384 11 4 43 29 51

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5; m=10/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.66639; sssCCCAACTGCCGs ; cor=; Ncor= a 59 38 21 19 8 4 275 251 2 11 11 4 11 11 29 c 80 120 92 220 248 227 7 20 286 17 56 270 248 51 122 g 90 96 176 43 33 69 15 30 15 22 224 30 29 231 94 t 76 51 16 23 16 5 8 4 2 255 14 1 17 12 60

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=15; shift=0; ncol=15; ssscCCAACTGGsss ; Alignment reference a 114 53 45 91 16 8 524 458 4 8 10 26 68 50 49 c 153 222 162 269 472 422 3 35 526 15 98 115 241 287 179 g 173 190 316 116 40 117 10 42 17 16 429 394 155 168 248 t 108 83 25 72 20 1 11 13 1 509 11 13 84 43 72
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; ssscCCAACTGGsss ; cor=; Ncor= a 114 53 45 91 16 8 524 458 4 8 10 26 68 50 49 c 153 222 162 269 472 422 3 35 526 15 98 115 241 287 179 g 173 190 316 116 40 117 10 42 17 16 429 394 155 168 248 t 108 83 25 72 20 1 11 13 1 509 11 13 84 43 72
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=2/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.88296; ksscCCAACTCGycs ; cor=; Ncor= a 136 61 46 91 14 2 563 476 3 0 7 13 59 54 37 c 145 271 176 288 518 462 9 50 572 17 529 109 166 338 220 g 169 174 336 141 48 134 20 58 21 14 56 473 127 148 267 t 151 95 43 81 21 3 9 17 5 570 9 6 249 61 77
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=3/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.805792; bsscCCAACTCCcss ; cor=; Ncor= a 97 60 38 61 29 3 463 425 4 13 21 12 38 37 22 c 129 212 166 280 384 396 9 28 476 8 425 417 310 214 191 g 146 139 255 97 43 95 14 34 15 27 36 60 80 177 204 t 125 86 38 59 41 3 11 10 2 449 15 8 69 69 80
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=4/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.793984; gsscCCAACTCGtcs ; cor=; Ncor= a 120 46 34 50 13 0 438 339 3 1 8 14 34 37 29 c 121 228 137 324 422 365 13 63 456 15 434 66 81 313 181 g 123 140 286 66 37 117 16 59 21 18 38 402 59 102 222 t 121 71 28 45 13 3 18 24 5 451 5 3 311 33 53
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5; m=5/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.793758; sssCCCAACTGCCGs ; cor=; Ncor= a 59 38 21 19 8 4 275 251 2 11 11 4 11 11 29 c 80 120 92 220 248 227 7 20 286 17 56 270 248 51 122 g 90 96 176 43 33 69 15 30 15 22 224 30 29 231 94 t 76 51 16 23 16 5 8 4 2 255 14 1 17 12 60
oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3_rc; m=6/10; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.738286; ssscCGAACTCCcss ; cor=; Ncor= a 121 67 60 65 17 4 590 599 7 19 14 22 64 36 42 c 179 289 212 420 556 70 26 29 602 18 541 516 403 290 232 g 194 215 323 94 56 575 9 9 38 36 83 105 85 253 305 t 159 82 58 74 24 4 28 16 6 580 15 10 101 74 74
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=7/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.729118; ssscCCAACTCCCss ; cor=; Ncor= a 72 46 27 36 15 3 317 280 2 12 12 7 16 13 15 c 88 143 109 232 273 271 11 20 327 9 286 302 278 94 141 g 101 105 183 44 30 68 8 35 14 20 34 34 23 215 119 t 85 52 27 34 28 4 10 11 3 305 14 3 29 24 71
oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4_rc; m=8/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.71097; sssgCCAACTCCCgs ; cor=; Ncor= a 68 57 22 39 22 2 343 331 1 16 20 7 22 17 18 c 101 161 150 70 315 329 15 24 374 9 315 343 292 96 162 g 139 114 197 245 31 58 25 32 13 29 42 39 43 242 140 t 84 60 23 38 24 3 9 5 4 338 15 3 35 37 72
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5_rc; m=9/10; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.675082; -ssbgCAACTCCcss ; cor=; Ncor= a 0 79 40 97 42 4 520 508 3 11 29 18 48 57 36 c 0 215 267 146 138 477 22 20 542 8 452 475 357 217 232 g 0 179 213 149 305 72 15 21 11 23 62 59 87 200 216 t 0 91 44 172 79 11 7 15 8 522 21 12 72 90 80
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=10/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 0.6722; ssgCCGAACTCCCss ; cor=; Ncor= a 77 44 31 34 12 2 376 384 2 12 9 8 33 13 23 c 126 191 93 302 374 43 14 28 410 15 356 360 320 112 166 g 136 150 285 58 38 389 20 12 21 26 61 65 41 283 197 t 98 52 28 43 13 3 27 13 4 384 11 4 43 29 51

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=15; shift=0; ncol=15; bsscCCAACTCCcss ; Alignment reference a 97 60 38 61 29 3 463 425 4 13 21 12 38 37 22 c 129 212 166 280 384 396 9 28 476 8 425 417 310 214 191 g 146 139 255 97 43 95 14 34 15 27 36 60 80 177 204 t 125 86 38 59 41 3 11 10 2 449 15 8 69 69 80
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; bsscCCAACTCCcss ; cor=; Ncor= a 97 60 38 61 29 3 463 425 4 13 21 12 38 37 22 c 129 212 166 280 384 396 9 28 476 8 425 417 310 214 191 g 146 139 255 97 43 95 14 34 15 27 36 60 80 177 204 t 125 86 38 59 41 3 11 10 2 449 15 8 69 69 80
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=2/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.920637; ssscCCAACTCCCss ; cor=; Ncor= a 72 46 27 36 15 3 317 280 2 12 12 7 16 13 15 c 88 143 109 232 273 271 11 20 327 9 286 302 278 94 141 g 101 105 183 44 30 68 8 35 14 20 34 34 23 215 119 t 85 52 27 34 28 4 10 11 3 305 14 3 29 24 71
oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3_rc; m=3/10; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.897494; ssscCGAACTCCcss ; cor=; Ncor= a 121 67 60 65 17 4 590 599 7 19 14 22 64 36 42 c 179 289 212 420 556 70 26 29 602 18 541 516 403 290 232 g 194 215 323 94 56 575 9 9 38 36 83 105 85 253 305 t 159 82 58 74 24 4 28 16 6 580 15 10 101 74 74
oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4_rc; m=4/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.890586; sssgCCAACTCCCgs ; cor=; Ncor= a 68 57 22 39 22 2 343 331 1 16 20 7 22 17 18 c 101 161 150 70 315 329 15 24 374 9 315 343 292 96 162 g 139 114 197 245 31 58 25 32 13 29 42 39 43 242 140 t 84 60 23 38 24 3 9 5 4 338 15 3 35 37 72
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=5/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.879573; ksscCCAACTCGycs ; cor=; Ncor= a 136 61 46 91 14 2 563 476 3 0 7 13 59 54 37 c 145 271 176 288 518 462 9 50 572 17 529 109 166 338 220 g 169 174 336 141 48 134 20 58 21 14 56 473 127 148 267 t 151 95 43 81 21 3 9 17 5 570 9 6 249 61 77
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5_rc; m=6/10; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.864542; -ssbgCAACTCCcss ; cor=; Ncor= a 0 79 40 97 42 4 520 508 3 11 29 18 48 57 36 c 0 215 267 146 138 477 22 20 542 8 452 475 357 217 232 g 0 179 213 149 305 72 15 21 11 23 62 59 87 200 216 t 0 91 44 172 79 11 7 15 8 522 21 12 72 90 80
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=7/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.826514; ssgCCGAACTCCCss ; cor=; Ncor= a 77 44 31 34 12 2 376 384 2 12 9 8 33 13 23 c 126 191 93 302 374 43 14 28 410 15 356 360 320 112 166 g 136 150 285 58 38 389 20 12 21 26 61 65 41 283 197 t 98 52 28 43 13 3 27 13 4 384 11 4 43 29 51
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5; m=8/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.818931; sssCCCAACTGCCGs ; cor=; Ncor= a 59 38 21 19 8 4 275 251 2 11 11 4 11 11 29 c 80 120 92 220 248 227 7 20 286 17 56 270 248 51 122 g 90 96 176 43 33 69 15 30 15 22 224 30 29 231 94 t 76 51 16 23 16 5 8 4 2 255 14 1 17 12 60
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=9/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.805792; ssscCCAACTGGsss ; cor=; Ncor= a 114 53 45 91 16 8 524 458 4 8 10 26 68 50 49 c 153 222 162 269 472 422 3 35 526 15 98 115 241 287 179 g 173 190 316 116 40 117 10 42 17 16 429 394 155 168 248 t 108 83 25 72 20 1 11 13 1 509 11 13 84 43 72
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=10/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.782836; gsscCCAACTCGtcs ; cor=; Ncor= a 120 46 34 50 13 0 438 339 3 1 8 14 34 37 29 c 121 228 137 324 422 365 13 63 456 15 434 66 81 313 181 g 123 140 286 66 37 117 16 59 21 18 38 402 59 102 222 t 121 71 28 45 13 3 18 24 5 451 5 3 311 33 53

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=16; shift=0; ncol=16; ssgCCGAACTCCCsss ; Alignment reference a 77 44 31 34 12 2 376 384 2 12 9 8 33 13 23 105 c 126 191 93 302 374 43 14 28 410 15 356 360 320 112 166 110 g 136 150 285 58 38 389 20 12 21 26 61 65 41 283 197 124 t 98 52 28 43 13 3 27 13 4 384 11 4 43 29 51 98
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; ssgCCGAACTCCCsss ; cor=; Ncor= a 77 44 31 34 12 2 376 384 2 12 9 8 33 13 23 105 c 126 191 93 302 374 43 14 28 410 15 356 360 320 112 166 110 g 136 150 285 58 38 389 20 12 21 26 61 65 41 283 197 124 t 98 52 28 43 13 3 27 13 4 384 11 4 43 29 51 98
oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3_rc; m=2/10; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.922162; ssscCGAACTCCcss- ; cor=; Ncor= a 121 67 60 65 17 4 590 599 7 19 14 22 64 36 42 0 c 179 289 212 420 556 70 26 29 602 18 541 516 403 290 232 0 g 194 215 323 94 56 575 9 9 38 36 83 105 85 253 305 0 t 159 82 58 74 24 4 28 16 6 580 15 10 101 74 74 0
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1; m=3/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.900591; ssscCCAACTCCCssg ; cor=; Ncor= a 72 46 27 36 15 3 317 280 2 12 12 7 16 13 15 84 c 88 143 109 232 273 271 11 20 327 9 286 302 278 94 141 82 g 101 105 183 44 30 68 8 35 14 20 34 34 23 215 119 103 t 85 52 27 34 28 4 10 11 3 305 14 3 29 24 71 77
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m5; m=4/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.836397; sssCCCAACTGCCGsv ; cor=; Ncor= a 59 38 21 19 8 4 275 251 2 11 11 4 11 11 29 77 c 80 120 92 220 248 227 7 20 286 17 56 270 248 51 122 80 g 90 96 176 43 33 69 15 30 15 22 224 30 29 231 94 91 t 76 51 16 23 16 5 8 4 2 255 14 1 17 12 60 57
oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4_rc; m=5/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.836097; sssgCCAACTCCCgss ; cor=; Ncor= a 68 57 22 39 22 2 343 331 1 16 20 7 22 17 18 80 c 101 161 150 70 315 329 15 24 374 9 315 343 292 96 162 101 g 139 114 197 245 31 58 25 32 13 29 42 39 43 242 140 129 t 84 60 23 38 24 3 9 5 4 338 15 3 35 37 72 82
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=6/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.826514; bsscCCAACTCCcss- ; cor=; Ncor= a 97 60 38 61 29 3 463 425 4 13 21 12 38 37 22 0 c 129 212 166 280 384 396 9 28 476 8 425 417 310 214 191 0 g 146 139 255 97 43 95 14 34 15 27 36 60 80 177 204 0 t 125 86 38 59 41 3 11 10 2 449 15 8 69 69 80 0
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2; m=7/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.728074; gsscCCAACTCGtcsk ; cor=; Ncor= a 120 46 34 50 13 0 438 339 3 1 8 14 34 37 29 120 c 121 228 137 324 422 365 13 63 456 15 434 66 81 313 181 110 g 123 140 286 66 37 117 16 59 21 18 38 402 59 102 222 130 t 121 71 28 45 13 3 18 24 5 451 5 3 311 33 53 125
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2; m=8/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.714816; ksscCCAACTCGycs- ; cor=; Ncor= a 136 61 46 91 14 2 563 476 3 0 7 13 59 54 37 0 c 145 271 176 288 518 462 9 50 572 17 529 109 166 338 220 0 g 169 174 336 141 48 134 20 58 21 14 56 473 127 148 267 0 t 151 95 43 81 21 3 9 17 5 570 9 6 249 61 77 0
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5_rc; m=9/10; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.673306; -ssbgCAACTCCcss- ; cor=; Ncor= a 0 79 40 97 42 4 520 508 3 11 29 18 48 57 36 0 c 0 215 267 146 138 477 22 20 542 8 452 475 357 217 232 0 g 0 179 213 149 305 72 15 21 11 23 62 59 87 200 216 0 t 0 91 44 172 79 11 7 15 8 522 21 12 72 90 80 0
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4; m=10/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 0.6722; ssscCCAACTGGsss- ; cor=; Ncor= a 114 53 45 91 16 8 524 458 4 8 10 26 68 50 49 0 c 153 222 162 269 472 422 3 35 526 15 98 115 241 287 179 0 g 173 190 316 116 40 117 10 42 17 16 429 394 155 168 248 0 t 108 83 25 72 20 1 11 13 1 509 11 13 84 43 72 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=16; shift=0; ncol=16; ssscCCAACTCCCssg ; Alignment reference a 72 46 27 36 15 3 317 280 2 12 12 7 16 13 15 84 c 88 143 109 232 273 271 11 20 327 9 286 302 278 94 141 82 g 101 105 183 44 30 68 8 35 14 20 34 34 23 215 119 103 t 85 52 27 34 28 4 10 11 3 305 14 3 29 24 71 77
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; ssscCCAACTCCCssg ; cor=; Ncor= a 72 46 27 36 15 3 317 280 2 12 12 7 16 13 15 84 c 88 143 109 232 273 271 11 20 327 9 286 302 278 94 141 82 g 101 105 183 44 30 68 8 35 14 20 34 34 23 215 119 103 t 85 52 27 34 28 4 10 11 3 305 14 3 29 24 71 77
oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4_rc; m=2/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.947922; sssgCCAACTCCCgss ; cor=; Ncor= a 68 57 22 39 22 2 343 331 1 16 20 7 22 17 18 80 c 101 161 150 70 315 329 15 24 374 9 315 343 292 96 162 101 g 139 114 197 245 31 58 25 32 13 29 42 39 43 242 140 129 t 84 60 23 38 24 3 9 5 4 338 15 3 35 37 72 82
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=3/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.920637; bsscCCAACTCCcss- ; cor=; Ncor= a 97 60 38 61 29 3 463 425 4 13 21 12 38 37 22 0 c 129 212 166 280 384 396 9 28 476 8 425 417 310 214 191 0 g 146 139 255 97 43 95 14 34 15 27 36 60 80 177 204 0 t 125 86 38 59 41 3 11 10 2 449 15 8 69 69 80 0
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5; m=4/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.914259; sssCCCAACTGCCGsv ; cor=; Ncor= a 59 38 21 19 8 4 275 251 2 11 11 4 11 11 29 77 c 80 120 92 220 248 227 7 20 286 17 56 270 248 51 122 80 g 90 96 176 43 33 69 15 30 15 22 224 30 29 231 94 91 t 76 51 16 23 16 5 8 4 2 255 14 1 17 12 60 57
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=5/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.900591; ssgCCGAACTCCCsss ; cor=; Ncor= a 77 44 31 34 12 2 376 384 2 12 9 8 33 13 23 105 c 126 191 93 302 374 43 14 28 410 15 356 360 320 112 166 110 g 136 150 285 58 38 389 20 12 21 26 61 65 41 283 197 124 t 98 52 28 43 13 3 27 13 4 384 11 4 43 29 51 98
oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3_rc; m=6/10; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.832418; ssscCGAACTCCcss- ; cor=; Ncor= a 121 67 60 65 17 4 590 599 7 19 14 22 64 36 42 0 c 179 289 212 420 556 70 26 29 602 18 541 516 403 290 232 0 g 194 215 323 94 56 575 9 9 38 36 83 105 85 253 305 0 t 159 82 58 74 24 4 28 16 6 580 15 10 101 74 74 0
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5_rc; m=7/10; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.788476; -ssbgCAACTCCcss- ; cor=; Ncor= a 0 79 40 97 42 4 520 508 3 11 29 18 48 57 36 0 c 0 215 267 146 138 477 22 20 542 8 452 475 357 217 232 0 g 0 179 213 149 305 72 15 21 11 23 62 59 87 200 216 0 t 0 91 44 172 79 11 7 15 8 522 21 12 72 90 80 0
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=8/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.784224; gsscCCAACTCGtcsk ; cor=; Ncor= a 120 46 34 50 13 0 438 339 3 1 8 14 34 37 29 120 c 121 228 137 324 422 365 13 63 456 15 434 66 81 313 181 110 g 123 140 286 66 37 117 16 59 21 18 38 402 59 102 222 130 t 121 71 28 45 13 3 18 24 5 451 5 3 311 33 53 125
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=9/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.777206; ksscCCAACTCGycs- ; cor=; Ncor= a 136 61 46 91 14 2 563 476 3 0 7 13 59 54 37 0 c 145 271 176 288 518 462 9 50 572 17 529 109 166 338 220 0 g 169 174 336 141 48 134 20 58 21 14 56 473 127 148 267 0 t 151 95 43 81 21 3 9 17 5 570 9 6 249 61 77 0
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=10/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.729118; ssscCCAACTGGsss- ; cor=; Ncor= a 114 53 45 91 16 8 524 458 4 8 10 26 68 50 49 0 c 153 222 162 269 472 422 3 35 526 15 98 115 241 287 179 0 g 173 190 316 116 40 117 10 42 17 16 429 394 155 168 248 0 t 108 83 25 72 20 1 11 13 1 509 11 13 84 43 72 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=16; shift=0; ncol=16; gsscCCAACTCGtcsk ; Alignment reference a 120 46 34 50 13 0 438 339 3 1 8 14 34 37 29 120 c 121 228 137 324 422 365 13 63 456 15 434 66 81 313 181 110 g 123 140 286 66 37 117 16 59 21 18 38 402 59 102 222 130 t 121 71 28 45 13 3 18 24 5 451 5 3 311 33 53 125
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/9; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; gsscCCAACTCGtcsk ; cor=; Ncor= a 120 46 34 50 13 0 438 339 3 1 8 14 34 37 29 120 c 121 228 137 324 422 365 13 63 456 15 434 66 81 313 181 110 g 123 140 286 66 37 117 16 59 21 18 38 402 59 102 222 130 t 121 71 28 45 13 3 18 24 5 451 5 3 311 33 53 125
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=2/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.923117; ksscCCAACTCGycs- ; cor=; Ncor= a 136 61 46 91 14 2 563 476 3 0 7 13 59 54 37 0 c 145 271 176 288 518 462 9 50 572 17 529 109 166 338 220 0 g 169 174 336 141 48 134 20 58 21 14 56 473 127 148 267 0 t 151 95 43 81 21 3 9 17 5 570 9 6 249 61 77 0
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=3/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.793984; ssscCCAACTGGsss- ; cor=; Ncor= a 114 53 45 91 16 8 524 458 4 8 10 26 68 50 49 0 c 153 222 162 269 472 422 3 35 526 15 98 115 241 287 179 0 g 173 190 316 116 40 117 10 42 17 16 429 394 155 168 248 0 t 108 83 25 72 20 1 11 13 1 509 11 13 84 43 72 0
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=4/9; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.784224; ssscCCAACTCCCssg ; cor=; Ncor= a 72 46 27 36 15 3 317 280 2 12 12 7 16 13 15 84 c 88 143 109 232 273 271 11 20 327 9 286 302 278 94 141 82 g 101 105 183 44 30 68 8 35 14 20 34 34 23 215 119 103 t 85 52 27 34 28 4 10 11 3 305 14 3 29 24 71 77
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=5/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.782836; bsscCCAACTCCcss- ; cor=; Ncor= a 97 60 38 61 29 3 463 425 4 13 21 12 38 37 22 0 c 129 212 166 280 384 396 9 28 476 8 425 417 310 214 191 0 g 146 139 255 97 43 95 14 34 15 27 36 60 80 177 204 0 t 125 86 38 59 41 3 11 10 2 449 15 8 69 69 80 0
oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4_rc; m=6/9; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.735377; sssgCCAACTCCCgss ; cor=; Ncor= a 68 57 22 39 22 2 343 331 1 16 20 7 22 17 18 80 c 101 161 150 70 315 329 15 24 374 9 315 343 292 96 162 101 g 139 114 197 245 31 58 25 32 13 29 42 39 43 242 140 129 t 84 60 23 38 24 3 9 5 4 338 15 3 35 37 72 82
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=7/9; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.728074; ssgCCGAACTCCCsss ; cor=; Ncor= a 77 44 31 34 12 2 376 384 2 12 9 8 33 13 23 105 c 126 191 93 302 374 43 14 28 410 15 356 360 320 112 166 110 g 136 150 285 58 38 389 20 12 21 26 61 65 41 283 197 124 t 98 52 28 43 13 3 27 13 4 384 11 4 43 29 51 98
oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3_rc; m=8/9; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.72148; ssscCGAACTCCcss- ; cor=; Ncor= a 121 67 60 65 17 4 590 599 7 19 14 22 64 36 42 0 c 179 289 212 420 556 70 26 29 602 18 541 516 403 290 232 0 g 194 215 323 94 56 575 9 9 38 36 83 105 85 253 305 0 t 159 82 58 74 24 4 28 16 6 580 15 10 101 74 74 0
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5_rc; m=9/9; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.632095; -ssbgCAACTCCcss- ; cor=; Ncor= a 0 79 40 97 42 4 520 508 3 11 29 18 48 57 36 0 c 0 215 267 146 138 477 22 20 542 8 452 475 357 217 232 0 g 0 179 213 149 305 72 15 21 11 23 62 59 87 200 216 0 t 0 91 44 172 79 11 7 15 8 522 21 12 72 90 80 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=14; shift=1; ncol=15; -ssgGGAGTTGcvss ; Alignment reference a 0 80 90 72 12 21 522 8 15 7 11 79 172 44 91 c 0 216 200 87 59 62 23 11 21 15 72 305 149 213 179 g 0 232 217 357 475 452 8 542 20 22 477 138 146 267 215 t 0 36 57 48 18 29 11 3 508 520 4 42 97 40 79
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -ssgGGAGTTGcvss ; cor=; Ncor= a 0 80 90 72 12 21 522 8 15 7 11 79 172 44 91 c 0 216 200 87 59 62 23 11 21 15 72 305 149 213 179 g 0 232 217 357 475 452 8 542 20 22 477 138 146 267 215 t 0 36 57 48 18 29 11 3 508 520 4 42 97 40 79
oligos_6nt_test_vs_ctrl_m1_rc_shift1 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1_rc; m=2/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.864542; -ssgGGAGTTGGgss ; cor=; Ncor= a 0 80 69 69 8 15 449 2 10 11 3 41 59 38 86 c 0 204 177 80 60 36 27 15 34 14 95 43 97 255 139 g 0 191 214 310 417 425 8 476 28 9 396 384 280 166 212 t 0 22 37 38 12 21 13 4 425 463 3 29 61 38 60
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4; m=3/10; ncol2=16; w=-1; offset=-1; strand=D; shift=0; score=0.795086; sscGGGAGTTGGcss ; cor=; Ncor= a 82 72 37 35 3 15 338 4 5 9 3 24 38 23 60 c 129 140 242 43 39 42 29 13 32 25 58 31 245 197 114 g 101 162 96 292 343 315 9 374 24 15 329 315 70 150 161 t 80 18 17 22 7 20 16 1 331 343 2 22 39 22 57
oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1_rc; m=4/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.788476; cssGGGAGTTGGgss ; cor=; Ncor= a 77 71 24 29 3 14 305 3 11 10 4 28 34 27 52 c 103 119 215 23 34 34 20 14 35 8 68 30 44 183 105 g 82 141 94 278 302 286 9 327 20 11 271 273 232 109 143 t 84 15 13 16 7 12 12 2 280 317 3 15 36 27 46
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3; m=5/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.738764; -ssgGGAGTTCGgss ; cor=; Ncor= a 0 74 74 101 10 15 580 6 16 28 4 24 74 58 82 c 0 305 253 85 105 83 36 38 9 9 575 56 94 323 215 g 0 232 290 403 516 541 18 602 29 26 70 556 420 212 289 t 0 42 36 64 22 14 19 7 599 590 4 17 65 60 67
oligos_6nt_test_vs_ctrl_m2_rc_shift1 (oligos_6nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2_rc; m=6/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.734476; -sgrCGAGTTGGgss ; cor=; Ncor= a 0 77 61 249 6 9 570 5 17 9 3 21 81 43 95 c 0 267 148 127 473 56 14 21 58 20 134 48 141 336 174 g 0 220 338 166 109 529 17 572 50 9 462 518 288 176 271 t 0 37 54 59 13 7 0 3 476 563 2 14 91 46 61
oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5_rc; m=7/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.695196; bsCGGCAGTTGGGss ; cor=; Ncor= a 57 60 12 17 1 14 255 2 4 8 5 16 23 16 51 c 91 94 231 29 30 224 22 15 30 15 69 33 43 176 96 g 80 122 51 248 270 56 17 286 20 7 227 248 220 92 120 t 77 29 11 11 4 11 11 2 251 275 4 8 19 21 38
oligos_6nt_test_vs_ctrl_m4_rc_shift1 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4_rc; m=8/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.675082; -sssCCAGTTGGgss ; cor=; Ncor= a 0 72 43 84 13 11 509 1 13 11 1 20 72 25 83 c 0 248 168 155 394 429 16 17 42 10 117 40 116 316 190 g 0 179 287 241 115 98 15 526 35 3 422 472 269 162 222 t 0 49 50 68 26 10 8 4 458 524 8 16 91 45 53
oligos_7nt_test_vs_ctrl_m3_rc_shift0 (oligos_7nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3_rc; m=9/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.673306; sssGGGAGTTCGGcs ; cor=; Ncor= a 98 51 29 43 4 11 384 4 13 27 3 13 43 28 52 c 124 197 283 41 65 61 26 21 12 20 389 38 58 285 150 g 110 166 112 320 360 356 15 410 28 14 43 374 302 93 191 t 105 23 13 33 8 9 12 2 384 376 2 12 34 31 44
oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2_rc; m=10/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.632095; msgaCGAGTTGGgss ; cor=; Ncor= a 125 53 33 311 3 5 451 5 24 18 3 13 45 28 71 c 130 222 102 59 402 38 18 21 59 16 117 37 66 286 140 g 110 181 313 81 66 434 15 456 63 13 365 422 324 137 228 t 120 29 37 34 14 8 1 3 339 438 0 13 50 34 46

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=16; shift=0; ncol=16; sssCCCAACTGCCGsv ; Alignment reference a 59 38 21 19 8 4 275 251 2 11 11 4 11 11 29 77 c 80 120 92 220 248 227 7 20 286 17 56 270 248 51 122 80 g 90 96 176 43 33 69 15 30 15 22 224 30 29 231 94 91 t 76 51 16 23 16 5 8 4 2 255 14 1 17 12 60 57
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/9; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; sssCCCAACTGCCGsv ; cor=; Ncor= a 59 38 21 19 8 4 275 251 2 11 11 4 11 11 29 77 c 80 120 92 220 248 227 7 20 286 17 56 270 248 51 122 80 g 90 96 176 43 33 69 15 30 15 22 224 30 29 231 94 91 t 76 51 16 23 16 5 8 4 2 255 14 1 17 12 60 57
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1; m=2/9; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.914259; ssscCCAACTCCCssg ; cor=; Ncor= a 72 46 27 36 15 3 317 280 2 12 12 7 16 13 15 84 c 88 143 109 232 273 271 11 20 327 9 286 302 278 94 141 82 g 101 105 183 44 30 68 8 35 14 20 34 34 23 215 119 103 t 85 52 27 34 28 4 10 11 3 305 14 3 29 24 71 77
oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4_rc; m=3/9; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.862622; sssgCCAACTCCCgss ; cor=; Ncor= a 68 57 22 39 22 2 343 331 1 16 20 7 22 17 18 80 c 101 161 150 70 315 329 15 24 374 9 315 343 292 96 162 101 g 139 114 197 245 31 58 25 32 13 29 42 39 43 242 140 129 t 84 60 23 38 24 3 9 5 4 338 15 3 35 37 72 82
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3; m=4/9; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.836397; ssgCCGAACTCCCsss ; cor=; Ncor= a 77 44 31 34 12 2 376 384 2 12 9 8 33 13 23 105 c 126 191 93 302 374 43 14 28 410 15 356 360 320 112 166 110 g 136 150 285 58 38 389 20 12 21 26 61 65 41 283 197 124 t 98 52 28 43 13 3 27 13 4 384 11 4 43 29 51 98
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=5/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.818931; bsscCCAACTCCcss- ; cor=; Ncor= a 97 60 38 61 29 3 463 425 4 13 21 12 38 37 22 0 c 129 212 166 280 384 396 9 28 476 8 425 417 310 214 191 0 g 146 139 255 97 43 95 14 34 15 27 36 60 80 177 204 0 t 125 86 38 59 41 3 11 10 2 449 15 8 69 69 80 0
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4; m=6/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.793758; ssscCCAACTGGsss- ; cor=; Ncor= a 114 53 45 91 16 8 524 458 4 8 10 26 68 50 49 0 c 153 222 162 269 472 422 3 35 526 15 98 115 241 287 179 0 g 173 190 316 116 40 117 10 42 17 16 429 394 155 168 248 0 t 108 83 25 72 20 1 11 13 1 509 11 13 84 43 72 0
oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3_rc; m=7/9; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.753309; ssscCGAACTCCcss- ; cor=; Ncor= a 121 67 60 65 17 4 590 599 7 19 14 22 64 36 42 0 c 179 289 212 420 556 70 26 29 602 18 541 516 403 290 232 0 g 194 215 323 94 56 575 9 9 38 36 83 105 85 253 305 0 t 159 82 58 74 24 4 28 16 6 580 15 10 101 74 74 0
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5_rc; m=8/9; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.695196; -ssbgCAACTCCcss- ; cor=; Ncor= a 0 79 40 97 42 4 520 508 3 11 29 18 48 57 36 0 c 0 215 267 146 138 477 22 20 542 8 452 475 357 217 232 0 g 0 179 213 149 305 72 15 21 11 23 62 59 87 200 216 0 t 0 91 44 172 79 11 7 15 8 522 21 12 72 90 80 0
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2; m=9/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.66639; ksscCCAACTCGycs- ; cor=; Ncor= a 136 61 46 91 14 2 563 476 3 0 7 13 59 54 37 0 c 145 271 176 288 518 462 9 50 572 17 529 109 166 338 220 0 g 169 174 336 141 48 134 20 58 21 14 56 473 127 148 267 0 t 151 95 43 81 21 3 9 17 5 570 9 6 249 61 77 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=16; shift=0; ncol=16; sscGGGAGTTGGcsss ; Alignment reference a 82 72 37 35 3 15 338 4 5 9 3 24 38 23 60 84 c 129 140 242 43 39 42 29 13 32 25 58 31 245 197 114 139 g 101 162 96 292 343 315 9 374 24 15 329 315 70 150 161 101 t 80 18 17 22 7 20 16 1 331 343 2 22 39 22 57 68
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; sscGGGAGTTGGcsss ; cor=; Ncor= a 82 72 37 35 3 15 338 4 5 9 3 24 38 23 60 84 c 129 140 242 43 39 42 29 13 32 25 58 31 245 197 114 139 g 101 162 96 292 343 315 9 374 24 15 329 315 70 150 161 101 t 80 18 17 22 7 20 16 1 331 343 2 22 39 22 57 68
oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1_rc; m=2/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.947922; cssGGGAGTTGGgsss ; cor=; Ncor= a 77 71 24 29 3 14 305 3 11 10 4 28 34 27 52 85 c 103 119 215 23 34 34 20 14 35 8 68 30 44 183 105 101 g 82 141 94 278 302 286 9 327 20 11 271 273 232 109 143 88 t 84 15 13 16 7 12 12 2 280 317 3 15 36 27 46 72
oligos_6nt_test_vs_ctrl_m1_rc_shift1 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1_rc; m=3/10; ncol2=15; w=0; offset=1; strand=R; shift=1; score=0.890586; -ssgGGAGTTGGgssv ; cor=; Ncor= a 0 80 69 69 8 15 449 2 10 11 3 41 59 38 86 125 c 0 204 177 80 60 36 27 15 34 14 95 43 97 255 139 146 g 0 191 214 310 417 425 8 476 28 9 396 384 280 166 212 129 t 0 22 37 38 12 21 13 4 425 463 3 29 61 38 60 97
oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5_rc; m=4/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.862622; bsCGGCAGTTGGGsss ; cor=; Ncor= a 57 60 12 17 1 14 255 2 4 8 5 16 23 16 51 76 c 91 94 231 29 30 224 22 15 30 15 69 33 43 176 96 90 g 80 122 51 248 270 56 17 286 20 7 227 248 220 92 120 80 t 77 29 11 11 4 11 11 2 251 275 4 8 19 21 38 59
oligos_7nt_test_vs_ctrl_m3_rc_shift0 (oligos_7nt_test_vs_ctrl_m3_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3_rc; m=5/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.836097; sssGGGAGTTCGGcss ; cor=; Ncor= a 98 51 29 43 4 11 384 4 13 27 3 13 43 28 52 98 c 124 197 283 41 65 61 26 21 12 20 389 38 58 285 150 136 g 110 166 112 320 360 356 15 410 28 14 43 374 302 93 191 126 t 105 23 13 33 8 9 12 2 384 376 2 12 34 31 44 77
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5; m=6/10; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.795086; -ssgGGAGTTGcvss- ; cor=; Ncor= a 0 80 90 72 12 21 522 8 15 7 11 79 172 44 91 0 c 0 216 200 87 59 62 23 11 21 15 72 305 149 213 179 0 g 0 232 217 357 475 452 8 542 20 22 477 138 146 267 215 0 t 0 36 57 48 18 29 11 3 508 520 4 42 97 40 79 0
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3; m=7/10; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.777744; -ssgGGAGTTCGgsss ; cor=; Ncor= a 0 74 74 101 10 15 580 6 16 28 4 24 74 58 82 159 c 0 305 253 85 105 83 36 38 9 9 575 56 94 323 215 194 g 0 232 290 403 516 541 18 602 29 26 70 556 420 212 289 179 t 0 42 36 64 22 14 19 7 599 590 4 17 65 60 67 121
oligos_6nt_test_vs_ctrl_m2_rc_shift1 (oligos_6nt_test_vs_ctrl_m2_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2_rc; m=8/10; ncol2=15; w=0; offset=1; strand=R; shift=1; score=0.759164; -sgrCGAGTTGGgssm ; cor=; Ncor= a 0 77 61 249 6 9 570 5 17 9 3 21 81 43 95 151 c 0 267 148 127 473 56 14 21 58 20 134 48 141 336 174 169 g 0 220 338 166 109 529 17 572 50 9 462 518 288 176 271 145 t 0 37 54 59 13 7 0 3 476 563 2 14 91 46 61 136
oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2_rc; m=9/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.735377; msgaCGAGTTGGgssc ; cor=; Ncor= a 125 53 33 311 3 5 451 5 24 18 3 13 45 28 71 121 c 130 222 102 59 402 38 18 21 59 16 117 37 66 286 140 123 g 110 181 313 81 66 434 15 456 63 13 365 422 324 137 228 121 t 120 29 37 34 14 8 1 3 339 438 0 13 50 34 46 120
oligos_6nt_test_vs_ctrl_m4_rc_shift1 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4_rc; m=10/10; ncol2=15; w=0; offset=1; strand=R; shift=1; score=0.71097; -sssCCAGTTGGgsss ; cor=; Ncor= a 0 72 43 84 13 11 509 1 13 11 1 20 72 25 83 108 c 0 248 168 155 394 429 16 17 42 10 117 40 116 316 190 173 g 0 179 287 241 115 98 15 526 35 3 422 472 269 162 222 153 t 0 49 50 68 26 10 8 4 458 524 8 16 91 45 53 114

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssgGGAGTTCGgsss ; Alignment reference a 0 74 74 101 10 15 580 6 16 28 4 24 74 58 82 159 c 0 305 253 85 105 83 36 38 9 9 575 56 94 323 215 194 g 0 232 290 403 516 541 18 602 29 26 70 556 420 212 289 179 t 0 42 36 64 22 14 19 7 599 590 4 17 65 60 67 121
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssgGGAGTTCGgsss ; cor=; Ncor= a 0 74 74 101 10 15 580 6 16 28 4 24 74 58 82 159 c 0 305 253 85 105 83 36 38 9 9 575 56 94 323 215 194 g 0 232 290 403 516 541 18 602 29 26 70 556 420 212 289 179 t 0 42 36 64 22 14 19 7 599 590 4 17 65 60 67 121
oligos_7nt_test_vs_ctrl_m3_rc_shift0 (oligos_7nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3_rc; m=2/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.922162; sssGGGAGTTCGGcss ; cor=; Ncor= a 98 51 29 43 4 11 384 4 13 27 3 13 43 28 52 98 c 124 197 283 41 65 61 26 21 12 20 389 38 58 285 150 136 g 110 166 112 320 360 356 15 410 28 14 43 374 302 93 191 126 t 105 23 13 33 8 9 12 2 384 376 2 12 34 31 44 77
oligos_6nt_test_vs_ctrl_m1_rc_shift1 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1_rc; m=3/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.897494; -ssgGGAGTTGGgssv ; cor=; Ncor= a 0 80 69 69 8 15 449 2 10 11 3 41 59 38 86 125 c 0 204 177 80 60 36 27 15 34 14 95 43 97 255 139 146 g 0 191 214 310 417 425 8 476 28 9 396 384 280 166 212 129 t 0 22 37 38 12 21 13 4 425 463 3 29 61 38 60 97
oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1_rc; m=4/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.832418; cssGGGAGTTGGgsss ; cor=; Ncor= a 77 71 24 29 3 14 305 3 11 10 4 28 34 27 52 85 c 103 119 215 23 34 34 20 14 35 8 68 30 44 183 105 101 g 82 141 94 278 302 286 9 327 20 11 271 273 232 109 143 88 t 84 15 13 16 7 12 12 2 280 317 3 15 36 27 46 72
oligos_6nt_test_vs_ctrl_m2_rc_shift1 (oligos_6nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2_rc; m=5/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.800987; -sgrCGAGTTGGgssm ; cor=; Ncor= a 0 77 61 249 6 9 570 5 17 9 3 21 81 43 95 151 c 0 267 148 127 473 56 14 21 58 20 134 48 141 336 174 169 g 0 220 338 166 109 529 17 572 50 9 462 518 288 176 271 145 t 0 37 54 59 13 7 0 3 476 563 2 14 91 46 61 136
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4; m=6/10; ncol2=16; w=-1; offset=-1; strand=D; shift=0; score=0.777744; sscGGGAGTTGGcsss ; cor=; Ncor= a 82 72 37 35 3 15 338 4 5 9 3 24 38 23 60 84 c 129 140 242 43 39 42 29 13 32 25 58 31 245 197 114 139 g 101 162 96 292 343 315 9 374 24 15 329 315 70 150 161 101 t 80 18 17 22 7 20 16 1 331 343 2 22 39 22 57 68
oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m5_rc; m=7/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.753309; bsCGGCAGTTGGGsss ; cor=; Ncor= a 57 60 12 17 1 14 255 2 4 8 5 16 23 16 51 76 c 91 94 231 29 30 224 22 15 30 15 69 33 43 176 96 90 g 80 122 51 248 270 56 17 286 20 7 227 248 220 92 120 80 t 77 29 11 11 4 11 11 2 251 275 4 8 19 21 38 59
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5; m=8/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.738764; -ssgGGAGTTGcvss- ; cor=; Ncor= a 0 80 90 72 12 21 522 8 15 7 11 79 172 44 91 0 c 0 216 200 87 59 62 23 11 21 15 72 305 149 213 179 0 g 0 232 217 357 475 452 8 542 20 22 477 138 146 267 215 0 t 0 36 57 48 18 29 11 3 508 520 4 42 97 40 79 0
oligos_6nt_test_vs_ctrl_m4_rc_shift1 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4_rc; m=9/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.738286; -sssCCAGTTGGgsss ; cor=; Ncor= a 0 72 43 84 13 11 509 1 13 11 1 20 72 25 83 108 c 0 248 168 155 394 429 16 17 42 10 117 40 116 316 190 173 g 0 179 287 241 115 98 15 526 35 3 422 472 269 162 222 153 t 0 49 50 68 26 10 8 4 458 524 8 16 91 45 53 114
oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2_rc; m=10/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.72148; msgaCGAGTTGGgssc ; cor=; Ncor= a 125 53 33 311 3 5 451 5 24 18 3 13 45 28 71 121 c 130 222 102 59 402 38 18 21 59 16 117 37 66 286 140 123 g 110 181 313 81 66 434 15 456 63 13 365 422 324 137 228 121 t 120 29 37 34 14 8 1 3 339 438 0 13 50 34 46 120

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=15; shift=0; ncol=15; ksscCCAACTCGycs ; Alignment reference a 136 61 46 91 14 2 563 476 3 0 7 13 59 54 37 c 145 271 176 288 518 462 9 50 572 17 529 109 166 338 220 g 169 174 336 141 48 134 20 58 21 14 56 473 127 148 267 t 151 95 43 81 21 3 9 17 5 570 9 6 249 61 77
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; ksscCCAACTCGycs ; cor=; Ncor= a 136 61 46 91 14 2 563 476 3 0 7 13 59 54 37 c 145 271 176 288 518 462 9 50 572 17 529 109 166 338 220 g 169 174 336 141 48 134 20 58 21 14 56 473 127 148 267 t 151 95 43 81 21 3 9 17 5 570 9 6 249 61 77
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=2/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.923117; gsscCCAACTCGtcs ; cor=; Ncor= a 120 46 34 50 13 0 438 339 3 1 8 14 34 37 29 c 121 228 137 324 422 365 13 63 456 15 434 66 81 313 181 g 123 140 286 66 37 117 16 59 21 18 38 402 59 102 222 t 121 71 28 45 13 3 18 24 5 451 5 3 311 33 53
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=3/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.88296; ssscCCAACTGGsss ; cor=; Ncor= a 114 53 45 91 16 8 524 458 4 8 10 26 68 50 49 c 153 222 162 269 472 422 3 35 526 15 98 115 241 287 179 g 173 190 316 116 40 117 10 42 17 16 429 394 155 168 248 t 108 83 25 72 20 1 11 13 1 509 11 13 84 43 72
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=4/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.879573; bsscCCAACTCCcss ; cor=; Ncor= a 97 60 38 61 29 3 463 425 4 13 21 12 38 37 22 c 129 212 166 280 384 396 9 28 476 8 425 417 310 214 191 g 146 139 255 97 43 95 14 34 15 27 36 60 80 177 204 t 125 86 38 59 41 3 11 10 2 449 15 8 69 69 80
oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3_rc; m=5/10; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.800987; ssscCGAACTCCcss ; cor=; Ncor= a 121 67 60 65 17 4 590 599 7 19 14 22 64 36 42 c 179 289 212 420 556 70 26 29 602 18 541 516 403 290 232 g 194 215 323 94 56 575 9 9 38 36 83 105 85 253 305 t 159 82 58 74 24 4 28 16 6 580 15 10 101 74 74
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=6/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.777206; ssscCCAACTCCCss ; cor=; Ncor= a 72 46 27 36 15 3 317 280 2 12 12 7 16 13 15 c 88 143 109 232 273 271 11 20 327 9 286 302 278 94 141 g 101 105 183 44 30 68 8 35 14 20 34 34 23 215 119 t 85 52 27 34 28 4 10 11 3 305 14 3 29 24 71
oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4_rc; m=7/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.759164; sssgCCAACTCCCgs ; cor=; Ncor= a 68 57 22 39 22 2 343 331 1 16 20 7 22 17 18 c 101 161 150 70 315 329 15 24 374 9 315 343 292 96 162 g 139 114 197 245 31 58 25 32 13 29 42 39 43 242 140 t 84 60 23 38 24 3 9 5 4 338 15 3 35 37 72
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5_rc; m=8/10; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.734476; -ssbgCAACTCCcss ; cor=; Ncor= a 0 79 40 97 42 4 520 508 3 11 29 18 48 57 36 c 0 215 267 146 138 477 22 20 542 8 452 475 357 217 232 g 0 179 213 149 305 72 15 21 11 23 62 59 87 200 216 t 0 91 44 172 79 11 7 15 8 522 21 12 72 90 80
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=9/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.714816; ssgCCGAACTCCCss ; cor=; Ncor= a 77 44 31 34 12 2 376 384 2 12 9 8 33 13 23 c 126 191 93 302 374 43 14 28 410 15 356 360 320 112 166 g 136 150 285 58 38 389 20 12 21 26 61 65 41 283 197 t 98 52 28 43 13 3 27 13 4 384 11 4 43 29 51
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5; m=10/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.66639; sssCCCAACTGCCGs ; cor=; Ncor= a 59 38 21 19 8 4 275 251 2 11 11 4 11 11 29 c 80 120 92 220 248 227 7 20 286 17 56 270 248 51 122 g 90 96 176 43 33 69 15 30 15 22 224 30 29 231 94 t 76 51 16 23 16 5 8 4 2 255 14 1 17 12 60