position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084248_2026-01-22.084248_6xcnbh/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title WT24h-constitutive -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084248_2026-01-22.084248_6xcnbh/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084248_2026-01-22.084248_6xcnbh/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084248_2026-01-22.084248_6xcnbh/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 574 Sum of sequence lengths 284172 Min sequence length 0 Max sequence length 1000 Average sequence length 495 Possible positions 284172 Oligonucleotide statistics: Total occurrences 282801 Position interval parameters: Position interval 20 Number of windows 50 Total positions 284172 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 36 700 2 -24 [-479,-460] -469.5 41 798 3 -23 [-459,-440] -449.5 50 897 4 -22 [-439,-420] -429.5 59 1125 5 -21 [-419,-400] -409.5 67 1276 6 -20 [-399,-380] -389.5 82 1447 7 -19 [-379,-360] -369.5 96 1798 8 -18 [-359,-340] -349.5 116 2104 9 -17 [-339,-320] -329.5 141 2585 10 -16 [-319,-300] -309.5 171 3126 11 -15 [-299,-280] -289.5 193 3666 12 -14 [-279,-260] -269.5 220 4118 13 -13 [-259,-240] -249.5 255 4767 14 -12 [-239,-220] -229.5 280 5354 15 -11 [-219,-200] -209.5 321 6078 16 -10 [-199,-180] -189.5 365 6862 17 -9 [-179,-160] -169.5 421 7963 18 -8 [-159,-140] -149.5 491 9126 19 -7 [-139,-120] -129.5 533 10273 20 -6 [-119,-100] -109.5 563 10932 21 -5 [-99,-80] -89.5 574 11437 22 -4 [-79,-60] -69.5 574 11480 23 -3 [-59,-40] -49.5 574 11480 24 -2 [-39,-20] -29.5 574 11480 25 -1 [-19,0] -9.5 574 11480 26 0 [1,20] 10.5 574 11480 27 1 [21,40] 30.5 574 11480 28 2 [41,60] 50.5 574 11480 29 3 [61,80] 70.5 574 11480 30 4 [81,100] 90.5 574 11425 31 5 [101,120] 110.5 562 10905 32 6 [121,140] 130.5 531 10238 33 7 [141,160] 150.5 486 9062 34 8 [161,180] 170.5 416 7899 35 9 [181,200] 190.5 362 6813 36 10 [201,220] 210.5 319 6035 37 11 [221,240] 230.5 279 5331 38 12 [241,260] 250.5 253 4738 39 13 [261,280] 270.5 218 4087 40 14 [281,300] 290.5 193 3643 41 15 [301,320] 310.5 170 3099 42 16 [321,340] 330.5 138 2561 43 17 [341,360] 350.5 114 2086 44 18 [361,380] 370.5 95 1785 45 19 [381,400] 390.5 81 1435 46 20 [401,420] 410.5 66 1268 47 21 [421,440] 430.5 59 1113 48 22 [441,460] 450.5 50 889 49 23 [461,480] 470.5 41 792 50 24 [481,500] 490.5 36 696 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 40118 | 68.8 | 49 | 3.2e-02 | 0.13 | 0.89 | 1 | 102 | 104 | 141 | 163 | 193 | 179 | 262 | 293 | 345 | 475 | 465 | 580 | 675 | 729 | 915 | 984 | 1081 | 1265 | 1418 | 1558 | 1568 | 1535 | 1656 | 1678 | 1690 | 1723 | 1673 | 1673 | 1694 | 1584 | 1566 | 1413 | 1263 | 1123 | 956 | 865 | 683 | 651 | 544 | 503 | 427 | 346 | 282 | 234 | 188 | 188 | 135 | 135 | 121 | 94 |
| a | a | 39870 | 60.3 | 49 | 1.3e-01 | 0.52 | 0.29 | 2 | 104 | 109 | 100 | 155 | 181 | 221 | 228 | 297 | 383 | 423 | 524 | 561 | 647 | 743 | 842 | 957 | 1106 | 1239 | 1479 | 1490 | 1567 | 1640 | 1691 | 1673 | 1743 | 1697 | 1658 | 1597 | 1603 | 1544 | 1481 | 1477 | 1247 | 1088 | 928 | 802 | 790 | 659 | 583 | 478 | 412 | 351 | 277 | 236 | 205 | 162 | 162 | 119 | 112 | 99 |
| g | g | 101003 | 48.4 | 49 | 5.0e-01 | 2 | -0.30 | 3 | 221 | 296 | 325 | 414 | 453 | 520 | 669 | 742 | 906 | 1135 | 1293 | 1471 | 1745 | 1891 | 2149 | 2453 | 2895 | 3284 | 3684 | 3801 | 4074 | 4068 | 3962 | 3938 | 3913 | 3962 | 4106 | 4024 | 4053 | 4053 | 3933 | 3745 | 3287 | 2846 | 2421 | 2150 | 1975 | 1697 | 1448 | 1319 | 1107 | 933 | 774 | 683 | 514 | 440 | 390 | 310 | 286 | 245 |
| c | c | 101810 | 40.3 | 49 | 8.1e-01 | 3.2 | -0.51 | 4 | 267 | 269 | 315 | 393 | 449 | 527 | 639 | 772 | 951 | 1092 | 1364 | 1486 | 1680 | 1982 | 2172 | 2468 | 2881 | 3318 | 3660 | 4029 | 4149 | 4157 | 4097 | 4091 | 4023 | 4013 | 3961 | 4086 | 4010 | 4142 | 3856 | 3585 | 3248 | 2822 | 2502 | 2218 | 1883 | 1731 | 1498 | 1316 | 1125 | 911 | 752 | 632 | 528 | 478 | 426 | 325 | 273 | 258 |
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