/var/www/html/rsat/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084248_2026-01-22.084248_6xcnbh/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084248_2026-01-22.084248_6xcnbh/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title WT24h-constitutive -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084248_2026-01-22.084248_6xcnbh/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084248_2026-01-22.084248_6xcnbh/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084248_2026-01-22.084248_6xcnbh/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	574
	Sum of sequence lengths      	284172
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	495
	Possible positions           	283598
 Oligonucleotide statistics:
	Total occurrences    	282218
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	283598
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	36	700
	2	-24	[-479,-460]	-469.5	41	798
	3	-23	[-459,-440]	-449.5	50	897
	4	-22	[-439,-420]	-429.5	59	1125
	5	-21	[-419,-400]	-409.5	67	1276
	6	-20	[-399,-380]	-389.5	82	1447
	7	-19	[-379,-360]	-369.5	96	1798
	8	-18	[-359,-340]	-349.5	116	2104
	9	-17	[-339,-320]	-329.5	141	2585
	10	-16	[-319,-300]	-309.5	171	3126
	11	-15	[-299,-280]	-289.5	193	3666
	12	-14	[-279,-260]	-269.5	220	4118
	13	-13	[-259,-240]	-249.5	255	4767
	14	-12	[-239,-220]	-229.5	280	5354
	15	-11	[-219,-200]	-209.5	321	6078
	16	-10	[-199,-180]	-189.5	365	6862
	17	-9	[-179,-160]	-169.5	421	7963
	18	-8	[-159,-140]	-149.5	491	9126
	19	-7	[-139,-120]	-129.5	533	10273
	20	-6	[-119,-100]	-109.5	563	10932
	21	-5	[-99,-80]	-89.5	574	11437
	22	-4	[-79,-60]	-69.5	574	11480
	23	-3	[-59,-40]	-49.5	574	11480
	24	-2	[-39,-20]	-29.5	574	11480
	25	-1	[-19,0]	-9.5	574	11480
	26	0	[1,20]	10.5	574	11480
	27	1	[21,40]	30.5	574	11480
	28	2	[41,60]	50.5	574	11480
	29	3	[61,80]	70.5	574	11480
	30	4	[81,100]	90.5	574	11413
	31	5	[101,120]	110.5	561	10874
	32	6	[121,140]	130.5	531	10193
	33	7	[141,160]	150.5	485	8992
	34	8	[161,180]	170.5	416	7845
	35	9	[181,200]	190.5	361	6770
	36	10	[201,220]	210.5	319	5995
	37	11	[221,240]	230.5	276	5305
	38	12	[241,260]	250.5	252	4703
	39	13	[261,280]	270.5	215	4062
	40	14	[281,300]	290.5	191	3620
	41	15	[301,320]	310.5	169	3067
	42	16	[321,340]	330.5	137	2537
	43	17	[341,360]	350.5	112	2067
	44	18	[361,380]	370.5	94	1771
	45	19	[381,400]	390.5	79	1420
	46	20	[401,420]	410.5	66	1261
	47	21	[421,440]	430.5	59	1104
	48	22	[441,460]	450.5	50	880
	49	23	[461,480]	470.5	41	787
	50	24	[481,500]	490.5	36	660

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 4740 155.5 49 5.2e-13 8.3e-12 11.08 1 12 6 19 17 24 16 29 28 28 58 40 75 75 91 102 107 109 138 151 179 181 181 202 227 249 269 244 222 225 181 182 161 139 126 99 88 63 69 48 60 41 25 27 25 24 26 11 13 21 7
aa aa 4641 152.3 49 1.6e-12 2.6e-11 10.59 2 14 12 13 17 19 28 30 21 39 54 46 72 59 81 90 99 112 134 172 144 192 199 248 236 281 234 192 195 198 151 163 173 131 108 93 83 100 75 67 51 52 33 25 20 18 19 16 11 13 8
gg gg 31325 73.6 49 1.3e-02 0.21 0.68 3 59 87 105 127 140 157 204 221 264 349 395 475 581 616 664 785 896 1043 1164 1142 1299 1296 1210 1184 1164 1178 1307 1216 1259 1226 1240 1151 1035 907 752 664 625 543 437 432 326 290 246 222 152 122 108 94 95 71
tg tg 14630 62.3 49 9.6e-02 1.5 -0.18 4 34 47 52 71 70 68 102 117 131 185 166 203 251 253 326 364 384 496 512 525 565 526 610 594 618 639 597 600 666 581 568 528 454 412 357 294 264 213 183 177 166 138 110 93 82 70 43 48 46 31
at at 4961 57.2 49 2.0e-01 3.2 -0.50 5 14 14 11 18 32 26 27 43 51 56 58 55 86 88 132 121 154 157 198 199 190 188 224 207 183 189 203 210 215 203 201 184 163 127 119 91 68 66 87 55 41 47 36 21 27 18 17 16 14 11
cc cc 31788 52.5 49 3.4e-01 5.4 -0.74 6 77 87 103 117 130 173 204 246 302 322 436 473 556 652 648 776 901 1073 1138 1294 1299 1342 1320 1263 1270 1202 1229 1259 1236 1296 1206 1117 975 882 789 691 542 538 475 412 334 273 230 192 171 160 129 91 78 79
gt gt 16484 48.5 49 4.9e-01 7.9 -0.90 7 34 59 54 70 82 69 125 121 153 193 186 246 279 289 345 424 478 505 567 639 630 617 660 688 687 696 718 672 693 649 637 597 494 476 402 361 293 281 211 223 181 145 116 106 68 77 57 50 43 38
ac ac 16879 48.2 49 5.0e-01 8.1 -0.91 8 48 42 39 63 80 94 93 133 156 173 234 237 273 316 336 407 473 520 620 623 672 711 678 719 755 725 698 653 700 680 588 581 524 450 408 350 351 283 227 223 183 149 115 109 84 73 74 61 54 41
ta ta 2754 48.0 49 5.1e-01 8.2 -0.92 9 8 6 10 13 10 11 13 22 19 29 44 39 53 58 57 66 61 77 103 103 99 125 113 109 128 119 121 117 110 108 126 102 87 78 52 60 42 44 38 27 24 33 17 16 7 9 8 10 11 12
ca ca 14417 44.9 49 6.4e-01 10 -1.01 10 39 34 28 62 63 72 77 120 145 146 201 210 230 269 331 375 390 464 504 583 573 580 598 616 591 630 604 577 571 547 520 486 435 417 370 283 283 245 200 184 148 118 101 84 77 61 58 42 42 33
gc gc 35003 44.5 49 6.6e-01 11 -1.02 11 82 100 116 149 144 187 228 263 319 400 478 512 574 657 782 817 981 1170 1248 1374 1441 1411 1351 1354 1321 1377 1351 1428 1374 1452 1361 1253 1161 967 844 745 682 574 518 426 404 340 271 235 190 158 149 105 97 82
tc tc 17919 43.5 49 7.0e-01 11 -1.05 12 47 45 60 62 89 84 118 126 167 203 215 263 296 327 430 447 527 554 652 751 723 703 730 748 695 696 711 734 691 713 684 617 576 499 441 416 309 323 273 233 194 149 123 100 73 83 72 62 43 42
ag ag 13305 40.9 49 7.9e-01 13 -1.10 13 28 41 37 57 50 73 78 100 137 140 186 197 229 258 284 330 366 428 489 524 513 542 541 511 524 549 564 539 490 509 526 529 415 394 303 271 268 233 199 147 132 115 99 81 76 52 55 31 31 34
ga ga 17970 40.5 49 8.0e-01 13 -1.11 14 46 50 50 68 87 107 112 137 170 192 234 238 311 329 358 427 540 566 705 646 704 744 740 712 741 711 730 708 727 721 681 728 568 476 408 369 365 287 270 227 187 152 134 115 96 80 71 59 47 39
cg cg 41550 39.2 49 8.4e-01 13 -1.13 15 107 122 130 157 192 219 275 309 390 458 555 594 664 777 879 986 1223 1336 1509 1630 1698 1686 1604 1656 1588 1612 1618 1682 1646 1731 1600 1500 1359 1120 998 906 801 703 612 552 470 387 316 274 200 190 187 135 111 96
ct ct 13852 37.1 49 8.9e-01 14 -1.16 16 44 26 54 57 64 63 83 97 114 166 172 209 230 284 314 331 367 445 509 522 578 549 575 555 574 569 510 568 557 563 523 469 458 386 329 323 249 226 202 163 157 123 101 78 75 63 49 52 41 36 
 Host name	rsat
 Job started	2026-01-22.084254
 Job done	2026-01-22.084256
 Seconds	1.8
	user	1.8
	system	0.02
	cuser	0
;	csystem	0