/var/www/html/rsat/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084309_2026-01-22.084309_ujjUO0/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084309_2026-01-22.084309_ujjUO0/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title WT24h-hupA_sensitive -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084309_2026-01-22.084309_ujjUO0/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084309_2026-01-22.084309_ujjUO0/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084309_2026-01-22.084309_ujjUO0/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	16361
	Sum of sequence lengths      	8196618
	Min sequence length          	0
	Max sequence length          	501
	Average sequence length      	500
	Possible positions           	8180257
 Oligonucleotide statistics:
	Total occurrences    	7955557
 Position interval parameters:
	Position interval    	20
	Number of windows    	26
	Total positions      	8180257
	Degrees of freedom   	25
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-13	[-259,-240]	-249.5	16359	179949
	2	-12	[-239,-220]	-229.5	16360	327200
	3	-11	[-219,-200]	-209.5	16360	327200
	4	-10	[-199,-180]	-189.5	16360	327200
	5	-9	[-179,-160]	-169.5	16360	327200
	6	-8	[-159,-140]	-149.5	16360	327200
	7	-7	[-139,-120]	-129.5	16361	327220
	8	-6	[-119,-100]	-109.5	16361	327220
	9	-5	[-99,-80]	-89.5	16361	327220
	10	-4	[-79,-60]	-69.5	16361	327220
	11	-3	[-59,-40]	-49.5	16361	327220
	12	-2	[-39,-20]	-29.5	16361	327220
	13	-1	[-19,0]	-9.5	16361	327220
	14	0	[1,20]	10.5	16361	327220
	15	1	[21,40]	30.5	16361	327220
	16	2	[41,60]	50.5	16361	327220
	17	3	[61,80]	70.5	16361	327220
	18	4	[81,100]	90.5	16361	327220
	19	5	[101,120]	110.5	16361	327220
	20	6	[121,140]	130.5	16361	327218
	21	7	[141,160]	150.5	16360	327200
	22	8	[161,180]	170.5	16360	327200
	23	9	[181,200]	190.5	16360	327200
	24	10	[201,220]	210.5	16360	327200
	25	11	[221,240]	230.5	16360	327199
	26	12	[241,260]	250.5	16359	147231

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-249.5         	occurrences in window	1	[-259,-240]
	11	-229.5         	occurrences in window	2	[-239,-220]
	12	-209.5         	occurrences in window	3	[-219,-200]
	13	-189.5         	occurrences in window	4	[-199,-180]
	14	-169.5         	occurrences in window	5	[-179,-160]
	15	-149.5         	occurrences in window	6	[-159,-140]
	16	-129.5         	occurrences in window	7	[-139,-120]
	17	-109.5         	occurrences in window	8	[-119,-100]
	18	-89.5          	occurrences in window	9	[-99,-80]
	19	-69.5          	occurrences in window	10	[-79,-60]
	20	-49.5          	occurrences in window	11	[-59,-40]
	21	-29.5          	occurrences in window	12	[-39,-20]
	22	-9.5           	occurrences in window	13	[-19,0]
	23	10.5           	occurrences in window	14	[1,20]
	24	30.5           	occurrences in window	15	[21,40]
	25	50.5           	occurrences in window	16	[41,60]
	26	70.5           	occurrences in window	17	[61,80]
	27	90.5           	occurrences in window	18	[81,100]
	28	110.5          	occurrences in window	19	[101,120]
	29	130.5          	occurrences in window	20	[121,140]
	30	150.5          	occurrences in window	21	[141,160]
	31	170.5          	occurrences in window	22	[161,180]
	32	190.5          	occurrences in window	23	[181,200]
	33	210.5          	occurrences in window	24	[201,220]
	34	230.5          	occurrences in window	25	[221,240]
	35	250.5          	occurrences in window	26	[241,260]
seq id occ chi2 df Pval Eval sig rank -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5
ca ca 396925 45.2 25 8.0e-03 0.13 0.90 1 9055 15789 15903 15818 15714 16051 15818 15865 16094 15929 15837 16080 16145 15865 15743 15871 15740 16113 15733 15985 15657 15636 15727 15718 15951 7088
gg gg 918415 34.6 25 9.6e-02 1.5 -0.19 2 20352 36673 36704 36586 36948 36605 36753 36818 36543 36716 36887 36459 36465 36397 36896 36703 36705 36798 36485 36534 36733 36851 36585 37112 37290 16817
ac ac 457702 33.0 25 1.3e-01 2.1 -0.33 3 10297 18456 18229 18238 18144 18304 18175 18109 18234 18416 18363 18380 18590 18369 18075 18408 18386 18205 18327 18609 18256 18316 18388 18157 18026 8245
ag ag 377749 31.0 25 1.9e-01 3 -0.48 4 8452 14996 15148 15176 15040 15275 15186 15081 15032 14993 14855 14942 15208 14899 15151 15171 14886 15180 15113 15134 15187 15187 15169 15104 15455 6729
at at 143125 30.1 25 2.2e-01 3.5 -0.55 5 3138 5694 5732 5754 5759 5708 5739 5689 5875 5862 5618 5858 5653 5767 5644 5729 5657 5861 5819 5661 5732 5624 5549 5687 5697 2619
tt tt 121987 29.6 25 2.4e-01 3.8 -0.58 6 2586 4944 4868 4927 4830 4902 4782 4952 5011 4757 4948 4980 4856 4821 4902 4990 4876 4758 4859 4980 4874 4798 4806 4866 4894 2220
gc gc 995915 27.8 25 3.2e-01 5.1 -0.71 7 22356 39872 39966 39668 39564 40006 39964 39727 39564 39660 39703 39897 39975 40029 39839 39689 39640 39835 39869 39477 39828 39825 39961 39796 40039 18166
tc tc 506166 27.7 25 3.2e-01 5.2 -0.71 8 10990 20557 20149 20390 20337 20032 20145 20342 20502 20324 20296 20133 20030 20108 19959 20305 20281 20405 20220 20334 20150 20211 20128 20352 20316 9170
ta ta 75634 26.1 25 4.0e-01 6.4 -0.81 9 1614 3050 3064 3004 3005 3088 2944 3024 3053 3071 3015 2994 3066 3046 3017 3043 3012 3145 2956 3018 3014 3023 3146 2891 2976 1355
cg cg 1179022 24.6 25 4.8e-01 7.7 -0.89 10 26215 47450 46982 46935 47049 47064 47234 46961 46722 47278 47057 47054 47121 47285 46979 46948 47472 47028 47206 47047 47313 47276 47358 47316 47130 21542
ga ga 505911 23.0 25 5.8e-01 9.3 -0.97 11 11232 20225 20184 20299 20245 20168 20234 20076 20042 20214 20036 20079 20210 20184 20125 20275 20264 19971 20527 20445 20467 20371 20312 20276 20323 9127
ct ct 383841 22.7 25 5.9e-01 9.5 -0.98 12 8393 15639 15398 15480 15328 15174 15244 15426 15545 15192 15428 15198 15317 15394 15230 15423 15316 15195 15424 15325 15394 15269 15455 15324 15315 7015
gt gt 456095 22.1 25 6.3e-01 10 -1.00 13 9903 18344 18194 18304 18205 18119 18176 18329 18234 18309 18259 18128 17878 18134 18456 18288 18269 18464 18162 18249 18166 18319 18223 18290 18454 8239
cc cc 913369 20.9 25 7.0e-01 11 -1.05 14 20254 36466 36532 36679 36823 36404 36569 36536 36474 36597 36529 36572 36701 36577 36702 36038 36546 36400 36562 36483 36363 36604 36463 36390 36388 16717
aa aa 122483 20.3 25 7.3e-01 12 -1.07 15 2766 4931 4906 4801 4917 4959 4945 4827 4880 4779 4950 4895 4951 4968 4903 4961 4836 4841 4889 5011 4943 4837 4798 4900 4922 2167
tg tg 401218 20.0 25 7.5e-01 12 -1.08 16 8817 16135 16031 16111 16040 15939 15989 16112 16051 15982 16021 16081 15800 16084 16347 16087 15914 16033 16155 15932 16107 15955 15939 15994 16263 7299 
 Host name	rsat
 Job started	2026-01-22.085013
 Job done	2026-01-22.085105
 Seconds	52.31
	user	52.31
	system	0.01
	cuser	0
;	csystem	0