/var/www/html/rsat/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084309_2026-01-22.084309_ujjUO0/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084309_2026-01-22.084309_ujjUO0/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title WT24h-hupA_sensitive -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084309_2026-01-22.084309_ujjUO0/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084309_2026-01-22.084309_ujjUO0/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084309_2026-01-22.084309_ujjUO0/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	551
	Sum of sequence lengths      	225925
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	410
	Possible positions           	225374
 Oligonucleotide statistics:
	Total occurrences    	223126
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	225374
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	11	200
	2	-24	[-479,-460]	-469.5	14	259
	3	-23	[-459,-440]	-449.5	17	316
	4	-22	[-439,-420]	-429.5	20	379
	5	-21	[-419,-400]	-409.5	24	442
	6	-20	[-399,-380]	-389.5	29	518
	7	-19	[-379,-360]	-369.5	33	628
	8	-18	[-359,-340]	-349.5	42	750
	9	-17	[-339,-320]	-329.5	55	1004
	10	-16	[-319,-300]	-309.5	77	1334
	11	-15	[-299,-280]	-289.5	95	1738
	12	-14	[-279,-260]	-269.5	124	2151
	13	-13	[-259,-240]	-249.5	158	2832
	14	-12	[-239,-220]	-229.5	186	3442
	15	-11	[-219,-200]	-209.5	229	4199
	16	-10	[-199,-180]	-189.5	276	5048
	17	-9	[-179,-160]	-169.5	339	6198
	18	-8	[-159,-140]	-149.5	421	7651
	19	-7	[-139,-120]	-129.5	478	9007
	20	-6	[-119,-100]	-109.5	534	10094
	21	-5	[-99,-80]	-89.5	551	10957
	22	-4	[-79,-60]	-69.5	551	11020
	23	-3	[-59,-40]	-49.5	551	11020
	24	-2	[-39,-20]	-29.5	551	11020
	25	-1	[-19,0]	-9.5	551	11020
	26	0	[1,20]	10.5	551	11020
	27	1	[21,40]	30.5	551	11020
	28	2	[41,60]	50.5	551	11020
	29	3	[61,80]	70.5	551	11020
	30	4	[81,100]	90.5	551	10923
	31	5	[101,120]	110.5	532	9985
	32	6	[121,140]	130.5	476	8898
	33	7	[141,160]	150.5	414	7490
	34	8	[161,180]	170.5	332	6075
	35	9	[181,200]	190.5	272	4953
	36	10	[201,220]	210.5	228	4114
	37	11	[221,240]	230.5	182	3386
	38	12	[241,260]	250.5	154	2767
	39	13	[261,280]	270.5	118	2090
	40	14	[281,300]	290.5	94	1702
	41	15	[301,320]	310.5	76	1290
	42	16	[321,340]	330.5	54	977
	43	17	[341,360]	350.5	39	732
	44	18	[361,380]	370.5	33	620
	45	19	[381,400]	390.5	28	509
	46	20	[401,420]	410.5	23	433
	47	21	[421,440]	430.5	20	373
	48	22	[441,460]	450.5	17	310
	49	23	[461,480]	470.5	14	252
	50	24	[481,500]	490.5	10	188

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
aa aa 3799 150.4 49 3.1e-12 4.9e-11 10.31 1 9 7 6 3 9 14 9 6 20 26 28 33 32 48 56 69 93 123 139 145 195 201 243 235 279 235 186 158 175 144 149 146 115 94 62 64 51 42 36 25 23 13 13 9 6 6 6 3 6 4
tt tt 3994 108.3 49 2.3e-06 3.7e-05 4.43 2 2 3 5 5 10 3 9 14 11 28 23 48 48 52 78 68 81 121 146 190 195 207 178 221 229 274 227 207 211 175 168 131 133 114 71 72 49 45 28 30 23 13 14 5 11 11 2 2 2 1
gg gg 24543 64.8 49 6.5e-02 1 -0.02 3 25 29 37 42 48 54 68 76 109 153 177 230 359 387 457 584 684 815 977 1072 1204 1190 1143 1152 1147 1114 1247 1217 1176 1148 1095 972 845 722 571 430 436 308 213 173 139 111 90 77 70 41 43 36 33 17
at at 4006 61.4 49 1.1e-01 1.8 -0.25 4 6 7 4 11 7 13 11 12 13 20 22 29 57 68 86 95 120 145 169 191 172 182 219 191 168 170 207 208 203 216 185 172 136 94 78 68 46 46 50 33 12 12 14 7 6 6 3 4 9 3
tc tc 14316 57.3 49 1.9e-01 3.1 -0.49 5 8 13 28 18 29 28 35 53 59 80 101 127 171 206 296 328 406 483 591 679 699 684 714 705 670 702 692 713 679 706 646 538 516 370 286 304 187 189 142 94 78 59 51 20 25 30 26 22 17 13
cc cc 24883 54.9 49 2.6e-01 4.2 -0.62 6 23 26 36 33 42 60 66 89 123 133 203 234 328 403 454 597 720 899 1032 1163 1212 1243 1264 1171 1211 1132 1149 1192 1205 1250 1098 936 802 634 572 450 349 320 229 213 141 100 67 67 52 51 37 32 22 18
ca ca 11305 53.7 49 3.0e-01 4.8 -0.68 7 15 20 9 24 23 23 26 41 61 55 84 95 129 187 227 297 313 402 430 540 537 568 577 569 569 601 548 531 547 520 468 425 356 295 249 200 165 132 94 93 60 43 33 28 26 16 18 13 13 10
tg tg 11740 52.8 49 3.3e-01 5.3 -0.72 8 9 15 12 20 29 30 42 49 51 90 88 122 147 165 220 253 298 400 442 489 556 526 569 578 587 608 588 587 620 566 510 489 364 318 276 200 186 126 106 85 82 50 37 37 37 21 16 20 14 10
ac ac 13420 45.5 49 6.2e-01 9.9 -0.99 9 17 18 16 30 32 32 33 43 61 77 120 125 150 201 238 309 365 449 544 594 657 698 643 691 708 670 662 611 664 627 555 517 420 348 295 252 217 158 114 116 75 67 35 44 26 20 22 22 16 16
ta ta 2215 40.5 49 8.0e-01 13 -1.11 10 3 1 6 5 4 6 3 6 8 13 21 23 33 41 37 52 49 74 86 99 108 110 113 100 121 99 121 123 90 100 112 103 56 60 42 37 25 28 27 17 7 14 8 8 2 2 4 4 1 3
gt gt 13208 40.2 49 8.1e-01 13 -1.11 11 8 12 18 17 30 24 41 50 56 86 90 136 167 190 225 298 361 408 531 584 649 619 620 655 644 698 697 664 650 639 591 530 421 369 285 259 194 162 111 83 84 60 42 33 29 24 26 19 7 12
gc gc 27196 39.5 49 8.3e-01 13 -1.12 12 18 30 41 47 48 73 86 88 129 159 209 262 337 420 536 608 751 934 1062 1216 1335 1319 1274 1280 1259 1279 1273 1366 1316 1347 1209 1087 937 748 642 486 426 348 256 212 171 127 87 92 66 62 50 33 33 22
ag ag 10476 37.6 49 8.8e-01 14 -1.15 13 9 17 13 20 12 23 27 32 57 58 88 96 139 171 188 234 279 364 403 468 481 502 514 496 527 538 526 514 475 491 475 442 343 318 227 187 161 134 105 62 52 44 40 29 30 20 18 11 8 8
cg cg 32605 37.3 49 8.9e-01 14 -1.15 14 25 34 46 57 66 75 95 109 141 187 245 316 385 489 615 707 940 1076 1342 1456 1611 1605 1524 1569 1486 1527 1561 1595 1606 1608 1480 1293 1128 896 744 621 503 420 306 254 195 153 109 95 64 72 65 45 36 28
ct ct 11047 33.5 49 9.6e-01 15 -1.18 15 7 8 23 17 25 25 34 39 47 79 91 108 128 171 218 238 289 395 426 483 545 518 561 546 556 545 502 547 538 535 466 428 387 283 233 222 156 132 113 85 69 48 39 27 28 22 17 21 17 10
ga ga 14373 32.9 49 9.6e-01 15 -1.19 16 16 19 16 30 28 35 43 43 58 88 126 127 182 214 248 284 408 483 595 611 661 707 709 701 708 688 710 667 720 691 650 612 479 406 320 262 235 177 145 107 72 63 53 42 31 29 20 23 18 13 
 Host name	rsat
 Job started	2026-01-22.084314
 Job done	2026-01-22.084315
 Seconds	1.48
	user	1.48
	system	0.03
	cuser	0
;	csystem	0