position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084332_2026-01-22.084332_TmUoVo/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title WT24h-Sup3 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084332_2026-01-22.084332_TmUoVo/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084332_2026-01-22.084332_TmUoVo/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084332_2026-01-22.084332_TmUoVo/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 478 Sum of sequence lengths 286243 Min sequence length 0 Max sequence length 1000 Average sequence length 598 Possible positions 286243 Oligonucleotide statistics: Total occurrences 283772 Position interval parameters: Position interval 20 Number of windows 50 Total positions 286243 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 48 919 2 -24 [-479,-460] -469.5 55 1059 3 -23 [-459,-440] -449.5 66 1197 4 -22 [-439,-420] -429.5 78 1491 5 -21 [-419,-400] -409.5 88 1670 6 -20 [-399,-380] -389.5 108 1907 7 -19 [-379,-360] -369.5 124 2344 8 -18 [-359,-340] -349.5 151 2759 9 -17 [-339,-320] -329.5 177 3313 10 -16 [-319,-300] -309.5 211 3896 11 -15 [-299,-280] -289.5 242 4543 12 -14 [-279,-260] -269.5 275 5153 13 -13 [-259,-240] -249.5 318 5928 14 -12 [-239,-220] -229.5 346 6651 15 -11 [-219,-200] -209.5 385 7375 16 -10 [-199,-180] -189.5 418 8020 17 -9 [-179,-160] -169.5 458 8811 18 -8 [-159,-140] -149.5 477 9391 19 -7 [-139,-120] -129.5 478 9553 20 -6 [-119,-100] -109.5 478 9560 21 -5 [-99,-80] -89.5 478 9560 22 -4 [-79,-60] -69.5 478 9560 23 -3 [-59,-40] -49.5 478 9560 24 -2 [-39,-20] -29.5 478 9560 25 -1 [-19,0] -9.5 478 9560 26 0 [1,20] 10.5 478 9560 27 1 [21,40] 30.5 478 9560 28 2 [41,60] 50.5 478 9560 29 3 [61,80] 70.5 478 9560 30 4 [81,100] 90.5 478 9560 31 5 [101,120] 110.5 478 9560 32 6 [121,140] 130.5 478 9552 33 7 [141,160] 150.5 477 9374 34 8 [161,180] 170.5 455 8765 35 9 [181,200] 190.5 414 7982 36 10 [201,220] 210.5 384 7335 37 11 [221,240] 230.5 345 6626 38 12 [241,260] 250.5 315 5892 39 13 [261,280] 270.5 273 5116 40 14 [281,300] 290.5 242 4511 41 15 [301,320] 310.5 209 3861 42 16 [321,340] 330.5 175 3288 43 17 [341,360] 350.5 149 2733 44 18 [361,380] 370.5 123 2329 45 19 [381,400] 390.5 107 1892 46 20 [401,420] 410.5 87 1660 47 21 [421,440] 430.5 78 1478 48 22 [441,460] 450.5 66 1186 49 23 [461,480] 470.5 55 1051 50 24 [481,500] 490.5 48 912 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 40443 | 64.7 | 49 | 6.6e-02 | 0.26 | 0.58 | 1 | 132 | 141 | 187 | 217 | 251 | 237 | 348 | 403 | 453 | 579 | 578 | 713 | 833 | 905 | 1110 | 1151 | 1198 | 1280 | 1314 | 1340 | 1316 | 1307 | 1391 | 1375 | 1391 | 1443 | 1398 | 1396 | 1421 | 1324 | 1401 | 1340 | 1314 | 1263 | 1137 | 1058 | 863 | 827 | 694 | 607 | 536 | 458 | 364 | 301 | 260 | 234 | 195 | 179 | 157 | 123 |
| c | c | 101880 | 48.0 | 49 | 5.1e-01 | 2 | -0.31 | 2 | 355 | 356 | 428 | 517 | 586 | 686 | 834 | 1008 | 1218 | 1362 | 1685 | 1842 | 2067 | 2429 | 2615 | 2898 | 3163 | 3386 | 3360 | 3466 | 3404 | 3375 | 3355 | 3372 | 3349 | 3317 | 3272 | 3430 | 3267 | 3366 | 3337 | 3331 | 3343 | 3100 | 2917 | 2675 | 2377 | 2140 | 1875 | 1641 | 1389 | 1155 | 1002 | 826 | 689 | 635 | 562 | 418 | 365 | 335 |
| a | a | 40266 | 47.5 | 49 | 5.3e-01 | 2.1 | -0.33 | 3 | 136 | 152 | 139 | 209 | 243 | 285 | 321 | 385 | 492 | 538 | 654 | 713 | 815 | 922 | 1015 | 1101 | 1244 | 1280 | 1360 | 1311 | 1331 | 1404 | 1422 | 1410 | 1424 | 1421 | 1383 | 1308 | 1368 | 1324 | 1307 | 1346 | 1315 | 1234 | 1075 | 992 | 955 | 823 | 717 | 611 | 512 | 460 | 366 | 315 | 262 | 210 | 207 | 166 | 153 | 130 |
| g | g | 101183 | 44.3 | 49 | 6.7e-01 | 2.7 | -0.42 | 4 | 290 | 390 | 427 | 548 | 590 | 699 | 841 | 963 | 1150 | 1403 | 1585 | 1825 | 2153 | 2366 | 2598 | 2824 | 3146 | 3344 | 3399 | 3303 | 3385 | 3373 | 3272 | 3283 | 3257 | 3239 | 3383 | 3306 | 3364 | 3406 | 3390 | 3435 | 3329 | 3141 | 2833 | 2592 | 2431 | 2102 | 1816 | 1625 | 1396 | 1195 | 1000 | 887 | 681 | 581 | 514 | 423 | 376 | 324 |
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