/var/www/html/rsat/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084332_2026-01-22.084332_TmUoVo/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084332_2026-01-22.084332_TmUoVo/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title WT24h-Sup3 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084332_2026-01-22.084332_TmUoVo/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084332_2026-01-22.084332_TmUoVo/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084332_2026-01-22.084332_TmUoVo/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	478
	Sum of sequence lengths      	286243
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	598
	Possible positions           	285765
 Oligonucleotide statistics:
	Total occurrences    	283282
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	285765
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	48	919
	2	-24	[-479,-460]	-469.5	55	1059
	3	-23	[-459,-440]	-449.5	66	1197
	4	-22	[-439,-420]	-429.5	78	1491
	5	-21	[-419,-400]	-409.5	88	1670
	6	-20	[-399,-380]	-389.5	108	1907
	7	-19	[-379,-360]	-369.5	124	2344
	8	-18	[-359,-340]	-349.5	151	2759
	9	-17	[-339,-320]	-329.5	177	3313
	10	-16	[-319,-300]	-309.5	211	3896
	11	-15	[-299,-280]	-289.5	242	4543
	12	-14	[-279,-260]	-269.5	275	5153
	13	-13	[-259,-240]	-249.5	318	5928
	14	-12	[-239,-220]	-229.5	346	6651
	15	-11	[-219,-200]	-209.5	385	7375
	16	-10	[-199,-180]	-189.5	418	8020
	17	-9	[-179,-160]	-169.5	458	8811
	18	-8	[-159,-140]	-149.5	477	9391
	19	-7	[-139,-120]	-129.5	478	9553
	20	-6	[-119,-100]	-109.5	478	9560
	21	-5	[-99,-80]	-89.5	478	9560
	22	-4	[-79,-60]	-69.5	478	9560
	23	-3	[-59,-40]	-49.5	478	9560
	24	-2	[-39,-20]	-29.5	478	9560
	25	-1	[-19,0]	-9.5	478	9560
	26	0	[1,20]	10.5	478	9560
	27	1	[21,40]	30.5	478	9560
	28	2	[41,60]	50.5	478	9560
	29	3	[61,80]	70.5	478	9560
	30	4	[81,100]	90.5	478	9560
	31	5	[101,120]	110.5	478	9560
	32	6	[121,140]	130.5	478	9551
	33	7	[141,160]	150.5	475	9352
	34	8	[161,180]	170.5	455	8724
	35	9	[181,200]	190.5	414	7952
	36	10	[201,220]	210.5	384	7296
	37	11	[221,240]	230.5	342	6596
	38	12	[241,260]	250.5	312	5850
	39	13	[261,280]	270.5	269	5085
	40	14	[281,300]	290.5	240	4478
	41	15	[301,320]	310.5	208	3827
	42	16	[321,340]	330.5	174	3262
	43	17	[341,360]	350.5	147	2707
	44	18	[361,380]	370.5	122	2313
	45	19	[381,400]	390.5	104	1872
	46	20	[401,420]	410.5	87	1651
	47	21	[421,440]	430.5	78	1466
	48	22	[441,460]	450.5	66	1175
	49	23	[461,480]	470.5	55	1044
	50	24	[481,500]	490.5	48	864

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 4847 134.9 49 5.8e-10 9.3e-09 8.03 1 14 8 23 24 31 24 42 41 43 65 58 90 89 108 121 125 124 145 145 155 163 171 175 181 196 236 216 194 189 174 169 168 150 153 129 110 84 93 67 69 52 39 36 32 29 30 18 16 24 9
aa aa 4762 130.9 49 2.2e-09 3.5e-08 7.46 2 21 19 15 21 26 37 39 30 58 65 67 90 77 102 104 119 145 139 162 125 167 191 208 192 231 195 174 167 184 139 148 161 148 144 112 109 114 90 82 62 67 43 32 36 22 24 21 12 15 11
gg gg 31483 68.7 49 3.3e-02 0.52 0.28 3 76 116 133 175 188 212 248 284 336 431 487 581 711 764 806 902 982 1074 1073 986 1096 1102 998 1005 1002 964 1071 982 1047 1061 1058 1074 1037 997 885 793 771 663 548 523 420 378 309 285 201 159 141 125 127 96
at at 5102 67.3 49 4.2e-02 0.68 0.17 4 17 21 14 27 42 34 39 57 67 69 72 69 111 119 158 141 171 151 178 172 159 174 202 177 153 167 165 176 186 192 190 178 173 145 141 123 88 91 98 70 50 68 43 30 35 21 22 22 19 15
cc cc 31762 63.7 49 7.7e-02 1.2 -0.09 5 104 112 134 145 164 223 263 320 384 407 552 585 680 786 785 918 1011 1100 1038 1124 1077 1061 1069 1045 1046 1009 1022 1102 949 1055 1027 1048 1013 960 924 832 700 656 581 522 415 341 310 250 214 211 169 115 104 100
ta ta 2819 54.4 49 2.8e-01 4.4 -0.64 6 9 7 15 19 17 17 19 27 27 39 54 52 66 71 69 76 71 78 100 100 84 108 106 103 91 112 92 96 87 82 110 106 92 89 63 69 53 58 49 34 29 42 23 26 14 10 14 14 16 14
tc tc 18062 48.1 49 5.1e-01 8.2 -0.91 7 62 61 83 90 119 107 156 182 218 252 257 308 351 406 526 538 569 552 582 616 604 589 598 609 600 593 584 590 604 584 615 584 619 553 532 515 386 398 337 281 248 200 164 132 107 109 97 80 62 53
gc gc 35036 47.7 49 5.2e-01 8.4 -0.92 8 113 132 160 189 188 255 284 329 419 489 586 639 702 831 916 957 1066 1199 1175 1171 1158 1141 1101 1126 1106 1132 1109 1195 1144 1191 1165 1169 1158 1074 977 898 861 717 657 530 500 427 352 311 252 217 197 143 120 108
tg tg 14653 45.7 49 6.1e-01 9.7 -0.99 9 46 65 66 84 84 89 131 153 165 222 209 263 327 320 394 412 434 505 487 469 465 439 512 482 504 502 506 516 539 484 507 482 450 461 409 357 334 277 239 216 204 176 135 111 107 84 65 67 55 43
ct ct 14010 43.5 49 6.9e-01 11 -1.04 10 58 38 78 75 81 80 111 131 151 202 216 259 286 350 372 401 415 459 478 445 466 447 462 472 497 486 426 477 489 444 461 430 481 442 389 382 317 294 256 203 193 157 130 104 97 83 71 66 56 46
cg cg 41375 43.3 49 7.0e-01 11 -1.05 11 139 157 171 215 249 291 347 403 491 563 668 737 819 964 1060 1145 1294 1329 1375 1399 1393 1362 1331 1334 1323 1293 1328 1385 1346 1409 1391 1391 1394 1233 1174 1097 994 861 772 678 582 484 424 364 274 256 242 169 150 125
gt gt 16420 42.3 49 7.4e-01 12 -1.07 12 44 75 70 92 107 94 157 172 190 240 224 301 344 359 423 483 515 514 515 560 530 519 543 560 544 552 589 552 555 521 569 559 515 517 475 442 356 346 271 266 228 191 150 134 102 97 82 70 58 48
ca ca 14557 41.5 49 7.7e-01 12 -1.09 13 54 49 45 82 92 92 113 154 192 190 249 261 282 329 397 434 443 498 468 498 468 505 493 520 483 529 496 466 483 458 458 462 452 450 420 351 356 309 252 232 184 161 133 102 98 81 76 63 53 41
ac ac 16824 38.2 49 8.7e-01 14 -1.14 14 62 56 58 88 107 114 137 171 192 217 291 306 344 382 406 470 514 536 567 549 574 585 574 587 604 577 570 531 568 554 512 533 548 498 462 423 432 356 289 281 215 191 158 137 105 93 92 77 75 56
ga ga 18057 26.7 49 1.0e+00 16 -1.20 15 57 67 64 92 107 138 152 178 205 242 287 304 396 412 453 481 583 556 636 586 601 610 630 592 605 591 614 577 618 633 598 632 608 542 484 450 431 357 328 288 236 193 179 152 117 104 87 81 67 56
ag ag 13513 25.7 49 1.0e+00 16 -1.20 16 36 56 52 73 68 100 106 127 175 187 224 248 283 319 347 371 413 454 453 465 431 454 438 454 435 482 474 434 430 439 457 474 442 440 356 327 319 284 244 195 177 151 129 107 98 72 72 55 43 43 
 Host name	rsat
 Job started	2026-01-22.084338
 Job done	2026-01-22.084339
 Seconds	1.92
	user	1.92
	system	0.03
	cuser	0
;	csystem	0