position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084418_2026-01-22.084418_6mH0tk/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title WT48h_constitutive -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084418_2026-01-22.084418_6mH0tk/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084418_2026-01-22.084418_6mH0tk/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084418_2026-01-22.084418_6mH0tk/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 574 Sum of sequence lengths 301682 Min sequence length 0 Max sequence length 1000 Average sequence length 525 Possible positions 301682 Oligonucleotide statistics: Total occurrences 299994 Position interval parameters: Position interval 20 Number of windows 50 Total positions 301682 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 53 984 2 -24 [-479,-460] -469.5 58 1085 3 -23 [-459,-440] -449.5 68 1266 4 -22 [-439,-420] -429.5 76 1420 5 -21 [-419,-400] -409.5 82 1584 6 -20 [-399,-380] -389.5 95 1777 7 -19 [-379,-360] -369.5 114 2096 8 -18 [-359,-340] -349.5 127 2417 9 -17 [-339,-320] -329.5 153 2783 10 -16 [-319,-300] -309.5 180 3354 11 -15 [-299,-280] -289.5 209 3955 12 -14 [-279,-260] -269.5 243 4536 13 -13 [-259,-240] -249.5 270 5108 14 -12 [-239,-220] -229.5 313 5871 15 -11 [-219,-200] -209.5 355 6719 16 -10 [-199,-180] -189.5 409 7700 17 -9 [-179,-160] -169.5 467 8784 18 -8 [-159,-140] -149.5 521 9934 19 -7 [-139,-120] -129.5 566 10898 20 -6 [-119,-100] -109.5 574 11422 21 -5 [-99,-80] -89.5 574 11480 22 -4 [-79,-60] -69.5 574 11480 23 -3 [-59,-40] -49.5 574 11480 24 -2 [-39,-20] -29.5 574 11480 25 -1 [-19,0] -9.5 574 11480 26 0 [1,20] 10.5 574 11480 27 1 [21,40] 30.5 574 11480 28 2 [41,60] 50.5 574 11480 29 3 [61,80] 70.5 574 11480 30 4 [81,100] 90.5 574 11480 31 5 [101,120] 110.5 574 11416 32 6 [121,140] 130.5 564 10857 33 7 [141,160] 150.5 517 9875 34 8 [161,180] 170.5 462 8728 35 9 [181,200] 190.5 409 7655 36 10 [201,220] 210.5 355 6675 37 11 [221,240] 230.5 311 5836 38 12 [241,260] 250.5 269 5084 39 13 [261,280] 270.5 240 4503 40 14 [281,300] 290.5 208 3926 41 15 [301,320] 310.5 180 3329 42 16 [321,340] 330.5 152 2758 43 17 [341,360] 350.5 127 2407 44 18 [361,380] 370.5 114 2076 45 19 [381,400] 390.5 93 1763 46 20 [401,420] 410.5 82 1576 47 21 [421,440] 430.5 76 1413 48 22 [441,460] 450.5 68 1251 49 23 [461,480] 470.5 57 1081 50 24 [481,500] 490.5 53 980 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 42796 | 52.0 | 49 | 3.6e-01 | 1.4 | -0.16 | 1 | 149 | 163 | 179 | 208 | 214 | 241 | 283 | 329 | 427 | 497 | 510 | 629 | 746 | 841 | 952 | 1084 | 1215 | 1384 | 1537 | 1601 | 1601 | 1595 | 1614 | 1684 | 1753 | 1642 | 1635 | 1626 | 1688 | 1651 | 1589 | 1562 | 1412 | 1256 | 1059 | 962 | 772 | 704 | 615 | 587 | 474 | 380 | 323 | 252 | 256 | 234 | 201 | 159 | 162 | 159 |
| g | g | 106671 | 38.0 | 49 | 8.7e-01 | 3.5 | -0.54 | 2 | 339 | 383 | 458 | 513 | 568 | 601 | 779 | 850 | 968 | 1166 | 1454 | 1608 | 1708 | 2111 | 2453 | 2699 | 3124 | 3536 | 3840 | 4018 | 4029 | 4024 | 4013 | 3969 | 3990 | 4003 | 4063 | 4090 | 4031 | 4069 | 4028 | 3894 | 3493 | 3173 | 2701 | 2311 | 2094 | 1815 | 1608 | 1430 | 1200 | 1022 | 852 | 776 | 626 | 525 | 525 | 444 | 377 | 320 |
| c | c | 107926 | 35.8 | 49 | 9.2e-01 | 3.7 | -0.57 | 3 | 365 | 380 | 435 | 492 | 574 | 681 | 741 | 891 | 987 | 1220 | 1420 | 1631 | 1887 | 2088 | 2328 | 2798 | 3212 | 3598 | 3947 | 4090 | 4152 | 4121 | 4122 | 4056 | 4019 | 4103 | 4016 | 4064 | 4025 | 4107 | 4119 | 3778 | 3475 | 3108 | 2841 | 2475 | 2109 | 1811 | 1605 | 1378 | 1181 | 960 | 873 | 746 | 635 | 585 | 507 | 461 | 382 | 347 |
| a | a | 42601 | 34.6 | 49 | 9.4e-01 | 3.8 | -0.58 | 4 | 131 | 153 | 174 | 191 | 228 | 254 | 293 | 347 | 389 | 451 | 551 | 646 | 727 | 791 | 943 | 1079 | 1206 | 1396 | 1521 | 1632 | 1610 | 1660 | 1653 | 1684 | 1631 | 1652 | 1701 | 1615 | 1636 | 1574 | 1607 | 1542 | 1422 | 1163 | 1034 | 907 | 845 | 723 | 644 | 511 | 468 | 396 | 359 | 302 | 246 | 232 | 180 | 187 | 160 | 154 |
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