/var/www/html/rsat/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084429_2026-01-22.084429_vEeoc0/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084429_2026-01-22.084429_vEeoc0/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title WT48h_hupA_sensitive -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084429_2026-01-22.084429_vEeoc0/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084429_2026-01-22.084429_vEeoc0/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084429_2026-01-22.084429_vEeoc0/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	493
	Sum of sequence lengths      	239920
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	486
	Possible positions           	239427
 Oligonucleotide statistics:
	Total occurrences    	236788
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	239427
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	28	520
	2	-24	[-479,-460]	-469.5	30	567
	3	-23	[-459,-440]	-449.5	33	635
	4	-22	[-439,-420]	-429.5	39	710
	5	-21	[-419,-400]	-409.5	44	831
	6	-20	[-399,-380]	-389.5	54	975
	7	-19	[-379,-360]	-369.5	64	1198
	8	-18	[-359,-340]	-349.5	73	1371
	9	-17	[-339,-320]	-329.5	88	1603
	10	-16	[-319,-300]	-309.5	111	2015
	11	-15	[-299,-280]	-289.5	137	2556
	12	-14	[-279,-260]	-269.5	171	3077
	13	-13	[-259,-240]	-249.5	200	3676
	14	-12	[-239,-220]	-229.5	240	4448
	15	-11	[-219,-200]	-209.5	283	5286
	16	-10	[-199,-180]	-189.5	342	6289
	17	-9	[-179,-160]	-169.5	399	7427
	18	-8	[-159,-140]	-149.5	447	8514
	19	-7	[-139,-120]	-129.5	486	9376
	20	-6	[-119,-100]	-109.5	493	9815
	21	-5	[-99,-80]	-89.5	493	9860
	22	-4	[-79,-60]	-69.5	493	9860
	23	-3	[-59,-40]	-49.5	493	9860
	24	-2	[-39,-20]	-29.5	493	9860
	25	-1	[-19,0]	-9.5	493	9860
	26	0	[1,20]	10.5	493	9860
	27	1	[21,40]	30.5	493	9860
	28	2	[41,60]	50.5	493	9860
	29	3	[61,80]	70.5	493	9860
	30	4	[81,100]	90.5	493	9860
	31	5	[101,120]	110.5	493	9799
	32	6	[121,140]	130.5	483	9305
	33	7	[141,160]	150.5	444	8403
	34	8	[161,180]	170.5	392	7319
	35	9	[181,200]	190.5	341	6180
	36	10	[201,220]	210.5	283	5196
	37	11	[221,240]	230.5	237	4373
	38	12	[241,260]	250.5	198	3621
	39	13	[261,280]	270.5	167	3010
	40	14	[281,300]	290.5	135	2504
	41	15	[301,320]	310.5	111	1971
	42	16	[321,340]	330.5	87	1575
	43	17	[341,360]	350.5	72	1353
	44	18	[361,380]	370.5	64	1177
	45	19	[381,400]	390.5	52	954
	46	20	[401,420]	410.5	44	819
	47	21	[421,440]	430.5	39	698
	48	22	[441,460]	450.5	33	627
	49	23	[461,480]	470.5	29	563
	50	24	[481,500]	490.5	28	491

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 4303 117.4 49 1.5e-07 2.5e-06 5.61 1 12 10 13 15 17 10 20 28 32 39 41 50 75 93 105 100 113 127 148 186 175 209 195 174 221 231 205 185 202 207 152 150 139 107 93 94 65 52 41 36 26 20 18 16 21 16 7 5 3 4
aa aa 4137 102.0 49 1.4e-05 0.00022 3.66 2 15 10 12 15 7 21 22 29 20 28 47 61 59 72 89 79 113 116 174 169 173 173 205 206 206 211 207 165 165 131 166 158 122 106 105 74 81 57 50 35 35 27 33 21 18 13 7 10 9 10
cc cc 26054 69.1 49 3.1e-02 0.49 0.31 3 55 60 66 69 73 115 152 149 170 228 281 347 430 473 539 696 888 947 1012 1098 1127 1082 1123 1056 999 1069 1043 1046 1061 1089 1097 999 868 774 706 616 457 394 316 266 190 142 136 121 90 87 64 83 45 60
gg gg 25805 68.0 49 3.7e-02 0.6 0.23 4 54 64 66 89 121 97 136 148 176 242 295 315 373 495 609 673 823 893 1008 1044 1049 1058 1093 1020 1001 1053 1015 1061 1034 1057 1061 1049 867 866 688 534 460 410 322 267 219 181 124 132 109 76 98 63 74 43
at at 4480 65.5 49 5.8e-02 0.92 0.04 5 11 12 21 16 20 18 22 20 44 43 43 59 66 77 105 139 137 166 169 189 179 186 178 197 176 172 145 191 181 182 178 207 162 132 116 100 52 62 71 46 28 29 25 24 14 19 15 11 17 8
ct ct 11925 52.9 49 3.3e-01 5.2 -0.72 6 26 22 28 38 32 49 51 65 97 98 124 164 213 231 246 324 369 439 496 476 504 494 483 495 502 483 447 490 499 486 447 430 404 354 311 271 205 179 158 144 109 89 71 58 52 38 38 28 26 42
ac ac 14279 50.0 49 4.3e-01 6.9 -0.84 7 32 30 38 41 42 53 77 82 84 106 143 190 226 245 305 372 430 515 567 582 595 594 594 588 613 593 643 555 599 573 601 512 511 419 334 307 284 206 180 142 115 94 106 92 55 55 38 43 45 33
tc tc 15307 49.3 49 4.6e-01 7.4 -0.87 8 32 34 41 32 49 64 77 85 123 114 135 200 265 292 325 429 489 561 602 660 626 620 622 643 646 602 612 604 637 614 603 564 541 489 412 348 267 230 213 181 102 106 75 65 64 61 45 37 34 35
ca ca 12421 49.2 49 4.7e-01 7.5 -0.87 9 33 35 33 34 48 58 76 70 76 96 132 172 198 228 282 350 399 444 467 470 516 521 509 501 514 513 547 492 486 525 511 440 444 359 307 272 239 182 159 119 118 73 86 71 51 48 19 33 38 27
gc gc 28591 44.5 49 6.6e-01 10 -1.02 10 57 65 74 80 108 118 143 162 187 263 342 361 418 552 623 753 906 1040 1100 1120 1196 1176 1121 1132 1142 1150 1111 1198 1162 1216 1189 1083 1013 896 794 623 553 442 360 306 276 187 172 149 116 86 80 70 63 57
ta ta 2432 43.2 49 7.1e-01 11 -1.05 11 6 7 5 7 12 10 10 11 18 24 19 34 37 40 62 56 64 104 91 102 105 98 97 105 97 102 93 123 106 90 93 97 95 70 47 53 44 39 21 22 20 17 12 12 8 6 13 8 11 9
ag ag 11286 43.1 49 7.1e-01 11 -1.06 12 20 34 23 39 45 61 54 76 71 96 133 149 172 212 255 295 332 413 434 462 471 459 441 472 439 476 502 473 439 456 442 459 409 312 279 252 226 172 128 103 109 80 65 51 45 46 26 33 24 21
tg tg 12683 42.1 49 7.5e-01 12 -1.08 13 36 33 43 53 45 45 60 74 93 106 154 176 191 231 285 337 368 419 507 464 491 521 512 533 540 522 522 540 517 533 524 494 439 390 331 271 207 194 163 145 122 93 74 58 55 44 44 31 28 25
ga ga 15201 39.6 49 8.3e-01 13 -1.12 14 28 35 40 59 43 66 64 95 105 125 166 198 217 271 336 385 448 538 611 665 628 609 618 654 622 608 662 603 624 592 618 646 538 444 371 335 278 225 194 151 115 112 91 85 58 64 48 45 36 32
gt gt 14025 35.1 49 9.3e-01 15 -1.17 15 37 41 37 41 53 53 72 88 86 109 142 182 212 251 330 370 400 477 547 573 522 572 569 582 604 586 614 594 589 572 574 546 512 448 357 296 267 222 170 150 111 97 69 51 60 52 49 35 31 23
cg cg 33859 28.5 49 9.9e-01 16 -1.20 16 66 75 95 82 116 137 162 189 221 298 359 416 498 642 727 871 1062 1214 1315 1429 1381 1372 1361 1354 1391 1349 1371 1393 1399 1398 1408 1320 1209 1094 905 730 671 523 433 371 271 228 196 171 138 108 107 92 79 62 
 Host name	rsat
 Job started	2026-01-22.084435
 Job done	2026-01-22.084437
 Seconds	1.7
	user	1.7
	system	0.02
	cuser	0
;	csystem	0