One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084429_2026-01-22.084429_vEeoc0/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084429_2026-01-22.084429_vEeoc0/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift1 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssgGGAGTTGCtsss ; Alignment reference a 0 42 66 65 6 11 331 3 20 5 3 27 38 14 68 90 c 0 171 121 80 31 39 24 15 35 5 44 269 88 111 108 118 g 0 135 149 189 327 305 6 354 25 14 321 55 80 234 147 108 t 0 25 37 39 9 18 12 1 293 349 5 22 167 14 50 57

oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/8; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssgGGAGTTGCtsss ; cor=; Ncor= a 0 42 66 65 6 11 331 3 20 5 3 27 38 14 68 90 c 0 171 121 80 31 39 24 15 35 5 44 269 88 111 108 118 g 0 135 149 189 327 305 6 354 25 14 321 55 80 234 147 108 t 0 25 37 39 9 18 12 1 293 349 5 22 167 14 50 57

oligos_7nt_test_vs_ctrl_m1_rc_shift1 (oligos_7nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1_rc; m=2/8; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.861452; -ssGGGAGTTGGCgss ; cor=; Ncor= a 0 40 58 26 2 13 244 4 9 8 3 14 21 13 57 51 c 0 113 97 38 33 36 18 17 11 14 31 26 199 71 72 89 g 0 113 104 204 241 213 11 264 22 16 250 233 45 192 113 82 t 0 19 26 17 9 23 12 0 243 247 1 12 20 9 43 63

oligos_6nt_test_vs_ctrl_m1_rc_shift1 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1_rc; m=3/8; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.815666; -ssgGGAGTTGGcss- ; cor=; Ncor= a 0 45 52 40 3 11 268 2 8 9 3 15 29 19 60 0 c 0 120 106 53 25 29 21 15 15 14 40 28 187 126 81 0 g 0 120 117 186 275 249 8 291 17 13 266 252 61 145 123 0 t 0 24 34 30 6 20 12 1 269 273 0 14 32 19 45 0

oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4_rc; m=4/8; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.756301; -sgcCGAGTTGGCGsy ; cor=; Ncor= a 0 23 43 36 8 8 224 3 11 4 1 13 16 14 41 47 c 0 117 56 136 179 22 15 14 17 11 29 28 194 56 64 77 g 0 96 133 56 60 210 10 233 15 8 217 207 21 170 104 61 t 0 14 18 22 3 10 1 0 207 227 3 2 19 10 41 65

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5_rc; m=5/8; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.724363; -sgvCGAGTTGGcss- ; cor=; Ncor= a 0 42 49 96 7 7 298 2 7 8 0 10 33 29 59 0 c 0 148 71 88 234 30 13 10 18 12 56 32 175 125 89 0 g 0 116 183 104 73 277 12 311 17 7 262 276 76 150 138 0 t 0 17 20 35 9 9 0 0 281 296 5 5 39 19 37 0

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5; m=6/8; ncol2=16; w=-1; offset=-1; strand=D; shift=0; score=0.717561; sssGGCAGTTGaGssg ; cor=; Ncor= a 33 39 26 11 1 14 168 0 6 7 4 120 13 8 42 35 c 56 66 104 18 11 140 18 6 10 6 35 30 25 102 53 44 g 71 68 50 162 183 34 9 189 8 10 155 39 141 72 65 72 t 37 24 17 6 2 9 2 2 173 174 3 8 18 15 37 46

oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2_rc; m=7/8; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.710751; sssGGCAGTTGGCgss ; cor=; Ncor= a 40 36 19 11 3 13 207 3 7 3 3 14 19 7 44 52 c 77 95 147 16 21 181 15 14 18 11 38 25 173 60 66 80 g 71 93 63 216 219 32 13 227 31 10 201 193 32 165 96 64 t 58 22 17 3 3 20 11 2 190 222 4 14 22 14 40 50

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3; m=8/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.681883; -ssgGGAGTTCGgss- ; cor=; Ncor= a 0 49 46 64 8 11 356 2 12 17 1 9 42 36 67 0 c 0 179 151 63 57 54 27 24 6 8 356 34 53 197 120 0 g 0 145 171 229 329 333 8 376 17 13 47 353 267 137 175 0 t 0 32 37 49 11 7 14 3 370 367 1 9 43 35 43 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift1 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=13; shift=1; ncol=14; -ssgCCAACTGGss ; Alignment reference a 0 40 24 64 9 9 307 284 1 4 11 7 40 39 c 0 132 148 79 269 259 4 26 312 7 40 61 123 161 g 0 109 134 152 32 58 10 13 12 10 267 252 102 92 t 0 47 22 33 18 2 7 5 3 307 10 8 63 36

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/7; ncol2=13; w=0; offset=0; strand=D; shift=1; score= 1; -ssgCCAACTGGss ; cor=; Ncor= a 0 40 24 64 9 9 307 284 1 4 11 7 40 39 c 0 132 148 79 269 259 4 26 312 7 40 61 123 161 g 0 109 134 152 32 58 10 13 12 10 267 252 102 92 t 0 47 22 33 18 2 7 5 3 307 10 8 63 36

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=2/7; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.814328; -ssgCCAACTCGbc ; cor=; Ncor= a 0 37 19 39 5 5 296 281 0 0 9 9 35 20 c 0 138 150 76 276 262 7 17 311 12 277 73 104 183 g 0 89 125 175 32 56 12 18 10 13 30 234 88 71 t 0 59 29 33 10 0 8 7 2 298 7 7 96 49

oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=3/7; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.738163; rsCGCCAACTCGgc ; cor=; Ncor= a 65 41 10 19 2 3 227 207 0 1 10 3 22 18 c 61 104 170 21 207 217 8 15 233 10 210 60 56 133 g 77 64 56 194 28 29 11 17 14 15 22 179 136 56 t 47 41 14 16 13 1 4 11 3 224 8 8 36 43

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=4/7; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.714116; -ssgCCAACTCCcs ; cor=; Ncor= a 0 45 19 32 14 0 273 269 1 12 20 6 30 34 c 0 123 145 61 252 266 13 17 291 8 249 275 186 117 g 0 81 126 187 28 40 14 15 15 21 29 25 53 106 t 0 60 19 29 15 3 9 8 2 268 11 3 40 52

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=5/7; ncol2=16; w=-1; offset=-1; strand=D; shift=0; score=0.669403; sscGCCAACTGCCs ; cor=; Ncor= a 50 40 14 22 14 4 222 190 2 11 20 3 3 17 c 64 96 165 32 193 201 10 31 227 13 32 219 216 63 g 80 66 60 173 25 38 11 18 14 15 181 21 16 147 t 52 44 7 19 14 3 3 7 3 207 13 3 11 19

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=6/7; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.668838; sscGCCAACTCCCs ; cor=; Ncor= a 63 43 9 20 12 1 247 243 0 12 23 9 17 26 c 82 113 192 45 233 250 16 22 264 11 213 241 204 104 g 89 72 71 199 26 31 14 11 17 18 36 33 38 97 t 51 57 13 21 14 3 8 9 4 244 13 2 26 58

oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5_rc; m=7/7; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.585259; cssCtCAACTGCCs ; cor=; Ncor= a 46 37 15 18 8 3 174 173 2 2 9 2 6 17 c 72 65 72 141 39 155 10 8 189 9 34 183 162 50 g 44 53 102 25 30 35 6 10 6 18 140 11 18 104 t 35 42 8 13 120 4 7 6 0 168 14 1 11 26

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift1 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssGGGAGTTCGGCss ; Alignment reference a 0 35 37 39 9 10 269 3 10 16 1 10 27 7 54 68 c 0 156 115 29 56 48 24 15 13 20 294 17 22 269 90 97 g 0 105 145 223 239 258 16 300 27 13 25 290 255 31 148 96 t 0 25 24 30 17 5 12 3 271 272 1 4 17 14 29 60

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/6; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssGGGAGTTCGGCss ; cor=; Ncor= a 0 35 37 39 9 10 269 3 10 16 1 10 27 7 54 68 c 0 156 115 29 56 48 24 15 13 20 294 17 22 269 90 97 g 0 105 145 223 239 258 16 300 27 13 25 290 255 31 148 96 t 0 25 24 30 17 5 12 3 271 272 1 4 17 14 29 60

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=2/6; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.909667; -ssgGGAGTTCGgss- ; cor=; Ncor= a 0 49 46 64 8 11 356 2 12 17 1 9 42 36 67 0 c 0 179 151 63 57 54 27 24 6 8 356 34 53 197 120 0 g 0 145 171 229 329 333 8 376 17 13 47 353 267 137 175 0 t 0 32 37 49 11 7 14 3 370 367 1 9 43 35 43 0

oligos_7nt_test_vs_ctrl_m1_rc_shift1 (oligos_7nt_test_vs_ctrl_m1_rc)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1_rc; m=3/6; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.722896; -ssGGGAGTTGGCgss ; cor=; Ncor= a 0 40 58 26 2 13 244 4 9 8 3 14 21 13 57 51 c 0 113 97 38 33 36 18 17 11 14 31 26 199 71 72 89 g 0 113 104 204 241 213 11 264 22 16 250 233 45 192 113 82 t 0 19 26 17 9 23 12 0 243 247 1 12 20 9 43 63

oligos_6nt_test_vs_ctrl_m1_rc_shift1 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1_rc; m=4/6; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.722189; -ssgGGAGTTGGcss- ; cor=; Ncor= a 0 45 52 40 3 11 268 2 8 9 3 15 29 19 60 0 c 0 120 106 53 25 29 21 15 15 14 40 28 187 126 81 0 g 0 120 117 186 275 249 8 291 17 13 266 252 61 145 123 0 t 0 24 34 30 6 20 12 1 269 273 0 14 32 19 45 0

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5_rc; m=5/6; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.674287; -sgvCGAGTTGGcss- ; cor=; Ncor= a 0 42 49 96 7 7 298 2 7 8 0 10 33 29 59 0 c 0 148 71 88 234 30 13 10 18 12 56 32 175 125 89 0 g 0 116 183 104 73 277 12 311 17 7 262 276 76 150 138 0 t 0 17 20 35 9 9 0 0 281 296 5 5 39 19 37 0

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m5; m=6/6; ncol2=16; w=-1; offset=-1; strand=D; shift=0; score=0.660215; sssGGCAGTTGaGssg ; cor=; Ncor= a 33 39 26 11 1 14 168 0 6 7 4 120 13 8 42 35 c 56 66 104 18 11 140 18 6 10 6 35 30 25 102 53 44 g 71 68 50 162 183 34 9 189 8 10 155 39 141 72 65 72 t 37 24 17 6 2 9 2 2 173 174 3 8 18 15 37 46

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift0 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=16; shift=0; ncol=16; sssGGCAGTTGaGssg ; Alignment reference a 33 39 26 11 1 14 168 0 6 7 4 120 13 8 42 35 c 56 66 104 18 11 140 18 6 10 6 35 30 25 102 53 44 g 71 68 50 162 183 34 9 189 8 10 155 39 141 72 65 72 t 37 24 17 6 2 9 2 2 173 174 3 8 18 15 37 46

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/8; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; sssGGCAGTTGaGssg ; cor=; Ncor= a 33 39 26 11 1 14 168 0 6 7 4 120 13 8 42 35 c 56 66 104 18 11 140 18 6 10 6 35 30 25 102 53 44 g 71 68 50 162 183 34 9 189 8 10 155 39 141 72 65 72 t 37 24 17 6 2 9 2 2 173 174 3 8 18 15 37 46

oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2_rc; m=2/8; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.839965; sssGGCAGTTGGCgss ; cor=; Ncor= a 40 36 19 11 3 13 207 3 7 3 3 14 19 7 44 52 c 77 95 147 16 21 181 15 14 18 11 38 25 173 60 66 80 g 71 93 63 216 219 32 13 227 31 10 201 193 32 165 96 64 t 58 22 17 3 3 20 11 2 190 222 4 14 22 14 40 50

oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4; m=3/8; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.717561; -ssgGGAGTTGCtsss ; cor=; Ncor= a 0 42 66 65 6 11 331 3 20 5 3 27 38 14 68 90 c 0 171 121 80 31 39 24 15 35 5 44 269 88 111 108 118 g 0 135 149 189 327 305 6 354 25 14 321 55 80 234 147 108 t 0 25 37 39 9 18 12 1 293 349 5 22 167 14 50 57

oligos_7nt_test_vs_ctrl_m1_rc_shift1 (oligos_7nt_test_vs_ctrl_m1_rc)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1_rc; m=4/8; ncol2=15; w=0; offset=1; strand=R; shift=1; score=0.713271; -ssGGGAGTTGGCgss ; cor=; Ncor= a 0 40 58 26 2 13 244 4 9 8 3 14 21 13 57 51 c 0 113 97 38 33 36 18 17 11 14 31 26 199 71 72 89 g 0 113 104 204 241 213 11 264 22 16 250 233 45 192 113 82 t 0 19 26 17 9 23 12 0 243 247 1 12 20 9 43 63

oligos_6nt_test_vs_ctrl_m1_rc_shift1 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1_rc; m=5/8; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.677273; -ssgGGAGTTGGcss- ; cor=; Ncor= a 0 45 52 40 3 11 268 2 8 9 3 15 29 19 60 0 c 0 120 106 53 25 29 21 15 15 14 40 28 187 126 81 0 g 0 120 117 186 275 249 8 291 17 13 266 252 61 145 123 0 t 0 24 34 30 6 20 12 1 269 273 0 14 32 19 45 0

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3; m=6/8; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.660215; -ssGGGAGTTCGGCss ; cor=; Ncor= a 0 35 37 39 9 10 269 3 10 16 1 10 27 7 54 68 c 0 156 115 29 56 48 24 15 13 20 294 17 22 269 90 97 g 0 105 145 223 239 258 16 300 27 13 25 290 255 31 148 96 t 0 25 24 30 17 5 12 3 271 272 1 4 17 14 29 60

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3; m=7/8; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.630112; -ssgGGAGTTCGgss- ; cor=; Ncor= a 0 49 46 64 8 11 356 2 12 17 1 9 42 36 67 0 c 0 179 151 63 57 54 27 24 6 8 356 34 53 197 120 0 g 0 145 171 229 329 333 8 376 17 13 47 353 267 137 175 0 t 0 32 37 49 11 7 14 3 370 367 1 9 43 35 43 0

oligos_6nt_test_vs_ctrl_m2_rc_shift2 (oligos_6nt_test_vs_ctrl_m2_rc)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2_rc; m=8/8; ncol2=13; w=0; offset=2; strand=R; shift=2; score=0.585259; --ssCCAGTTGGcss- ; cor=; Ncor= a 0 0 36 63 8 10 307 3 5 7 2 18 33 22 47 0 c 0 0 92 102 252 267 10 12 13 10 58 32 152 134 109 0 g 0 0 161 123 61 40 7 312 26 4 259 269 79 148 132 0 t 0 0 39 40 7 11 4 1 284 307 9 9 64 24 40 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift0 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=16; shift=0; ncol=16; sscGCCAACTGCCsss ; Alignment reference a 50 40 14 22 14 4 222 190 2 11 20 3 3 17 22 58 c 64 96 165 32 193 201 10 31 227 13 32 219 216 63 93 71 g 80 66 60 173 25 38 11 18 14 15 181 21 16 147 95 77 t 52 44 7 19 14 3 3 7 3 207 13 3 11 19 36 40

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/9; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; sscGCCAACTGCCsss ; cor=; Ncor= a 50 40 14 22 14 4 222 190 2 11 20 3 3 17 22 58 c 64 96 165 32 193 201 10 31 227 13 32 219 216 63 93 71 g 80 66 60 173 25 38 11 18 14 15 181 21 16 147 95 77 t 52 44 7 19 14 3 3 7 3 207 13 3 11 19 36 40

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=2/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.85173; sscGCCAACTCCCss- ; cor=; Ncor= a 63 43 9 20 12 1 247 243 0 12 23 9 17 26 19 0 c 82 113 192 45 233 250 16 22 264 11 213 241 204 104 113 0 g 89 72 71 199 26 31 14 11 17 18 36 33 38 97 113 0 t 51 57 13 21 14 3 8 9 4 244 13 2 26 58 40 0

oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5_rc; m=3/9; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.839965; cssCtCAACTGCCsss ; cor=; Ncor= a 46 37 15 18 8 3 174 173 2 2 9 2 6 17 24 37 c 72 65 72 141 39 155 10 8 189 9 34 183 162 50 68 71 g 44 53 102 25 30 35 6 10 6 18 140 11 18 104 66 56 t 35 42 8 13 120 4 7 6 0 168 14 1 11 26 39 33

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=4/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.771198; -ssgCCAACTCCcss- ; cor=; Ncor= a 0 45 19 32 14 0 273 269 1 12 20 6 30 34 24 0 c 0 123 145 61 252 266 13 17 291 8 249 275 186 117 120 0 g 0 81 126 187 28 40 14 15 15 21 29 25 53 106 120 0 t 0 60 19 29 15 3 9 8 2 268 11 3 40 52 45 0

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4_rc; m=5/9; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.710751; sssaGCAACTCCcss- ; cor=; Ncor= a 57 50 14 167 22 5 349 293 1 12 18 9 39 37 25 0 c 108 147 234 80 55 321 14 25 354 6 305 327 189 149 135 0 g 118 108 111 88 269 44 5 35 15 24 39 31 80 121 171 0 t 90 68 14 38 27 3 5 20 3 331 11 6 65 66 42 0

oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=6/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.687212; rsCGCCAACTCGgcs- ; cor=; Ncor= a 65 41 10 19 2 3 227 207 0 1 10 3 22 18 14 0 c 61 104 170 21 207 217 8 15 233 10 210 60 56 133 96 0 g 77 64 56 194 28 29 11 17 14 15 22 179 136 56 117 0 t 47 41 14 16 13 1 4 11 3 224 8 8 36 43 23 0

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=7/9; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.669403; -ssgCCAACTGGss-- ; cor=; Ncor= a 0 40 24 64 9 9 307 284 1 4 11 7 40 39 0 0 c 0 132 148 79 269 259 4 26 312 7 40 61 123 161 0 0 g 0 109 134 152 32 58 10 13 12 10 267 252 102 92 0 0 t 0 47 22 33 18 2 7 5 3 307 10 8 63 36 0 0

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=8/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.641159; -ssgCCAACTCGbcs- ; cor=; Ncor= a 0 37 19 39 5 5 296 281 0 0 9 9 35 20 17 0 c 0 138 150 76 276 262 7 17 311 12 277 73 104 183 116 0 g 0 89 125 175 32 56 12 18 10 13 30 234 88 71 148 0 t 0 59 29 33 10 0 8 7 2 298 7 7 96 49 42 0

oligos_6nt_test_vs_ctrl_m3_rc_shift1 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3_rc; m=9/9; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.619679; -sscCGAACTCCcss- ; cor=; Ncor= a 0 43 35 43 9 1 367 370 3 14 7 11 49 37 32 0 c 0 175 137 267 353 47 13 17 376 8 333 329 229 171 145 0 g 0 120 197 53 34 356 8 6 24 27 54 57 63 151 179 0 t 0 67 36 42 9 1 17 12 2 356 11 8 64 46 49 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift1 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=14; shift=1; ncol=15; -ssgCCAACTCCcss ; Alignment reference a 0 45 19 32 14 0 273 269 1 12 20 6 30 34 24 c 0 123 145 61 252 266 13 17 291 8 249 275 186 117 120 g 0 81 126 187 28 40 14 15 15 21 29 25 53 106 120 t 0 60 19 29 15 3 9 8 2 268 11 3 40 52 45

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -ssgCCAACTCCcss ; cor=; Ncor= a 0 45 19 32 14 0 273 269 1 12 20 6 30 34 24 c 0 123 145 61 252 266 13 17 291 8 249 275 186 117 120 g 0 81 126 187 28 40 14 15 15 21 29 25 53 106 120 t 0 60 19 29 15 3 9 8 2 268 11 3 40 52 45

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=2/10; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.922702; sscGCCAACTCCCss ; cor=; Ncor= a 63 43 9 20 12 1 247 243 0 12 23 9 17 26 19 c 82 113 192 45 233 250 16 22 264 11 213 241 204 104 113 g 89 72 71 199 26 31 14 11 17 18 36 33 38 97 113 t 51 57 13 21 14 3 8 9 4 244 13 2 26 58 40

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=3/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.888091; -ssgCCAACTCGbcs ; cor=; Ncor= a 0 37 19 39 5 5 296 281 0 0 9 9 35 20 17 c 0 138 150 76 276 262 7 17 311 12 277 73 104 183 116 g 0 89 125 175 32 56 12 18 10 13 30 234 88 71 148 t 0 59 29 33 10 0 8 7 2 298 7 7 96 49 42

oligos_6nt_test_vs_ctrl_m3_rc_shift1 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3_rc; m=4/10; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.83311; -sscCGAACTCCcss ; cor=; Ncor= a 0 43 35 43 9 1 367 370 3 14 7 11 49 37 32 c 0 175 137 267 353 47 13 17 376 8 333 329 229 171 145 g 0 120 197 53 34 356 8 6 24 27 54 57 63 151 179 t 0 67 36 42 9 1 17 12 2 356 11 8 64 46 49

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4_rc; m=5/10; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.815666; sssaGCAACTCCcss ; cor=; Ncor= a 57 50 14 167 22 5 349 293 1 12 18 9 39 37 25 c 108 147 234 80 55 321 14 25 354 6 305 327 189 149 135 g 118 108 111 88 269 44 5 35 15 24 39 31 80 121 171 t 90 68 14 38 27 3 5 20 3 331 11 6 65 66 42

oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4; m=6/10; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.810104; rsCGCCAACTCGgcs ; cor=; Ncor= a 65 41 10 19 2 3 227 207 0 1 10 3 22 18 14 c 61 104 170 21 207 217 8 15 233 10 210 60 56 133 96 g 77 64 56 194 28 29 11 17 14 15 22 179 136 56 117 t 47 41 14 16 13 1 4 11 3 224 8 8 36 43 23

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=7/10; ncol2=16; w=-1; offset=-1; strand=D; shift=0; score=0.771198; sscGCCAACTGCCss ; cor=; Ncor= a 50 40 14 22 14 4 222 190 2 11 20 3 3 17 22 c 64 96 165 32 193 201 10 31 227 13 32 219 216 63 93 g 80 66 60 173 25 38 11 18 14 15 181 21 16 147 95 t 52 44 7 19 14 3 3 7 3 207 13 3 11 19 36

oligos_7nt_test_vs_ctrl_m3_rc_shift0 (oligos_7nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3_rc; m=8/10; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.722189; ssGCCGAACTCCCss ; cor=; Ncor= a 60 29 14 17 4 1 272 271 3 12 5 17 30 24 25 c 96 148 31 255 290 25 13 27 300 16 258 239 223 145 105 g 97 90 269 22 17 294 20 13 15 24 48 56 29 115 156 t 68 54 7 27 10 1 16 10 3 269 10 9 39 37 35

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=9/10; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.714116; -ssgCCAACTGGss- ; cor=; Ncor= a 0 40 24 64 9 9 307 284 1 4 11 7 40 39 0 c 0 132 148 79 269 259 4 26 312 7 40 61 123 161 0 g 0 109 134 152 32 58 10 13 12 10 267 252 102 92 0 t 0 47 22 33 18 2 7 5 3 307 10 8 63 36 0

oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5_rc; m=10/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.677273; cssCtCAACTGCCss ; cor=; Ncor= a 46 37 15 18 8 3 174 173 2 2 9 2 6 17 24 c 72 65 72 141 39 155 10 8 189 9 34 183 162 50 68 g 44 53 102 25 30 35 6 10 6 18 140 11 18 104 66 t 35 42 8 13 120 4 7 6 0 168 14 1 11 26 39

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift1 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=14; shift=1; ncol=15; -ssgGGAGTTCGgss ; Alignment reference a 0 49 46 64 8 11 356 2 12 17 1 9 42 36 67 c 0 179 151 63 57 54 27 24 6 8 356 34 53 197 120 g 0 145 171 229 329 333 8 376 17 13 47 353 267 137 175 t 0 32 37 49 11 7 14 3 370 367 1 9 43 35 43

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -ssgGGAGTTCGgss ; cor=; Ncor= a 0 49 46 64 8 11 356 2 12 17 1 9 42 36 67 c 0 179 151 63 57 54 27 24 6 8 356 34 53 197 120 g 0 145 171 229 329 333 8 376 17 13 47 353 267 137 175 t 0 32 37 49 11 7 14 3 370 367 1 9 43 35 43

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=2/8; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.909667; -ssGGGAGTTCGGCs ; cor=; Ncor= a 0 35 37 39 9 10 269 3 10 16 1 10 27 7 54 c 0 156 115 29 56 48 24 15 13 20 294 17 22 269 90 g 0 105 145 223 239 258 16 300 27 13 25 290 255 31 148 t 0 25 24 30 17 5 12 3 271 272 1 4 17 14 29

oligos_6nt_test_vs_ctrl_m1_rc_shift1 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1_rc; m=3/8; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.83311; -ssgGGAGTTGGcss ; cor=; Ncor= a 0 45 52 40 3 11 268 2 8 9 3 15 29 19 60 c 0 120 106 53 25 29 21 15 15 14 40 28 187 126 81 g 0 120 117 186 275 249 8 291 17 13 266 252 61 145 123 t 0 24 34 30 6 20 12 1 269 273 0 14 32 19 45

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5_rc; m=4/8; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.773392; -sgvCGAGTTGGcss ; cor=; Ncor= a 0 42 49 96 7 7 298 2 7 8 0 10 33 29 59 c 0 148 71 88 234 30 13 10 18 12 56 32 175 125 89 g 0 116 183 104 73 277 12 311 17 7 262 276 76 150 138 t 0 17 20 35 9 9 0 0 281 296 5 5 39 19 37

oligos_7nt_test_vs_ctrl_m1_rc_shift1 (oligos_7nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1_rc; m=5/8; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.743288; -ssGGGAGTTGGCgs ; cor=; Ncor= a 0 40 58 26 2 13 244 4 9 8 3 14 21 13 57 c 0 113 97 38 33 36 18 17 11 14 31 26 199 71 72 g 0 113 104 204 241 213 11 264 22 16 250 233 45 192 113 t 0 19 26 17 9 23 12 0 243 247 1 12 20 9 43

oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4; m=6/8; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.681883; -ssgGGAGTTGCtss ; cor=; Ncor= a 0 42 66 65 6 11 331 3 20 5 3 27 38 14 68 c 0 171 121 80 31 39 24 15 35 5 44 269 88 111 108 g 0 135 149 189 327 305 6 354 25 14 321 55 80 234 147 t 0 25 37 39 9 18 12 1 293 349 5 22 167 14 50

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m5; m=7/8; ncol2=16; w=-1; offset=-1; strand=D; shift=0; score=0.630112; sssGGCAGTTGaGss ; cor=; Ncor= a 33 39 26 11 1 14 168 0 6 7 4 120 13 8 42 c 56 66 104 18 11 140 18 6 10 6 35 30 25 102 53 g 71 68 50 162 183 34 9 189 8 10 155 39 141 72 65 t 37 24 17 6 2 9 2 2 173 174 3 8 18 15 37

oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2_rc; m=8/8; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.619679; sssGGCAGTTGGCgs ; cor=; Ncor= a 40 36 19 11 3 13 207 3 7 3 3 14 19 7 44 c 77 95 147 16 21 181 15 14 18 11 38 25 173 60 66 g 71 93 63 216 219 32 13 227 31 10 201 193 32 165 96 t 58 22 17 3 3 20 11 2 190 222 4 14 22 14 40

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift1 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=14; shift=1; ncol=15; -ssgCCAACTCGbcs ; Alignment reference a 0 37 19 39 5 5 296 281 0 0 9 9 35 20 17 c 0 138 150 76 276 262 7 17 311 12 277 73 104 183 116 g 0 89 125 175 32 56 12 18 10 13 30 234 88 71 148 t 0 59 29 33 10 0 8 7 2 298 7 7 96 49 42

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/9; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -ssgCCAACTCGbcs ; cor=; Ncor= a 0 37 19 39 5 5 296 281 0 0 9 9 35 20 17 c 0 138 150 76 276 262 7 17 311 12 277 73 104 183 116 g 0 89 125 175 32 56 12 18 10 13 30 234 88 71 148 t 0 59 29 33 10 0 8 7 2 298 7 7 96 49 42

oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4; m=2/9; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.906406; rsCGCCAACTCGgcs ; cor=; Ncor= a 65 41 10 19 2 3 227 207 0 1 10 3 22 18 14 c 61 104 170 21 207 217 8 15 233 10 210 60 56 133 96 g 77 64 56 194 28 29 11 17 14 15 22 179 136 56 117 t 47 41 14 16 13 1 4 11 3 224 8 8 36 43 23

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=3/9; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.888091; -ssgCCAACTCCcss ; cor=; Ncor= a 0 45 19 32 14 0 273 269 1 12 20 6 30 34 24 c 0 123 145 61 252 266 13 17 291 8 249 275 186 117 120 g 0 81 126 187 28 40 14 15 15 21 29 25 53 106 120 t 0 60 19 29 15 3 9 8 2 268 11 3 40 52 45

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1; m=4/9; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.818502; sscGCCAACTCCCss ; cor=; Ncor= a 63 43 9 20 12 1 247 243 0 12 23 9 17 26 19 c 82 113 192 45 233 250 16 22 264 11 213 241 204 104 113 g 89 72 71 199 26 31 14 11 17 18 36 33 38 97 113 t 51 57 13 21 14 3 8 9 4 244 13 2 26 58 40

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2; m=5/9; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.814328; -ssgCCAACTGGss- ; cor=; Ncor= a 0 40 24 64 9 9 307 284 1 4 11 7 40 39 0 c 0 132 148 79 269 259 4 26 312 7 40 61 123 161 0 g 0 109 134 152 32 58 10 13 12 10 267 252 102 92 0 t 0 47 22 33 18 2 7 5 3 307 10 8 63 36 0

oligos_6nt_test_vs_ctrl_m3_rc_shift1 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3_rc; m=6/9; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.773392; -sscCGAACTCCcss ; cor=; Ncor= a 0 43 35 43 9 1 367 370 3 14 7 11 49 37 32 c 0 175 137 267 353 47 13 17 376 8 333 329 229 171 145 g 0 120 197 53 34 356 8 6 24 27 54 57 63 151 179 t 0 67 36 42 9 1 17 12 2 356 11 8 64 46 49

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4_rc; m=7/9; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.724363; sssaGCAACTCCcss ; cor=; Ncor= a 57 50 14 167 22 5 349 293 1 12 18 9 39 37 25 c 108 147 234 80 55 321 14 25 354 6 305 327 189 149 135 g 118 108 111 88 269 44 5 35 15 24 39 31 80 121 171 t 90 68 14 38 27 3 5 20 3 331 11 6 65 66 42

oligos_7nt_test_vs_ctrl_m3_rc_shift0 (oligos_7nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3_rc; m=8/9; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.674287; ssGCCGAACTCCCss ; cor=; Ncor= a 60 29 14 17 4 1 272 271 3 12 5 17 30 24 25 c 96 148 31 255 290 25 13 27 300 16 258 239 223 145 105 g 97 90 269 22 17 294 20 13 15 24 48 56 29 115 156 t 68 54 7 27 10 1 16 10 3 269 10 9 39 37 35

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2; m=9/9; ncol2=16; w=-1; offset=-1; strand=D; shift=0; score=0.641159; sscGCCAACTGCCss ; cor=; Ncor= a 50 40 14 22 14 4 222 190 2 11 20 3 3 17 22 c 64 96 165 32 193 201 10 31 227 13 32 219 216 63 93 g 80 66 60 173 25 38 11 18 14 15 181 21 16 147 95 t 52 44 7 19 14 3 3 7 3 207 13 3 11 19 36

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift0 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=15; shift=0; ncol=15; rsCGCCAACTCGgcs ; Alignment reference a 65 41 10 19 2 3 227 207 0 1 10 3 22 18 14 c 61 104 170 21 207 217 8 15 233 10 210 60 56 133 96 g 77 64 56 194 28 29 11 17 14 15 22 179 136 56 117 t 47 41 14 16 13 1 4 11 3 224 8 8 36 43 23

oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/7; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; rsCGCCAACTCGgcs ; cor=; Ncor= a 65 41 10 19 2 3 227 207 0 1 10 3 22 18 14 c 61 104 170 21 207 217 8 15 233 10 210 60 56 133 96 g 77 64 56 194 28 29 11 17 14 15 22 179 136 56 117 t 47 41 14 16 13 1 4 11 3 224 8 8 36 43 23

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5; m=2/7; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.906406; -ssgCCAACTCGbcs ; cor=; Ncor= a 0 37 19 39 5 5 296 281 0 0 9 9 35 20 17 c 0 138 150 76 276 262 7 17 311 12 277 73 104 183 116 g 0 89 125 175 32 56 12 18 10 13 30 234 88 71 148 t 0 59 29 33 10 0 8 7 2 298 7 7 96 49 42

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=3/7; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.875661; sscGCCAACTCCCss ; cor=; Ncor= a 63 43 9 20 12 1 247 243 0 12 23 9 17 26 19 c 82 113 192 45 233 250 16 22 264 11 213 241 204 104 113 g 89 72 71 199 26 31 14 11 17 18 36 33 38 97 113 t 51 57 13 21 14 3 8 9 4 244 13 2 26 58 40

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=4/7; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.810104; -ssgCCAACTCCcss ; cor=; Ncor= a 0 45 19 32 14 0 273 269 1 12 20 6 30 34 24 c 0 123 145 61 252 266 13 17 291 8 249 275 186 117 120 g 0 81 126 187 28 40 14 15 15 21 29 25 53 106 120 t 0 60 19 29 15 3 9 8 2 268 11 3 40 52 45

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4_rc; m=5/7; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.756301; sssaGCAACTCCcss ; cor=; Ncor= a 57 50 14 167 22 5 349 293 1 12 18 9 39 37 25 c 108 147 234 80 55 321 14 25 354 6 305 327 189 149 135 g 118 108 111 88 269 44 5 35 15 24 39 31 80 121 171 t 90 68 14 38 27 3 5 20 3 331 11 6 65 66 42

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=6/7; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.738163; -ssgCCAACTGGss- ; cor=; Ncor= a 0 40 24 64 9 9 307 284 1 4 11 7 40 39 0 c 0 132 148 79 269 259 4 26 312 7 40 61 123 161 0 g 0 109 134 152 32 58 10 13 12 10 267 252 102 92 0 t 0 47 22 33 18 2 7 5 3 307 10 8 63 36 0

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=7/7; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.687212; sscGCCAACTGCCss ; cor=; Ncor= a 50 40 14 22 14 4 222 190 2 11 20 3 3 17 22 c 64 96 165 32 193 201 10 31 227 13 32 219 216 63 93 g 80 66 60 173 25 38 11 18 14 15 181 21 16 147 95 t 52 44 7 19 14 3 3 7 3 207 13 3 11 19 36

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=15; shift=0; ncol=15; sscGCCAACTCCCss ; Alignment reference a 63 43 9 20 12 1 247 243 0 12 23 9 17 26 19 c 82 113 192 45 233 250 16 22 264 11 213 241 204 104 113 g 89 72 71 199 26 31 14 11 17 18 36 33 38 97 113 t 51 57 13 21 14 3 8 9 4 244 13 2 26 58 40

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; sscGCCAACTCCCss ; cor=; Ncor= a 63 43 9 20 12 1 247 243 0 12 23 9 17 26 19 c 82 113 192 45 233 250 16 22 264 11 213 241 204 104 113 g 89 72 71 199 26 31 14 11 17 18 36 33 38 97 113 t 51 57 13 21 14 3 8 9 4 244 13 2 26 58 40

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=2/10; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.922702; -ssgCCAACTCCcss ; cor=; Ncor= a 0 45 19 32 14 0 273 269 1 12 20 6 30 34 24 c 0 123 145 61 252 266 13 17 291 8 249 275 186 117 120 g 0 81 126 187 28 40 14 15 15 21 29 25 53 106 120 t 0 60 19 29 15 3 9 8 2 268 11 3 40 52 45

oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4; m=3/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.875661; rsCGCCAACTCGgcs ; cor=; Ncor= a 65 41 10 19 2 3 227 207 0 1 10 3 22 18 14 c 61 104 170 21 207 217 8 15 233 10 210 60 56 133 96 g 77 64 56 194 28 29 11 17 14 15 22 179 136 56 117 t 47 41 14 16 13 1 4 11 3 224 8 8 36 43 23

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4_rc; m=4/10; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.861452; sssaGCAACTCCcss ; cor=; Ncor= a 57 50 14 167 22 5 349 293 1 12 18 9 39 37 25 c 108 147 234 80 55 321 14 25 354 6 305 327 189 149 135 g 118 108 111 88 269 44 5 35 15 24 39 31 80 121 171 t 90 68 14 38 27 3 5 20 3 331 11 6 65 66 42

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=5/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.85173; sscGCCAACTGCCss ; cor=; Ncor= a 50 40 14 22 14 4 222 190 2 11 20 3 3 17 22 c 64 96 165 32 193 201 10 31 227 13 32 219 216 63 93 g 80 66 60 173 25 38 11 18 14 15 181 21 16 147 95 t 52 44 7 19 14 3 3 7 3 207 13 3 11 19 36

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=6/10; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.818502; -ssgCCAACTCGbcs ; cor=; Ncor= a 0 37 19 39 5 5 296 281 0 0 9 9 35 20 17 c 0 138 150 76 276 262 7 17 311 12 277 73 104 183 116 g 0 89 125 175 32 56 12 18 10 13 30 234 88 71 148 t 0 59 29 33 10 0 8 7 2 298 7 7 96 49 42

oligos_6nt_test_vs_ctrl_m3_rc_shift1 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3_rc; m=7/10; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.743288; -sscCGAACTCCcss ; cor=; Ncor= a 0 43 35 43 9 1 367 370 3 14 7 11 49 37 32 c 0 175 137 267 353 47 13 17 376 8 333 329 229 171 145 g 0 120 197 53 34 356 8 6 24 27 54 57 63 151 179 t 0 67 36 42 9 1 17 12 2 356 11 8 64 46 49

oligos_7nt_test_vs_ctrl_m3_rc_shift0 (oligos_7nt_test_vs_ctrl_m3_rc)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3_rc; m=8/10; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.722896; ssGCCGAACTCCCss ; cor=; Ncor= a 60 29 14 17 4 1 272 271 3 12 5 17 30 24 25 c 96 148 31 255 290 25 13 27 300 16 258 239 223 145 105 g 97 90 269 22 17 294 20 13 15 24 48 56 29 115 156 t 68 54 7 27 10 1 16 10 3 269 10 9 39 37 35

oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5_rc; m=9/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.713271; cssCtCAACTGCCss ; cor=; Ncor= a 46 37 15 18 8 3 174 173 2 2 9 2 6 17 24 c 72 65 72 141 39 155 10 8 189 9 34 183 162 50 68 g 44 53 102 25 30 35 6 10 6 18 140 11 18 104 66 t 35 42 8 13 120 4 7 6 0 168 14 1 11 26 39

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=10/10; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.668838; -ssgCCAACTGGss- ; cor=; Ncor= a 0 40 24 64 9 9 307 284 1 4 11 7 40 39 0 c 0 132 148 79 269 259 4 26 312 7 40 61 123 161 0 g 0 109 134 152 32 58 10 13 12 10 267 252 102 92 0 t 0 47 22 33 18 2 7 5 3 307 10 8 63 36 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssgGGAGTTGCtsss ; Alignment reference a 0 42 66 65 6 11 331 3 20 5 3 27 38 14 68 90 c 0 171 121 80 31 39 24 15 35 5 44 269 88 111 108 118 g 0 135 149 189 327 305 6 354 25 14 321 55 80 234 147 108 t 0 25 37 39 9 18 12 1 293 349 5 22 167 14 50 57
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/8; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssgGGAGTTGCtsss ; cor=; Ncor= a 0 42 66 65 6 11 331 3 20 5 3 27 38 14 68 90 c 0 171 121 80 31 39 24 15 35 5 44 269 88 111 108 118 g 0 135 149 189 327 305 6 354 25 14 321 55 80 234 147 108 t 0 25 37 39 9 18 12 1 293 349 5 22 167 14 50 57
oligos_7nt_test_vs_ctrl_m1_rc_shift1 (oligos_7nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1_rc; m=2/8; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.861452; -ssGGGAGTTGGCgss ; cor=; Ncor= a 0 40 58 26 2 13 244 4 9 8 3 14 21 13 57 51 c 0 113 97 38 33 36 18 17 11 14 31 26 199 71 72 89 g 0 113 104 204 241 213 11 264 22 16 250 233 45 192 113 82 t 0 19 26 17 9 23 12 0 243 247 1 12 20 9 43 63
oligos_6nt_test_vs_ctrl_m1_rc_shift1 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1_rc; m=3/8; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.815666; -ssgGGAGTTGGcss- ; cor=; Ncor= a 0 45 52 40 3 11 268 2 8 9 3 15 29 19 60 0 c 0 120 106 53 25 29 21 15 15 14 40 28 187 126 81 0 g 0 120 117 186 275 249 8 291 17 13 266 252 61 145 123 0 t 0 24 34 30 6 20 12 1 269 273 0 14 32 19 45 0
oligos_7nt_test_vs_ctrl_m4_rc_shift1 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4_rc; m=4/8; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.756301; -sgcCGAGTTGGCGsy ; cor=; Ncor= a 0 23 43 36 8 8 224 3 11 4 1 13 16 14 41 47 c 0 117 56 136 179 22 15 14 17 11 29 28 194 56 64 77 g 0 96 133 56 60 210 10 233 15 8 217 207 21 170 104 61 t 0 14 18 22 3 10 1 0 207 227 3 2 19 10 41 65
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5_rc; m=5/8; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.724363; -sgvCGAGTTGGcss- ; cor=; Ncor= a 0 42 49 96 7 7 298 2 7 8 0 10 33 29 59 0 c 0 148 71 88 234 30 13 10 18 12 56 32 175 125 89 0 g 0 116 183 104 73 277 12 311 17 7 262 276 76 150 138 0 t 0 17 20 35 9 9 0 0 281 296 5 5 39 19 37 0
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5; m=6/8; ncol2=16; w=-1; offset=-1; strand=D; shift=0; score=0.717561; sssGGCAGTTGaGssg ; cor=; Ncor= a 33 39 26 11 1 14 168 0 6 7 4 120 13 8 42 35 c 56 66 104 18 11 140 18 6 10 6 35 30 25 102 53 44 g 71 68 50 162 183 34 9 189 8 10 155 39 141 72 65 72 t 37 24 17 6 2 9 2 2 173 174 3 8 18 15 37 46
oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2_rc; m=7/8; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.710751; sssGGCAGTTGGCgss ; cor=; Ncor= a 40 36 19 11 3 13 207 3 7 3 3 14 19 7 44 52 c 77 95 147 16 21 181 15 14 18 11 38 25 173 60 66 80 g 71 93 63 216 219 32 13 227 31 10 201 193 32 165 96 64 t 58 22 17 3 3 20 11 2 190 222 4 14 22 14 40 50
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3; m=8/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.681883; -ssgGGAGTTCGgss- ; cor=; Ncor= a 0 49 46 64 8 11 356 2 12 17 1 9 42 36 67 0 c 0 179 151 63 57 54 27 24 6 8 356 34 53 197 120 0 g 0 145 171 229 329 333 8 376 17 13 47 353 267 137 175 0 t 0 32 37 49 11 7 14 3 370 367 1 9 43 35 43 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=13; shift=1; ncol=14; -ssgCCAACTGGss ; Alignment reference a 0 40 24 64 9 9 307 284 1 4 11 7 40 39 c 0 132 148 79 269 259 4 26 312 7 40 61 123 161 g 0 109 134 152 32 58 10 13 12 10 267 252 102 92 t 0 47 22 33 18 2 7 5 3 307 10 8 63 36
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/7; ncol2=13; w=0; offset=0; strand=D; shift=1; score= 1; -ssgCCAACTGGss ; cor=; Ncor= a 0 40 24 64 9 9 307 284 1 4 11 7 40 39 c 0 132 148 79 269 259 4 26 312 7 40 61 123 161 g 0 109 134 152 32 58 10 13 12 10 267 252 102 92 t 0 47 22 33 18 2 7 5 3 307 10 8 63 36
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=2/7; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.814328; -ssgCCAACTCGbc ; cor=; Ncor= a 0 37 19 39 5 5 296 281 0 0 9 9 35 20 c 0 138 150 76 276 262 7 17 311 12 277 73 104 183 g 0 89 125 175 32 56 12 18 10 13 30 234 88 71 t 0 59 29 33 10 0 8 7 2 298 7 7 96 49
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=3/7; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.738163; rsCGCCAACTCGgc ; cor=; Ncor= a 65 41 10 19 2 3 227 207 0 1 10 3 22 18 c 61 104 170 21 207 217 8 15 233 10 210 60 56 133 g 77 64 56 194 28 29 11 17 14 15 22 179 136 56 t 47 41 14 16 13 1 4 11 3 224 8 8 36 43
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=4/7; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.714116; -ssgCCAACTCCcs ; cor=; Ncor= a 0 45 19 32 14 0 273 269 1 12 20 6 30 34 c 0 123 145 61 252 266 13 17 291 8 249 275 186 117 g 0 81 126 187 28 40 14 15 15 21 29 25 53 106 t 0 60 19 29 15 3 9 8 2 268 11 3 40 52
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=5/7; ncol2=16; w=-1; offset=-1; strand=D; shift=0; score=0.669403; sscGCCAACTGCCs ; cor=; Ncor= a 50 40 14 22 14 4 222 190 2 11 20 3 3 17 c 64 96 165 32 193 201 10 31 227 13 32 219 216 63 g 80 66 60 173 25 38 11 18 14 15 181 21 16 147 t 52 44 7 19 14 3 3 7 3 207 13 3 11 19
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=6/7; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.668838; sscGCCAACTCCCs ; cor=; Ncor= a 63 43 9 20 12 1 247 243 0 12 23 9 17 26 c 82 113 192 45 233 250 16 22 264 11 213 241 204 104 g 89 72 71 199 26 31 14 11 17 18 36 33 38 97 t 51 57 13 21 14 3 8 9 4 244 13 2 26 58
oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5_rc; m=7/7; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.585259; cssCtCAACTGCCs ; cor=; Ncor= a 46 37 15 18 8 3 174 173 2 2 9 2 6 17 c 72 65 72 141 39 155 10 8 189 9 34 183 162 50 g 44 53 102 25 30 35 6 10 6 18 140 11 18 104 t 35 42 8 13 120 4 7 6 0 168 14 1 11 26

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssGGGAGTTCGGCss ; Alignment reference a 0 35 37 39 9 10 269 3 10 16 1 10 27 7 54 68 c 0 156 115 29 56 48 24 15 13 20 294 17 22 269 90 97 g 0 105 145 223 239 258 16 300 27 13 25 290 255 31 148 96 t 0 25 24 30 17 5 12 3 271 272 1 4 17 14 29 60
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/6; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssGGGAGTTCGGCss ; cor=; Ncor= a 0 35 37 39 9 10 269 3 10 16 1 10 27 7 54 68 c 0 156 115 29 56 48 24 15 13 20 294 17 22 269 90 97 g 0 105 145 223 239 258 16 300 27 13 25 290 255 31 148 96 t 0 25 24 30 17 5 12 3 271 272 1 4 17 14 29 60
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=2/6; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.909667; -ssgGGAGTTCGgss- ; cor=; Ncor= a 0 49 46 64 8 11 356 2 12 17 1 9 42 36 67 0 c 0 179 151 63 57 54 27 24 6 8 356 34 53 197 120 0 g 0 145 171 229 329 333 8 376 17 13 47 353 267 137 175 0 t 0 32 37 49 11 7 14 3 370 367 1 9 43 35 43 0
oligos_7nt_test_vs_ctrl_m1_rc_shift1 (oligos_7nt_test_vs_ctrl_m1_rc)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1_rc; m=3/6; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.722896; -ssGGGAGTTGGCgss ; cor=; Ncor= a 0 40 58 26 2 13 244 4 9 8 3 14 21 13 57 51 c 0 113 97 38 33 36 18 17 11 14 31 26 199 71 72 89 g 0 113 104 204 241 213 11 264 22 16 250 233 45 192 113 82 t 0 19 26 17 9 23 12 0 243 247 1 12 20 9 43 63
oligos_6nt_test_vs_ctrl_m1_rc_shift1 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1_rc; m=4/6; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.722189; -ssgGGAGTTGGcss- ; cor=; Ncor= a 0 45 52 40 3 11 268 2 8 9 3 15 29 19 60 0 c 0 120 106 53 25 29 21 15 15 14 40 28 187 126 81 0 g 0 120 117 186 275 249 8 291 17 13 266 252 61 145 123 0 t 0 24 34 30 6 20 12 1 269 273 0 14 32 19 45 0
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5_rc; m=5/6; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.674287; -sgvCGAGTTGGcss- ; cor=; Ncor= a 0 42 49 96 7 7 298 2 7 8 0 10 33 29 59 0 c 0 148 71 88 234 30 13 10 18 12 56 32 175 125 89 0 g 0 116 183 104 73 277 12 311 17 7 262 276 76 150 138 0 t 0 17 20 35 9 9 0 0 281 296 5 5 39 19 37 0
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m5; m=6/6; ncol2=16; w=-1; offset=-1; strand=D; shift=0; score=0.660215; sssGGCAGTTGaGssg ; cor=; Ncor= a 33 39 26 11 1 14 168 0 6 7 4 120 13 8 42 35 c 56 66 104 18 11 140 18 6 10 6 35 30 25 102 53 44 g 71 68 50 162 183 34 9 189 8 10 155 39 141 72 65 72 t 37 24 17 6 2 9 2 2 173 174 3 8 18 15 37 46

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=16; shift=0; ncol=16; sssGGCAGTTGaGssg ; Alignment reference a 33 39 26 11 1 14 168 0 6 7 4 120 13 8 42 35 c 56 66 104 18 11 140 18 6 10 6 35 30 25 102 53 44 g 71 68 50 162 183 34 9 189 8 10 155 39 141 72 65 72 t 37 24 17 6 2 9 2 2 173 174 3 8 18 15 37 46
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/8; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; sssGGCAGTTGaGssg ; cor=; Ncor= a 33 39 26 11 1 14 168 0 6 7 4 120 13 8 42 35 c 56 66 104 18 11 140 18 6 10 6 35 30 25 102 53 44 g 71 68 50 162 183 34 9 189 8 10 155 39 141 72 65 72 t 37 24 17 6 2 9 2 2 173 174 3 8 18 15 37 46
oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2_rc; m=2/8; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.839965; sssGGCAGTTGGCgss ; cor=; Ncor= a 40 36 19 11 3 13 207 3 7 3 3 14 19 7 44 52 c 77 95 147 16 21 181 15 14 18 11 38 25 173 60 66 80 g 71 93 63 216 219 32 13 227 31 10 201 193 32 165 96 64 t 58 22 17 3 3 20 11 2 190 222 4 14 22 14 40 50
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4; m=3/8; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.717561; -ssgGGAGTTGCtsss ; cor=; Ncor= a 0 42 66 65 6 11 331 3 20 5 3 27 38 14 68 90 c 0 171 121 80 31 39 24 15 35 5 44 269 88 111 108 118 g 0 135 149 189 327 305 6 354 25 14 321 55 80 234 147 108 t 0 25 37 39 9 18 12 1 293 349 5 22 167 14 50 57
oligos_7nt_test_vs_ctrl_m1_rc_shift1 (oligos_7nt_test_vs_ctrl_m1_rc)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1_rc; m=4/8; ncol2=15; w=0; offset=1; strand=R; shift=1; score=0.713271; -ssGGGAGTTGGCgss ; cor=; Ncor= a 0 40 58 26 2 13 244 4 9 8 3 14 21 13 57 51 c 0 113 97 38 33 36 18 17 11 14 31 26 199 71 72 89 g 0 113 104 204 241 213 11 264 22 16 250 233 45 192 113 82 t 0 19 26 17 9 23 12 0 243 247 1 12 20 9 43 63
oligos_6nt_test_vs_ctrl_m1_rc_shift1 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1_rc; m=5/8; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.677273; -ssgGGAGTTGGcss- ; cor=; Ncor= a 0 45 52 40 3 11 268 2 8 9 3 15 29 19 60 0 c 0 120 106 53 25 29 21 15 15 14 40 28 187 126 81 0 g 0 120 117 186 275 249 8 291 17 13 266 252 61 145 123 0 t 0 24 34 30 6 20 12 1 269 273 0 14 32 19 45 0
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3; m=6/8; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.660215; -ssGGGAGTTCGGCss ; cor=; Ncor= a 0 35 37 39 9 10 269 3 10 16 1 10 27 7 54 68 c 0 156 115 29 56 48 24 15 13 20 294 17 22 269 90 97 g 0 105 145 223 239 258 16 300 27 13 25 290 255 31 148 96 t 0 25 24 30 17 5 12 3 271 272 1 4 17 14 29 60
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3; m=7/8; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.630112; -ssgGGAGTTCGgss- ; cor=; Ncor= a 0 49 46 64 8 11 356 2 12 17 1 9 42 36 67 0 c 0 179 151 63 57 54 27 24 6 8 356 34 53 197 120 0 g 0 145 171 229 329 333 8 376 17 13 47 353 267 137 175 0 t 0 32 37 49 11 7 14 3 370 367 1 9 43 35 43 0
oligos_6nt_test_vs_ctrl_m2_rc_shift2 (oligos_6nt_test_vs_ctrl_m2_rc)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2_rc; m=8/8; ncol2=13; w=0; offset=2; strand=R; shift=2; score=0.585259; --ssCCAGTTGGcss- ; cor=; Ncor= a 0 0 36 63 8 10 307 3 5 7 2 18 33 22 47 0 c 0 0 92 102 252 267 10 12 13 10 58 32 152 134 109 0 g 0 0 161 123 61 40 7 312 26 4 259 269 79 148 132 0 t 0 0 39 40 7 11 4 1 284 307 9 9 64 24 40 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=16; shift=0; ncol=16; sscGCCAACTGCCsss ; Alignment reference a 50 40 14 22 14 4 222 190 2 11 20 3 3 17 22 58 c 64 96 165 32 193 201 10 31 227 13 32 219 216 63 93 71 g 80 66 60 173 25 38 11 18 14 15 181 21 16 147 95 77 t 52 44 7 19 14 3 3 7 3 207 13 3 11 19 36 40
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/9; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; sscGCCAACTGCCsss ; cor=; Ncor= a 50 40 14 22 14 4 222 190 2 11 20 3 3 17 22 58 c 64 96 165 32 193 201 10 31 227 13 32 219 216 63 93 71 g 80 66 60 173 25 38 11 18 14 15 181 21 16 147 95 77 t 52 44 7 19 14 3 3 7 3 207 13 3 11 19 36 40
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=2/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.85173; sscGCCAACTCCCss- ; cor=; Ncor= a 63 43 9 20 12 1 247 243 0 12 23 9 17 26 19 0 c 82 113 192 45 233 250 16 22 264 11 213 241 204 104 113 0 g 89 72 71 199 26 31 14 11 17 18 36 33 38 97 113 0 t 51 57 13 21 14 3 8 9 4 244 13 2 26 58 40 0
oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5_rc; m=3/9; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.839965; cssCtCAACTGCCsss ; cor=; Ncor= a 46 37 15 18 8 3 174 173 2 2 9 2 6 17 24 37 c 72 65 72 141 39 155 10 8 189 9 34 183 162 50 68 71 g 44 53 102 25 30 35 6 10 6 18 140 11 18 104 66 56 t 35 42 8 13 120 4 7 6 0 168 14 1 11 26 39 33
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=4/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.771198; -ssgCCAACTCCcss- ; cor=; Ncor= a 0 45 19 32 14 0 273 269 1 12 20 6 30 34 24 0 c 0 123 145 61 252 266 13 17 291 8 249 275 186 117 120 0 g 0 81 126 187 28 40 14 15 15 21 29 25 53 106 120 0 t 0 60 19 29 15 3 9 8 2 268 11 3 40 52 45 0
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4_rc; m=5/9; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.710751; sssaGCAACTCCcss- ; cor=; Ncor= a 57 50 14 167 22 5 349 293 1 12 18 9 39 37 25 0 c 108 147 234 80 55 321 14 25 354 6 305 327 189 149 135 0 g 118 108 111 88 269 44 5 35 15 24 39 31 80 121 171 0 t 90 68 14 38 27 3 5 20 3 331 11 6 65 66 42 0
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=6/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.687212; rsCGCCAACTCGgcs- ; cor=; Ncor= a 65 41 10 19 2 3 227 207 0 1 10 3 22 18 14 0 c 61 104 170 21 207 217 8 15 233 10 210 60 56 133 96 0 g 77 64 56 194 28 29 11 17 14 15 22 179 136 56 117 0 t 47 41 14 16 13 1 4 11 3 224 8 8 36 43 23 0
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=7/9; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.669403; -ssgCCAACTGGss-- ; cor=; Ncor= a 0 40 24 64 9 9 307 284 1 4 11 7 40 39 0 0 c 0 132 148 79 269 259 4 26 312 7 40 61 123 161 0 0 g 0 109 134 152 32 58 10 13 12 10 267 252 102 92 0 0 t 0 47 22 33 18 2 7 5 3 307 10 8 63 36 0 0
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=8/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.641159; -ssgCCAACTCGbcs- ; cor=; Ncor= a 0 37 19 39 5 5 296 281 0 0 9 9 35 20 17 0 c 0 138 150 76 276 262 7 17 311 12 277 73 104 183 116 0 g 0 89 125 175 32 56 12 18 10 13 30 234 88 71 148 0 t 0 59 29 33 10 0 8 7 2 298 7 7 96 49 42 0
oligos_6nt_test_vs_ctrl_m3_rc_shift1 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3_rc; m=9/9; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.619679; -sscCGAACTCCcss- ; cor=; Ncor= a 0 43 35 43 9 1 367 370 3 14 7 11 49 37 32 0 c 0 175 137 267 353 47 13 17 376 8 333 329 229 171 145 0 g 0 120 197 53 34 356 8 6 24 27 54 57 63 151 179 0 t 0 67 36 42 9 1 17 12 2 356 11 8 64 46 49 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=14; shift=1; ncol=15; -ssgCCAACTCCcss ; Alignment reference a 0 45 19 32 14 0 273 269 1 12 20 6 30 34 24 c 0 123 145 61 252 266 13 17 291 8 249 275 186 117 120 g 0 81 126 187 28 40 14 15 15 21 29 25 53 106 120 t 0 60 19 29 15 3 9 8 2 268 11 3 40 52 45
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -ssgCCAACTCCcss ; cor=; Ncor= a 0 45 19 32 14 0 273 269 1 12 20 6 30 34 24 c 0 123 145 61 252 266 13 17 291 8 249 275 186 117 120 g 0 81 126 187 28 40 14 15 15 21 29 25 53 106 120 t 0 60 19 29 15 3 9 8 2 268 11 3 40 52 45
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=2/10; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.922702; sscGCCAACTCCCss ; cor=; Ncor= a 63 43 9 20 12 1 247 243 0 12 23 9 17 26 19 c 82 113 192 45 233 250 16 22 264 11 213 241 204 104 113 g 89 72 71 199 26 31 14 11 17 18 36 33 38 97 113 t 51 57 13 21 14 3 8 9 4 244 13 2 26 58 40
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=3/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.888091; -ssgCCAACTCGbcs ; cor=; Ncor= a 0 37 19 39 5 5 296 281 0 0 9 9 35 20 17 c 0 138 150 76 276 262 7 17 311 12 277 73 104 183 116 g 0 89 125 175 32 56 12 18 10 13 30 234 88 71 148 t 0 59 29 33 10 0 8 7 2 298 7 7 96 49 42
oligos_6nt_test_vs_ctrl_m3_rc_shift1 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3_rc; m=4/10; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.83311; -sscCGAACTCCcss ; cor=; Ncor= a 0 43 35 43 9 1 367 370 3 14 7 11 49 37 32 c 0 175 137 267 353 47 13 17 376 8 333 329 229 171 145 g 0 120 197 53 34 356 8 6 24 27 54 57 63 151 179 t 0 67 36 42 9 1 17 12 2 356 11 8 64 46 49
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4_rc; m=5/10; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.815666; sssaGCAACTCCcss ; cor=; Ncor= a 57 50 14 167 22 5 349 293 1 12 18 9 39 37 25 c 108 147 234 80 55 321 14 25 354 6 305 327 189 149 135 g 118 108 111 88 269 44 5 35 15 24 39 31 80 121 171 t 90 68 14 38 27 3 5 20 3 331 11 6 65 66 42
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4; m=6/10; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.810104; rsCGCCAACTCGgcs ; cor=; Ncor= a 65 41 10 19 2 3 227 207 0 1 10 3 22 18 14 c 61 104 170 21 207 217 8 15 233 10 210 60 56 133 96 g 77 64 56 194 28 29 11 17 14 15 22 179 136 56 117 t 47 41 14 16 13 1 4 11 3 224 8 8 36 43 23
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=7/10; ncol2=16; w=-1; offset=-1; strand=D; shift=0; score=0.771198; sscGCCAACTGCCss ; cor=; Ncor= a 50 40 14 22 14 4 222 190 2 11 20 3 3 17 22 c 64 96 165 32 193 201 10 31 227 13 32 219 216 63 93 g 80 66 60 173 25 38 11 18 14 15 181 21 16 147 95 t 52 44 7 19 14 3 3 7 3 207 13 3 11 19 36
oligos_7nt_test_vs_ctrl_m3_rc_shift0 (oligos_7nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3_rc; m=8/10; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.722189; ssGCCGAACTCCCss ; cor=; Ncor= a 60 29 14 17 4 1 272 271 3 12 5 17 30 24 25 c 96 148 31 255 290 25 13 27 300 16 258 239 223 145 105 g 97 90 269 22 17 294 20 13 15 24 48 56 29 115 156 t 68 54 7 27 10 1 16 10 3 269 10 9 39 37 35
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=9/10; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.714116; -ssgCCAACTGGss- ; cor=; Ncor= a 0 40 24 64 9 9 307 284 1 4 11 7 40 39 0 c 0 132 148 79 269 259 4 26 312 7 40 61 123 161 0 g 0 109 134 152 32 58 10 13 12 10 267 252 102 92 0 t 0 47 22 33 18 2 7 5 3 307 10 8 63 36 0
oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5_rc; m=10/10; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.677273; cssCtCAACTGCCss ; cor=; Ncor= a 46 37 15 18 8 3 174 173 2 2 9 2 6 17 24 c 72 65 72 141 39 155 10 8 189 9 34 183 162 50 68 g 44 53 102 25 30 35 6 10 6 18 140 11 18 104 66 t 35 42 8 13 120 4 7 6 0 168 14 1 11 26 39

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=14; shift=1; ncol=15; -ssgGGAGTTCGgss ; Alignment reference a 0 49 46 64 8 11 356 2 12 17 1 9 42 36 67 c 0 179 151 63 57 54 27 24 6 8 356 34 53 197 120 g 0 145 171 229 329 333 8 376 17 13 47 353 267 137 175 t 0 32 37 49 11 7 14 3 370 367 1 9 43 35 43
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -ssgGGAGTTCGgss ; cor=; Ncor= a 0 49 46 64 8 11 356 2 12 17 1 9 42 36 67 c 0 179 151 63 57 54 27 24 6 8 356 34 53 197 120 g 0 145 171 229 329 333 8 376 17 13 47 353 267 137 175 t 0 32 37 49 11 7 14 3 370 367 1 9 43 35 43
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=2/8; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.909667; -ssGGGAGTTCGGCs ; cor=; Ncor= a 0 35 37 39 9 10 269 3 10 16 1 10 27 7 54 c 0 156 115 29 56 48 24 15 13 20 294 17 22 269 90 g 0 105 145 223 239 258 16 300 27 13 25 290 255 31 148 t 0 25 24 30 17 5 12 3 271 272 1 4 17 14 29
oligos_6nt_test_vs_ctrl_m1_rc_shift1 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1_rc; m=3/8; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.83311; -ssgGGAGTTGGcss ; cor=; Ncor= a 0 45 52 40 3 11 268 2 8 9 3 15 29 19 60 c 0 120 106 53 25 29 21 15 15 14 40 28 187 126 81 g 0 120 117 186 275 249 8 291 17 13 266 252 61 145 123 t 0 24 34 30 6 20 12 1 269 273 0 14 32 19 45
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5_rc; m=4/8; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.773392; -sgvCGAGTTGGcss ; cor=; Ncor= a 0 42 49 96 7 7 298 2 7 8 0 10 33 29 59 c 0 148 71 88 234 30 13 10 18 12 56 32 175 125 89 g 0 116 183 104 73 277 12 311 17 7 262 276 76 150 138 t 0 17 20 35 9 9 0 0 281 296 5 5 39 19 37
oligos_7nt_test_vs_ctrl_m1_rc_shift1 (oligos_7nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1_rc; m=5/8; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.743288; -ssGGGAGTTGGCgs ; cor=; Ncor= a 0 40 58 26 2 13 244 4 9 8 3 14 21 13 57 c 0 113 97 38 33 36 18 17 11 14 31 26 199 71 72 g 0 113 104 204 241 213 11 264 22 16 250 233 45 192 113 t 0 19 26 17 9 23 12 0 243 247 1 12 20 9 43
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4; m=6/8; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.681883; -ssgGGAGTTGCtss ; cor=; Ncor= a 0 42 66 65 6 11 331 3 20 5 3 27 38 14 68 c 0 171 121 80 31 39 24 15 35 5 44 269 88 111 108 g 0 135 149 189 327 305 6 354 25 14 321 55 80 234 147 t 0 25 37 39 9 18 12 1 293 349 5 22 167 14 50
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m5; m=7/8; ncol2=16; w=-1; offset=-1; strand=D; shift=0; score=0.630112; sssGGCAGTTGaGss ; cor=; Ncor= a 33 39 26 11 1 14 168 0 6 7 4 120 13 8 42 c 56 66 104 18 11 140 18 6 10 6 35 30 25 102 53 g 71 68 50 162 183 34 9 189 8 10 155 39 141 72 65 t 37 24 17 6 2 9 2 2 173 174 3 8 18 15 37
oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2_rc; m=8/8; ncol2=16; w=-1; offset=-1; strand=R; shift=0; score=0.619679; sssGGCAGTTGGCgs ; cor=; Ncor= a 40 36 19 11 3 13 207 3 7 3 3 14 19 7 44 c 77 95 147 16 21 181 15 14 18 11 38 25 173 60 66 g 71 93 63 216 219 32 13 227 31 10 201 193 32 165 96 t 58 22 17 3 3 20 11 2 190 222 4 14 22 14 40

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=14; shift=1; ncol=15; -ssgCCAACTCGbcs ; Alignment reference a 0 37 19 39 5 5 296 281 0 0 9 9 35 20 17 c 0 138 150 76 276 262 7 17 311 12 277 73 104 183 116 g 0 89 125 175 32 56 12 18 10 13 30 234 88 71 148 t 0 59 29 33 10 0 8 7 2 298 7 7 96 49 42
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/9; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -ssgCCAACTCGbcs ; cor=; Ncor= a 0 37 19 39 5 5 296 281 0 0 9 9 35 20 17 c 0 138 150 76 276 262 7 17 311 12 277 73 104 183 116 g 0 89 125 175 32 56 12 18 10 13 30 234 88 71 148 t 0 59 29 33 10 0 8 7 2 298 7 7 96 49 42
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4; m=2/9; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.906406; rsCGCCAACTCGgcs ; cor=; Ncor= a 65 41 10 19 2 3 227 207 0 1 10 3 22 18 14 c 61 104 170 21 207 217 8 15 233 10 210 60 56 133 96 g 77 64 56 194 28 29 11 17 14 15 22 179 136 56 117 t 47 41 14 16 13 1 4 11 3 224 8 8 36 43 23
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=3/9; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.888091; -ssgCCAACTCCcss ; cor=; Ncor= a 0 45 19 32 14 0 273 269 1 12 20 6 30 34 24 c 0 123 145 61 252 266 13 17 291 8 249 275 186 117 120 g 0 81 126 187 28 40 14 15 15 21 29 25 53 106 120 t 0 60 19 29 15 3 9 8 2 268 11 3 40 52 45
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1; m=4/9; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.818502; sscGCCAACTCCCss ; cor=; Ncor= a 63 43 9 20 12 1 247 243 0 12 23 9 17 26 19 c 82 113 192 45 233 250 16 22 264 11 213 241 204 104 113 g 89 72 71 199 26 31 14 11 17 18 36 33 38 97 113 t 51 57 13 21 14 3 8 9 4 244 13 2 26 58 40
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2; m=5/9; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.814328; -ssgCCAACTGGss- ; cor=; Ncor= a 0 40 24 64 9 9 307 284 1 4 11 7 40 39 0 c 0 132 148 79 269 259 4 26 312 7 40 61 123 161 0 g 0 109 134 152 32 58 10 13 12 10 267 252 102 92 0 t 0 47 22 33 18 2 7 5 3 307 10 8 63 36 0
oligos_6nt_test_vs_ctrl_m3_rc_shift1 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3_rc; m=6/9; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.773392; -sscCGAACTCCcss ; cor=; Ncor= a 0 43 35 43 9 1 367 370 3 14 7 11 49 37 32 c 0 175 137 267 353 47 13 17 376 8 333 329 229 171 145 g 0 120 197 53 34 356 8 6 24 27 54 57 63 151 179 t 0 67 36 42 9 1 17 12 2 356 11 8 64 46 49
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4_rc; m=7/9; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.724363; sssaGCAACTCCcss ; cor=; Ncor= a 57 50 14 167 22 5 349 293 1 12 18 9 39 37 25 c 108 147 234 80 55 321 14 25 354 6 305 327 189 149 135 g 118 108 111 88 269 44 5 35 15 24 39 31 80 121 171 t 90 68 14 38 27 3 5 20 3 331 11 6 65 66 42
oligos_7nt_test_vs_ctrl_m3_rc_shift0 (oligos_7nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3_rc; m=8/9; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.674287; ssGCCGAACTCCCss ; cor=; Ncor= a 60 29 14 17 4 1 272 271 3 12 5 17 30 24 25 c 96 148 31 255 290 25 13 27 300 16 258 239 223 145 105 g 97 90 269 22 17 294 20 13 15 24 48 56 29 115 156 t 68 54 7 27 10 1 16 10 3 269 10 9 39 37 35
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2; m=9/9; ncol2=16; w=-1; offset=-1; strand=D; shift=0; score=0.641159; sscGCCAACTGCCss ; cor=; Ncor= a 50 40 14 22 14 4 222 190 2 11 20 3 3 17 22 c 64 96 165 32 193 201 10 31 227 13 32 219 216 63 93 g 80 66 60 173 25 38 11 18 14 15 181 21 16 147 95 t 52 44 7 19 14 3 3 7 3 207 13 3 11 19 36

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=15; shift=0; ncol=15; rsCGCCAACTCGgcs ; Alignment reference a 65 41 10 19 2 3 227 207 0 1 10 3 22 18 14 c 61 104 170 21 207 217 8 15 233 10 210 60 56 133 96 g 77 64 56 194 28 29 11 17 14 15 22 179 136 56 117 t 47 41 14 16 13 1 4 11 3 224 8 8 36 43 23
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/7; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; rsCGCCAACTCGgcs ; cor=; Ncor= a 65 41 10 19 2 3 227 207 0 1 10 3 22 18 14 c 61 104 170 21 207 217 8 15 233 10 210 60 56 133 96 g 77 64 56 194 28 29 11 17 14 15 22 179 136 56 117 t 47 41 14 16 13 1 4 11 3 224 8 8 36 43 23
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5; m=2/7; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.906406; -ssgCCAACTCGbcs ; cor=; Ncor= a 0 37 19 39 5 5 296 281 0 0 9 9 35 20 17 c 0 138 150 76 276 262 7 17 311 12 277 73 104 183 116 g 0 89 125 175 32 56 12 18 10 13 30 234 88 71 148 t 0 59 29 33 10 0 8 7 2 298 7 7 96 49 42
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=3/7; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.875661; sscGCCAACTCCCss ; cor=; Ncor= a 63 43 9 20 12 1 247 243 0 12 23 9 17 26 19 c 82 113 192 45 233 250 16 22 264 11 213 241 204 104 113 g 89 72 71 199 26 31 14 11 17 18 36 33 38 97 113 t 51 57 13 21 14 3 8 9 4 244 13 2 26 58 40
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=4/7; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.810104; -ssgCCAACTCCcss ; cor=; Ncor= a 0 45 19 32 14 0 273 269 1 12 20 6 30 34 24 c 0 123 145 61 252 266 13 17 291 8 249 275 186 117 120 g 0 81 126 187 28 40 14 15 15 21 29 25 53 106 120 t 0 60 19 29 15 3 9 8 2 268 11 3 40 52 45
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4_rc; m=5/7; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.756301; sssaGCAACTCCcss ; cor=; Ncor= a 57 50 14 167 22 5 349 293 1 12 18 9 39 37 25 c 108 147 234 80 55 321 14 25 354 6 305 327 189 149 135 g 118 108 111 88 269 44 5 35 15 24 39 31 80 121 171 t 90 68 14 38 27 3 5 20 3 331 11 6 65 66 42
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=6/7; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.738163; -ssgCCAACTGGss- ; cor=; Ncor= a 0 40 24 64 9 9 307 284 1 4 11 7 40 39 0 c 0 132 148 79 269 259 4 26 312 7 40 61 123 161 0 g 0 109 134 152 32 58 10 13 12 10 267 252 102 92 0 t 0 47 22 33 18 2 7 5 3 307 10 8 63 36 0
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=7/7; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.687212; sscGCCAACTGCCss ; cor=; Ncor= a 50 40 14 22 14 4 222 190 2 11 20 3 3 17 22 c 64 96 165 32 193 201 10 31 227 13 32 219 216 63 93 g 80 66 60 173 25 38 11 18 14 15 181 21 16 147 95 t 52 44 7 19 14 3 3 7 3 207 13 3 11 19 36

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=15; shift=0; ncol=15; sscGCCAACTCCCss ; Alignment reference a 63 43 9 20 12 1 247 243 0 12 23 9 17 26 19 c 82 113 192 45 233 250 16 22 264 11 213 241 204 104 113 g 89 72 71 199 26 31 14 11 17 18 36 33 38 97 113 t 51 57 13 21 14 3 8 9 4 244 13 2 26 58 40
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; sscGCCAACTCCCss ; cor=; Ncor= a 63 43 9 20 12 1 247 243 0 12 23 9 17 26 19 c 82 113 192 45 233 250 16 22 264 11 213 241 204 104 113 g 89 72 71 199 26 31 14 11 17 18 36 33 38 97 113 t 51 57 13 21 14 3 8 9 4 244 13 2 26 58 40
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=2/10; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.922702; -ssgCCAACTCCcss ; cor=; Ncor= a 0 45 19 32 14 0 273 269 1 12 20 6 30 34 24 c 0 123 145 61 252 266 13 17 291 8 249 275 186 117 120 g 0 81 126 187 28 40 14 15 15 21 29 25 53 106 120 t 0 60 19 29 15 3 9 8 2 268 11 3 40 52 45
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4; m=3/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.875661; rsCGCCAACTCGgcs ; cor=; Ncor= a 65 41 10 19 2 3 227 207 0 1 10 3 22 18 14 c 61 104 170 21 207 217 8 15 233 10 210 60 56 133 96 g 77 64 56 194 28 29 11 17 14 15 22 179 136 56 117 t 47 41 14 16 13 1 4 11 3 224 8 8 36 43 23
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4_rc; m=4/10; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.861452; sssaGCAACTCCcss ; cor=; Ncor= a 57 50 14 167 22 5 349 293 1 12 18 9 39 37 25 c 108 147 234 80 55 321 14 25 354 6 305 327 189 149 135 g 118 108 111 88 269 44 5 35 15 24 39 31 80 121 171 t 90 68 14 38 27 3 5 20 3 331 11 6 65 66 42
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=5/10; ncol2=16; w=0; offset=0; strand=D; shift=0; score=0.85173; sscGCCAACTGCCss ; cor=; Ncor= a 50 40 14 22 14 4 222 190 2 11 20 3 3 17 22 c 64 96 165 32 193 201 10 31 227 13 32 219 216 63 93 g 80 66 60 173 25 38 11 18 14 15 181 21 16 147 95 t 52 44 7 19 14 3 3 7 3 207 13 3 11 19 36
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=6/10; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.818502; -ssgCCAACTCGbcs ; cor=; Ncor= a 0 37 19 39 5 5 296 281 0 0 9 9 35 20 17 c 0 138 150 76 276 262 7 17 311 12 277 73 104 183 116 g 0 89 125 175 32 56 12 18 10 13 30 234 88 71 148 t 0 59 29 33 10 0 8 7 2 298 7 7 96 49 42
oligos_6nt_test_vs_ctrl_m3_rc_shift1 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3_rc; m=7/10; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.743288; -sscCGAACTCCcss ; cor=; Ncor= a 0 43 35 43 9 1 367 370 3 14 7 11 49 37 32 c 0 175 137 267 353 47 13 17 376 8 333 329 229 171 145 g 0 120 197 53 34 356 8 6 24 27 54 57 63 151 179 t 0 67 36 42 9 1 17 12 2 356 11 8 64 46 49
oligos_7nt_test_vs_ctrl_m3_rc_shift0 (oligos_7nt_test_vs_ctrl_m3_rc)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3_rc; m=8/10; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.722896; ssGCCGAACTCCCss ; cor=; Ncor= a 60 29 14 17 4 1 272 271 3 12 5 17 30 24 25 c 96 148 31 255 290 25 13 27 300 16 258 239 223 145 105 g 97 90 269 22 17 294 20 13 15 24 48 56 29 115 156 t 68 54 7 27 10 1 16 10 3 269 10 9 39 37 35
oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5_rc; m=9/10; ncol2=16; w=0; offset=0; strand=R; shift=0; score=0.713271; cssCtCAACTGCCss ; cor=; Ncor= a 46 37 15 18 8 3 174 173 2 2 9 2 6 17 24 c 72 65 72 141 39 155 10 8 189 9 34 183 162 50 68 g 44 53 102 25 30 35 6 10 6 18 140 11 18 104 66 t 35 42 8 13 120 4 7 6 0 168 14 1 11 26 39
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=10/10; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.668838; -ssgCCAACTGGss- ; cor=; Ncor= a 0 40 24 64 9 9 307 284 1 4 11 7 40 39 0 c 0 132 148 79 269 259 4 26 312 7 40 61 123 161 0 g 0 109 134 152 32 58 10 13 12 10 267 252 102 92 0 t 0 47 22 33 18 2 7 5 3 307 10 8 63 36 0