position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084450_2026-01-22.084450_NstJFG/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title WT48h_inf3 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084450_2026-01-22.084450_NstJFG/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084450_2026-01-22.084450_NstJFG/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084450_2026-01-22.084450_NstJFG/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 317 Sum of sequence lengths 120655 Min sequence length 0 Max sequence length 1000 Average sequence length 380 Possible positions 120655 Oligonucleotide statistics: Total occurrences 119899 Position interval parameters: Position interval 20 Number of windows 50 Total positions 120655 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 10 184 2 -24 [-479,-460] -469.5 11 208 3 -23 [-459,-440] -449.5 14 265 4 -22 [-439,-420] -429.5 14 280 5 -21 [-419,-400] -409.5 14 280 6 -20 [-399,-380] -389.5 18 324 7 -19 [-379,-360] -369.5 20 372 8 -18 [-359,-340] -349.5 24 438 9 -17 [-339,-320] -329.5 30 538 10 -16 [-319,-300] -309.5 35 672 11 -15 [-299,-280] -289.5 39 768 12 -14 [-279,-260] -269.5 49 896 13 -13 [-259,-240] -249.5 52 1009 14 -12 [-239,-220] -229.5 62 1115 15 -11 [-219,-200] -209.5 83 1450 16 -10 [-199,-180] -189.5 110 1912 17 -9 [-179,-160] -169.5 163 2726 18 -8 [-159,-140] -149.5 223 3858 19 -7 [-139,-120] -129.5 298 5287 20 -6 [-119,-100] -109.5 316 6207 21 -5 [-99,-80] -89.5 317 6338 22 -4 [-79,-60] -69.5 317 6340 23 -3 [-59,-40] -49.5 317 6340 24 -2 [-39,-20] -29.5 317 6340 25 -1 [-19,0] -9.5 317 6340 26 0 [1,20] 10.5 317 6340 27 1 [21,40] 30.5 317 6340 28 2 [41,60] 50.5 317 6340 29 3 [61,80] 70.5 317 6340 30 4 [81,100] 90.5 317 6337 31 5 [101,120] 110.5 316 6194 32 6 [121,140] 130.5 293 5214 33 7 [141,160] 150.5 217 3788 34 8 [161,180] 170.5 159 2673 35 9 [181,200] 190.5 109 1888 36 10 [201,220] 210.5 83 1429 37 11 [221,240] 230.5 61 1103 38 12 [241,260] 250.5 52 1006 39 13 [261,280] 270.5 48 886 40 14 [281,300] 290.5 39 762 41 15 [301,320] 310.5 35 667 42 16 [321,340] 330.5 30 531 43 17 [341,360] 350.5 24 432 44 18 [361,380] 370.5 20 370 45 19 [381,400] 390.5 18 319 46 20 [401,420] 410.5 14 280 47 21 [421,440] 430.5 14 280 48 22 [441,460] 450.5 14 261 49 23 [461,480] 470.5 11 206 50 24 [481,500] 490.5 10 182 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 17334 | 43.4 | 49 | 7.0e-01 | 2.8 | -0.45 | 1 | 30 | 32 | 45 | 47 | 40 | 56 | 44 | 63 | 82 | 100 | 102 | 136 | 144 | 148 | 209 | 296 | 378 | 554 | 781 | 870 | 892 | 857 | 921 | 911 | 929 | 926 | 976 | 891 | 946 | 850 | 854 | 711 | 544 | 380 | 284 | 229 | 176 | 149 | 124 | 105 | 111 | 79 | 71 | 48 | 39 | 39 | 38 | 45 | 28 | 24 |
| t | t | 17852 | 33.3 | 49 | 9.6e-01 | 3.8 | -0.58 | 2 | 31 | 32 | 40 | 54 | 47 | 47 | 58 | 62 | 75 | 103 | 124 | 128 | 143 | 156 | 204 | 275 | 418 | 563 | 764 | 908 | 891 | 926 | 896 | 962 | 980 | 959 | 959 | 944 | 928 | 996 | 877 | 776 | 555 | 395 | 278 | 211 | 149 | 163 | 135 | 118 | 94 | 74 | 54 | 63 | 48 | 48 | 49 | 35 | 26 | 31 |
| c | c | 42534 | 26.7 | 49 | 1.0e+00 | 4 | -0.60 | 3 | 63 | 73 | 81 | 93 | 92 | 100 | 129 | 150 | 185 | 215 | 257 | 298 | 371 | 418 | 492 | 670 | 1009 | 1393 | 1870 | 2217 | 2287 | 2275 | 2254 | 2229 | 2218 | 2208 | 2224 | 2204 | 2221 | 2263 | 2224 | 1822 | 1335 | 947 | 664 | 505 | 375 | 333 | 314 | 275 | 217 | 194 | 143 | 126 | 108 | 91 | 91 | 89 | 65 | 57 |
| g | g | 42179 | 24.8 | 49 | 1.0e+00 | 4 | -0.60 | 4 | 60 | 71 | 99 | 86 | 101 | 121 | 141 | 163 | 193 | 234 | 265 | 317 | 351 | 393 | 525 | 651 | 914 | 1328 | 1858 | 2207 | 2230 | 2222 | 2193 | 2178 | 2166 | 2207 | 2141 | 2261 | 2205 | 2188 | 2199 | 1865 | 1321 | 935 | 662 | 484 | 403 | 361 | 313 | 264 | 245 | 184 | 164 | 133 | 124 | 102 | 102 | 92 | 87 | 70 |
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