/var/www/html/rsat/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084450_2026-01-22.084450_NstJFG/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084450_2026-01-22.084450_NstJFG/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title WT48h_inf3 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084450_2026-01-22.084450_NstJFG/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084450_2026-01-22.084450_NstJFG/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084450_2026-01-22.084450_NstJFG/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	317
	Sum of sequence lengths      	120655
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	380
	Possible positions           	120338
 Oligonucleotide statistics:
	Total occurrences    	119575
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	120338
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	10	184
	2	-24	[-479,-460]	-469.5	11	208
	3	-23	[-459,-440]	-449.5	14	265
	4	-22	[-439,-420]	-429.5	14	280
	5	-21	[-419,-400]	-409.5	14	280
	6	-20	[-399,-380]	-389.5	18	324
	7	-19	[-379,-360]	-369.5	20	372
	8	-18	[-359,-340]	-349.5	24	438
	9	-17	[-339,-320]	-329.5	30	538
	10	-16	[-319,-300]	-309.5	35	672
	11	-15	[-299,-280]	-289.5	39	768
	12	-14	[-279,-260]	-269.5	49	896
	13	-13	[-259,-240]	-249.5	52	1009
	14	-12	[-239,-220]	-229.5	62	1115
	15	-11	[-219,-200]	-209.5	83	1450
	16	-10	[-199,-180]	-189.5	110	1912
	17	-9	[-179,-160]	-169.5	163	2726
	18	-8	[-159,-140]	-149.5	223	3858
	19	-7	[-139,-120]	-129.5	298	5287
	20	-6	[-119,-100]	-109.5	316	6207
	21	-5	[-99,-80]	-89.5	317	6338
	22	-4	[-79,-60]	-69.5	317	6340
	23	-3	[-59,-40]	-49.5	317	6340
	24	-2	[-39,-20]	-29.5	317	6340
	25	-1	[-19,0]	-9.5	317	6340
	26	0	[1,20]	10.5	317	6340
	27	1	[21,40]	30.5	317	6340
	28	2	[41,60]	50.5	317	6340
	29	3	[61,80]	70.5	317	6340
	30	4	[81,100]	90.5	317	6336
	31	5	[101,120]	110.5	316	6171
	32	6	[121,140]	130.5	293	5138
	33	7	[141,160]	150.5	216	3730
	34	8	[161,180]	170.5	159	2623
	35	9	[181,200]	190.5	109	1862
	36	10	[201,220]	210.5	83	1407
	37	11	[221,240]	230.5	61	1094
	38	12	[241,260]	250.5	52	1002
	39	13	[261,280]	270.5	48	877
	40	14	[281,300]	290.5	39	758
	41	15	[301,320]	310.5	35	662
	42	16	[321,340]	330.5	29	525
	43	17	[341,360]	350.5	24	428
	44	18	[361,380]	370.5	20	368
	45	19	[381,400]	390.5	18	315
	46	20	[401,420]	410.5	14	280
	47	21	[421,440]	430.5	14	280
	48	22	[441,460]	450.5	14	258
	49	23	[461,480]	470.5	11	205
	50	24	[481,500]	490.5	10	172

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
gg gg 12637 68.7 49 3.3e-02 0.53 0.28 1 17 15 34 15 31 42 44 45 53 80 81 102 107 114 159 191 264 391 547 670 659 684 661 623 635 687 596 682 651 668 689 560 371 287 189 147 127 114 87 83 75 65 56 38 40 30 35 28 39 29
tt tt 2233 64.0 49 7.4e-02 1.2 -0.07 2 4 2 8 7 7 6 7 8 5 7 21 20 16 18 30 29 41 56 74 107 111 127 120 132 147 137 125 124 129 129 98 83 69 43 23 28 18 23 12 13 10 9 7 4 9 10 10 3 3 4
at at 2263 60.6 49 1.2e-01 2 -0.30 3 7 5 7 14 3 6 5 5 18 19 8 18 11 18 30 39 57 84 99 119 96 112 113 131 109 120 125 112 106 116 116 89 71 54 50 32 16 24 22 17 10 9 6 7 6 6 5 3 3 5
aa aa 2055 55.2 49 2.5e-01 4 -0.61 4 4 4 7 3 4 12 4 11 12 14 11 19 14 16 23 38 49 57 104 94 105 87 115 120 133 128 123 109 104 87 87 73 57 38 32 27 24 18 12 12 13 10 9 10 3 3 2 7 3 4
cc cc 12812 51.1 49 3.9e-01 6.3 -0.80 5 11 20 21 27 20 27 35 43 50 54 78 94 107 126 160 201 312 423 552 648 697 711 718 689 646 666 651 661 678 695 689 559 414 263 216 154 103 89 84 92 55 60 36 30 31 24 30 25 21 16
tg tg 6638 50.7 49 4.0e-01 6.5 -0.81 6 10 20 18 23 18 24 26 28 28 48 42 49 50 61 84 100 139 206 302 335 325 326 334 360 366 343 322 357 346 376 323 295 211 127 117 76 50 67 53 50 38 34 21 30 16 16 18 10 11 9
ca ca 6286 49.0 49 4.7e-01 7.6 -0.88 7 13 16 21 16 15 15 23 18 26 41 34 44 51 58 75 89 164 204 274 323 341 321 318 332 348 339 333 314 335 338 334 215 196 148 88 94 52 54 45 41 42 29 24 18 6 10 17 14 11 9
ac ac 7491 47.9 49 5.2e-01 8.3 -0.92 8 10 13 11 16 21 19 16 29 30 43 45 59 74 71 86 126 152 236 337 375 414 358 411 387 410 394 434 378 434 362 392 307 217 160 115 88 83 61 53 42 51 41 35 15 18 18 17 11 10 6
ga ga 7696 46.9 49 5.6e-01 8.9 -0.95 9 12 10 15 23 17 24 18 33 39 42 45 62 67 64 104 131 153 240 359 390 384 387 423 397 388 394 453 404 417 354 375 365 239 159 134 101 72 63 57 50 50 31 30 18 28 21 19 16 11 8
tc tc 7670 44.3 49 6.6e-01 11 -1.03 10 15 8 12 19 18 14 24 22 37 43 51 50 69 65 77 121 208 257 342 407 387 411 377 403 413 412 447 394 372 430 392 331 225 187 111 91 61 57 58 51 32 29 19 25 21 17 18 16 11 13
ct ct 6037 40.7 49 8.0e-01 13 -1.10 11 13 11 12 17 17 16 23 23 23 28 46 36 58 56 62 100 144 221 289 304 292 327 292 300 335 305 311 292 324 343 292 269 173 143 87 70 52 50 50 44 30 33 22 25 14 14 13 15 11 10
ag ag 5487 37.5 49 8.8e-01 14 -1.15 12 9 10 20 14 12 19 19 18 22 24 38 40 45 43 70 93 120 177 241 282 277 300 282 273 277 284 294 292 302 285 257 229 191 123 85 79 52 46 37 34 36 19 21 15 12 12 14 23 12 8
cg cg 17297 35.7 49 9.2e-01 15 -1.17 13 26 26 27 33 40 42 48 66 86 92 99 124 155 178 195 280 389 545 755 941 957 916 926 908 889 898 929 937 884 887 904 754 533 376 264 176 165 139 132 97 90 70 59 53 56 43 31 34 22 21
gc gc 14439 34.0 49 9.5e-01 15 -1.18 14 24 32 34 35 34 36 53 62 67 69 90 98 117 151 174 221 325 495 639 771 806 788 732 765 734 735 705 749 759 770 755 590 458 316 219 155 135 117 117 88 76 61 57 51 36 32 28 34 27 17
gt gt 7282 28.4 49 9.9e-01 16 -1.20 15 7 14 16 13 19 19 26 23 34 43 49 55 60 63 88 108 172 202 313 376 379 363 376 393 409 391 387 426 378 395 369 325 231 152 112 74 67 65 48 40 43 24 20 25 18 19 20 13 9 11
ta ta 1252 26.5 49 1.0e+00 16 -1.20 16 2 2 2 5 4 3 1 4 4 5 10 9 8 12 13 25 29 44 46 59 68 62 65 67 54 67 65 69 81 61 59 54 41 31 20 15 17 15 10 4 11 1 6 4 1 5 3 6 1 2 
 Host name	rsat
 Job started	2026-01-22.084454
 Job done	2026-01-22.084455
 Seconds	0.9
	user	0.9
	system	0.02
	cuser	0
;	csystem	0