One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084450_2026-01-22.084450_NstJFG/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084450_2026-01-22.084450_NstJFG/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift1 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=13; shift=1; ncol=14; -ssgCCAACTCCss ; Alignment reference a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/8; ncol2=13; w=0; offset=0; strand=D; shift=1; score= 1; -ssgCCAACTCCss ; cor=; Ncor= a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3; m=2/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.918518; -csgCCAACTCCcs ; cor=; Ncor= a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=3/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.832305; -ssgCCAACTCGbs ; cor=; Ncor= a 0 21 8 21 7 2 148 145 0 0 4 2 21 14 c 0 78 71 39 137 130 6 9 162 5 148 26 57 88 g 0 45 72 88 17 34 6 10 4 6 13 138 44 42 t 0 22 15 18 5 0 6 2 0 155 1 0 44 22

oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1; m=4/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.816149; -ssgCCAACTCGcc ; cor=; Ncor= a 0 16 9 17 7 2 129 108 0 2 2 2 11 10 c 0 64 53 21 118 110 5 13 133 1 124 17 87 76 g 0 41 61 85 9 25 3 14 5 8 8 119 26 32 t 0 17 15 15 4 1 1 3 0 127 4 0 14 20

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3; m=5/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.72018; -ssgCCAACTGGcc ; cor=; Ncor= a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4; m=6/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.650863; bsGcCGAACTCGyc ; cor=; Ncor= a 38 23 17 31 5 0 214 211 0 9 0 4 42 21 c 59 112 34 130 205 20 6 11 208 7 191 39 66 126 g 61 70 167 47 16 210 5 3 21 5 38 187 54 56 t 74 27 14 24 6 2 7 7 3 211 3 2 70 29

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2; m=7/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.633739; bsGCCGAACTCGcs ; cor=; Ncor= a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26

oligos_7nt_test_vs_ctrl_m4_shift4 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4; m=8/8; ncol2=11; w=0; offset=3; strand=D; shift=4; score=0.531585; ----ssAACTGCCs ; cor=; Ncor= a 0 0 0 0 41 20 308 276 4 17 11 11 9 24 c 0 0 0 0 142 135 9 34 329 21 31 287 292 146 g 0 0 0 0 100 172 11 20 5 13 287 31 23 138 t 0 0 0 0 56 12 11 9 1 288 10 10 15 31

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift4 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift4 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=11; shift=4; ncol=15; ----ssAACTGCCss ; Alignment reference a 0 0 0 0 41 20 308 276 4 17 11 11 9 24 31 c 0 0 0 0 142 135 9 34 329 21 31 287 292 146 109 g 0 0 0 0 100 172 11 20 5 13 287 31 23 138 160 t 0 0 0 0 56 12 11 9 1 288 10 10 15 31 39

oligos_7nt_test_vs_ctrl_m4_shift4 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/7; ncol2=11; w=0; offset=0; strand=D; shift=4; score= 1; ----ssAACTGCCss ; cor=; Ncor= a 0 0 0 0 41 20 308 276 4 17 11 11 9 24 31 c 0 0 0 0 142 135 9 34 329 21 31 287 292 146 109 g 0 0 0 0 100 172 11 20 5 13 287 31 23 138 160 t 0 0 0 0 56 12 11 9 1 288 10 10 15 31 39

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3; m=2/7; ncol2=14; w=-3; offset=-3; strand=D; shift=1; score=0.631258; -ssgCCAACTGGccs ; cor=; Ncor= a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 10 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 58 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 65 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22 12

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=3/7; ncol2=14; w=-3; offset=-3; strand=D; shift=1; score=0.600473; -csgCCAACTCCcss ; cor=; Ncor= a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 17 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 81 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 63 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33 18

oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2_rc; m=4/7; ncol2=15; w=-4; offset=-4; strand=R; shift=0; score=0.591358; ysGcCGAACTGGcss ; cor=; Ncor= a 49 17 22 31 6 1 222 215 1 11 3 11 40 16 22 c 65 118 39 162 211 18 6 16 230 15 40 41 129 139 74 g 61 89 173 40 22 229 10 12 15 8 203 190 45 75 128 t 73 24 14 15 9 0 10 5 2 214 2 6 34 18 24

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5; m=5/7; ncol2=13; w=-3; offset=-3; strand=D; shift=1; score=0.531585; -ssgCCAACTCCss- ; cor=; Ncor= a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 0 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 0 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 0 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34 0

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=6/7; ncol2=15; w=-4; offset=-4; strand=D; shift=0; score=0.521902; bsGCCGAACTCGcss ; cor=; Ncor= a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 17 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 57 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 104 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26 18

oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5_rc; m=7/7; ncol2=13; w=-4; offset=-4; strand=R; shift=0; score=0.503907; ksgCCGAACTGsc-- ; cor=; Ncor= a 47 15 16 14 4 0 211 204 1 8 4 27 41 0 0 c 59 109 49 193 216 14 7 12 227 8 35 96 90 0 0 g 60 93 156 20 14 223 8 16 9 10 195 97 53 0 0 t 72 21 17 11 4 1 12 6 1 212 4 18 54 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift0 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=15; shift=0; ncol=15; bsGcCGAACTCGycs ; Alignment reference a 38 23 17 31 5 0 214 211 0 9 0 4 42 21 23 c 59 112 34 130 205 20 6 11 208 7 191 39 66 126 71 g 61 70 167 47 16 210 5 3 21 5 38 187 54 56 122 t 74 27 14 24 6 2 7 7 3 211 3 2 70 29 16

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; bsGcCGAACTCGycs ; cor=; Ncor= a 38 23 17 31 5 0 214 211 0 9 0 4 42 21 23 c 59 112 34 130 205 20 6 11 208 7 191 39 66 126 71 g 61 70 167 47 16 210 5 3 21 5 38 187 54 56 122 t 74 27 14 24 6 2 7 7 3 211 3 2 70 29 16

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=2/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.981388; bsGCCGAACTCGcss ; cor=; Ncor= a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 17 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 57 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 104 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26 18

oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2_rc; m=3/9; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.902615; ysGcCGAACTGGcss ; cor=; Ncor= a 49 17 22 31 6 1 222 215 1 11 3 11 40 16 22 c 65 118 39 162 211 18 6 16 230 15 40 41 129 139 74 g 61 89 173 40 22 229 10 12 15 8 203 190 45 75 128 t 73 24 14 15 9 0 10 5 2 214 2 6 34 18 24

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=4/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.801011; -ssgCCAACTCGbss ; cor=; Ncor= a 0 21 8 21 7 2 148 145 0 0 4 2 21 14 10 c 0 78 71 39 137 130 6 9 162 5 148 26 57 88 65 g 0 45 72 88 17 34 6 10 4 6 13 138 44 42 74 t 0 22 15 18 5 0 6 2 0 155 1 0 44 22 17

oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=5/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.773786; -ssgCCAACTCGccs ; cor=; Ncor= a 0 16 9 17 7 2 129 108 0 2 2 2 11 10 6 c 0 64 53 21 118 110 5 13 133 1 124 17 87 76 51 g 0 41 61 85 9 25 3 14 5 8 8 119 26 32 67 t 0 17 15 15 4 1 1 3 0 127 4 0 14 20 14

oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5_rc; m=6/9; ncol2=13; w=0; offset=0; strand=R; shift=0; score=0.754433; ksgCCGAACTGsc-- ; cor=; Ncor= a 47 15 16 14 4 0 211 204 1 8 4 27 41 0 0 c 59 109 49 193 216 14 7 12 227 8 35 96 90 0 0 g 60 93 156 20 14 223 8 16 9 10 195 97 53 0 0 t 72 21 17 11 4 1 12 6 1 212 4 18 54 0 0

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3; m=7/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.709717; -ssgCCAACTGGccs ; cor=; Ncor= a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 10 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 58 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 65 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22 12

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=8/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.674414; -csgCCAACTCCcss ; cor=; Ncor= a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 17 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 81 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 63 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33 18

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5; m=9/9; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.650863; -ssgCCAACTCCss- ; cor=; Ncor= a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 0 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 0 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 0 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=15; shift=0; ncol=15; bsGCCGAACTCGcss ; Alignment reference a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 17 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 57 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 104 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26 18

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; bsGCCGAACTCGcss ; cor=; Ncor= a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 17 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 57 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 104 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26 18

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=2/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.981388; bsGcCGAACTCGycs ; cor=; Ncor= a 38 23 17 31 5 0 214 211 0 9 0 4 42 21 23 c 59 112 34 130 205 20 6 11 208 7 191 39 66 126 71 g 61 70 167 47 16 210 5 3 21 5 38 187 54 56 122 t 74 27 14 24 6 2 7 7 3 211 3 2 70 29 16

oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2_rc; m=3/10; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.924681; ysGcCGAACTGGcss ; cor=; Ncor= a 49 17 22 31 6 1 222 215 1 11 3 11 40 16 22 c 65 118 39 162 211 18 6 16 230 15 40 41 129 139 74 g 61 89 173 40 22 229 10 12 15 8 203 190 45 75 128 t 73 24 14 15 9 0 10 5 2 214 2 6 34 18 24

oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5_rc; m=4/10; ncol2=13; w=0; offset=0; strand=R; shift=0; score=0.776234; ksgCCGAACTGsc-- ; cor=; Ncor= a 47 15 16 14 4 0 211 204 1 8 4 27 41 0 0 c 59 109 49 193 216 14 7 12 227 8 35 96 90 0 0 g 60 93 156 20 14 223 8 16 9 10 195 97 53 0 0 t 72 21 17 11 4 1 12 6 1 212 4 18 54 0 0

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=5/10; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.764297; -ssgCCAACTCGbss ; cor=; Ncor= a 0 21 8 21 7 2 148 145 0 0 4 2 21 14 10 c 0 78 71 39 137 130 6 9 162 5 148 26 57 88 65 g 0 45 72 88 17 34 6 10 4 6 13 138 44 42 74 t 0 22 15 18 5 0 6 2 0 155 1 0 44 22 17

oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=6/10; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.756594; -ssgCCAACTCGccs ; cor=; Ncor= a 0 16 9 17 7 2 129 108 0 2 2 2 11 10 6 c 0 64 53 21 118 110 5 13 133 1 124 17 87 76 51 g 0 41 61 85 9 25 3 14 5 8 8 119 26 32 67 t 0 17 15 15 4 1 1 3 0 127 4 0 14 20 14

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3; m=7/10; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.706636; -ssgCCAACTGGccs ; cor=; Ncor= a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 10 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 58 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 65 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22 12

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=8/10; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.670742; -csgCCAACTCCcss ; cor=; Ncor= a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 17 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 81 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 63 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33 18

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=9/10; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.633739; -ssgCCAACTCCss- ; cor=; Ncor= a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 0 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 0 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 0 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34 0

oligos_7nt_test_vs_ctrl_m4_shift4 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=10/10; ncol2=11; w=0; offset=4; strand=D; shift=4; score=0.521902; ----ssAACTGCCss ; cor=; Ncor= a 0 0 0 0 41 20 308 276 4 17 11 11 9 24 31 c 0 0 0 0 142 135 9 34 329 21 31 287 292 146 109 g 0 0 0 0 100 172 11 20 5 13 287 31 23 138 160 t 0 0 0 0 56 12 11 9 1 288 10 10 15 31 39

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift1 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=14; shift=1; ncol=15; -ssgCCAACTCGbss ; Alignment reference a 0 21 8 21 7 2 148 145 0 0 4 2 21 14 10 c 0 78 71 39 137 130 6 9 162 5 148 26 57 88 65 g 0 45 72 88 17 34 6 10 4 6 13 138 44 42 74 t 0 22 15 18 5 0 6 2 0 155 1 0 44 22 17

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -ssgCCAACTCGbss ; cor=; Ncor= a 0 21 8 21 7 2 148 145 0 0 4 2 21 14 10 c 0 78 71 39 137 130 6 9 162 5 148 26 57 88 65 g 0 45 72 88 17 34 6 10 4 6 13 138 44 42 74 t 0 22 15 18 5 0 6 2 0 155 1 0 44 22 17

oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=2/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.984145; -ssgCCAACTCGccs ; cor=; Ncor= a 0 16 9 17 7 2 129 108 0 2 2 2 11 10 6 c 0 64 53 21 118 110 5 13 133 1 124 17 87 76 51 g 0 41 61 85 9 25 3 14 5 8 8 119 26 32 67 t 0 17 15 15 4 1 1 3 0 127 4 0 14 20 14

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=3/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 0.8863; -csgCCAACTCCcss ; cor=; Ncor= a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 17 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 81 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 63 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33 18

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3; m=4/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.873796; -ssgCCAACTGGccs ; cor=; Ncor= a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 10 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 58 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 65 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22 12

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=5/8; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.832305; -ssgCCAACTCCss- ; cor=; Ncor= a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 0 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 0 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 0 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34 0

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=6/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.801011; bsGcCGAACTCGycs ; cor=; Ncor= a 38 23 17 31 5 0 214 211 0 9 0 4 42 21 23 c 59 112 34 130 205 20 6 11 208 7 191 39 66 126 71 g 61 70 167 47 16 210 5 3 21 5 38 187 54 56 122 t 74 27 14 24 6 2 7 7 3 211 3 2 70 29 16

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=7/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.764297; bsGCCGAACTCGcss ; cor=; Ncor= a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 17 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 57 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 104 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26 18

oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2_rc; m=8/8; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.682466; ysGcCGAACTGGcss ; cor=; Ncor= a 49 17 22 31 6 1 222 215 1 11 3 11 40 16 22 c 65 118 39 162 211 18 6 16 230 15 40 41 129 139 74 g 61 89 173 40 22 229 10 12 15 8 203 190 45 75 128 t 73 24 14 15 9 0 10 5 2 214 2 6 34 18 24

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift1 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=14; shift=1; ncol=15; -csgCCAACTCCcss ; Alignment reference a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 17 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 81 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 63 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33 18

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -csgCCAACTCCcss ; cor=; Ncor= a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 17 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 81 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 63 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33 18

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5; m=2/8; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.918518; -ssgCCAACTCCss- ; cor=; Ncor= a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 0 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 0 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 0 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34 0

oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1; m=3/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.887516; -ssgCCAACTCGccs ; cor=; Ncor= a 0 16 9 17 7 2 129 108 0 2 2 2 11 10 6 c 0 64 53 21 118 110 5 13 133 1 124 17 87 76 51 g 0 41 61 85 9 25 3 14 5 8 8 119 26 32 67 t 0 17 15 15 4 1 1 3 0 127 4 0 14 20 14

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=4/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 0.8863; -ssgCCAACTCGbss ; cor=; Ncor= a 0 21 8 21 7 2 148 145 0 0 4 2 21 14 10 c 0 78 71 39 137 130 6 9 162 5 148 26 57 88 65 g 0 45 72 88 17 34 6 10 4 6 13 138 44 42 74 t 0 22 15 18 5 0 6 2 0 155 1 0 44 22 17

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=5/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.784471; -ssgCCAACTGGccs ; cor=; Ncor= a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 10 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 58 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 65 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22 12

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4; m=6/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.674414; bsGcCGAACTCGycs ; cor=; Ncor= a 38 23 17 31 5 0 214 211 0 9 0 4 42 21 23 c 59 112 34 130 205 20 6 11 208 7 191 39 66 126 71 g 61 70 167 47 16 210 5 3 21 5 38 187 54 56 122 t 74 27 14 24 6 2 7 7 3 211 3 2 70 29 16

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2; m=7/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.670742; bsGCCGAACTCGcss ; cor=; Ncor= a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 17 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 57 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 104 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26 18

oligos_7nt_test_vs_ctrl_m4_shift4 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4; m=8/8; ncol2=11; w=0; offset=3; strand=D; shift=4; score=0.600473; ----ssAACTGCCss ; cor=; Ncor= a 0 0 0 0 41 20 308 276 4 17 11 11 9 24 31 c 0 0 0 0 142 135 9 34 329 21 31 287 292 146 109 g 0 0 0 0 100 172 11 20 5 13 287 31 23 138 160 t 0 0 0 0 56 12 11 9 1 288 10 10 15 31 39

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift2 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift2 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=13; shift=2; ncol=15; --gsCAGTTCGGcsm ; Alignment reference a 0 0 54 18 4 212 1 6 12 1 4 11 17 21 72 c 0 0 53 97 195 10 9 16 8 223 14 20 156 93 60 g 0 0 90 96 35 8 227 12 7 14 216 193 49 109 59 t 0 0 41 27 4 8 1 204 211 0 4 14 16 15 47

oligos_7nt_test_vs_ctrl_m5_shift2 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/6; ncol2=13; w=0; offset=0; strand=D; shift=2; score= 1; --gsCAGTTCGGcsm ; cor=; Ncor= a 0 0 54 18 4 212 1 6 12 1 4 11 17 21 72 c 0 0 53 97 195 10 9 16 8 223 14 20 156 93 60 g 0 0 90 96 35 8 227 12 7 14 216 193 49 109 59 t 0 0 41 27 4 8 1 204 211 0 4 14 16 15 47

oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2; m=2/6; ncol2=15; w=-2; offset=-2; strand=D; shift=0; score=0.841941; ssgCCAGTTCGgCsr ; cor=; Ncor= a 24 18 34 6 2 214 2 5 10 0 9 15 14 24 73 c 128 75 45 190 203 8 15 12 10 229 22 40 173 89 61 g 74 139 129 41 40 15 230 16 6 18 211 162 39 118 65 t 22 16 40 11 3 11 1 215 222 1 6 31 22 17 49

oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2_rc; m=3/6; ncol2=15; w=-2; offset=-2; strand=R; shift=0; score=0.776234; ssgCGAGTTCGGCsv ; cor=; Ncor= a 18 26 25 4 0 169 0 3 9 0 5 15 16 23 58 c 104 49 32 142 42 11 20 4 4 185 9 23 142 59 54 g 57 108 117 38 151 11 175 6 6 11 180 137 23 99 49 t 17 13 22 12 3 5 1 183 177 0 2 21 15 15 35

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4_rc; m=4/6; ncol2=15; w=-2; offset=-2; strand=R; shift=0; score=0.754433; sgrCGAGTTCGgCsv ; cor=; Ncor= a 16 29 70 2 3 211 3 7 7 2 6 24 14 27 74 c 122 56 54 187 38 5 21 3 5 210 16 47 167 70 61 g 71 126 66 39 191 7 208 11 6 20 205 130 34 112 59 t 23 21 42 4 0 9 0 211 214 0 5 31 17 23 38

oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3_rc; m=5/6; ncol2=14; w=-2; offset=-2; strand=R; shift=0; score=0.631249; sggCCAGTTGGcss- ; cor=; Ncor= a 12 22 20 2 4 132 0 4 2 1 5 13 16 17 0 c 65 35 30 117 117 4 6 9 9 31 8 81 65 48 0 g 58 70 81 25 19 5 139 11 3 111 127 33 55 61 0 t 10 18 14 1 5 4 0 121 131 2 5 18 9 19 0

oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4_rc; m=6/6; ncol2=11; w=-2; offset=-2; strand=R; shift=0; score=0.503907; ssGGCAGTTss---- ; cor=; Ncor= a 39 31 15 10 10 288 1 9 11 12 56 0 0 0 0 c 160 138 23 31 287 13 5 20 11 172 100 0 0 0 0 g 109 146 292 287 31 21 329 34 9 135 142 0 0 0 0 t 31 24 9 11 11 17 4 276 308 20 41 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift0 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=15; shift=0; ncol=15; ssgCCAGTTCGgCsr ; Alignment reference a 24 18 34 6 2 214 2 5 10 0 9 15 14 24 73 c 128 75 45 190 203 8 15 12 10 229 22 40 173 89 61 g 74 139 129 41 40 15 230 16 6 18 211 162 39 118 65 t 22 16 40 11 3 11 1 215 222 1 6 31 22 17 49

oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/8; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; ssgCCAGTTCGgCsr ; cor=; Ncor= a 24 18 34 6 2 214 2 5 10 0 9 15 14 24 73 c 128 75 45 190 203 8 15 12 10 229 22 40 173 89 61 g 74 139 129 41 40 15 230 16 6 18 211 162 39 118 65 t 22 16 40 11 3 11 1 215 222 1 6 31 22 17 49

oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2_rc; m=2/8; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.924681; ssgCGAGTTCGGCsv ; cor=; Ncor= a 18 26 25 4 0 169 0 3 9 0 5 15 16 23 58 c 104 49 32 142 42 11 20 4 4 185 9 23 142 59 54 g 57 108 117 38 151 11 175 6 6 11 180 137 23 99 49 t 17 13 22 12 3 5 1 183 177 0 2 21 15 15 35

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4_rc; m=3/8; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.902615; sgrCGAGTTCGgCsv ; cor=; Ncor= a 16 29 70 2 3 211 3 7 7 2 6 24 14 27 74 c 122 56 54 187 38 5 21 3 5 210 16 47 167 70 61 g 71 126 66 39 191 7 208 11 6 20 205 130 34 112 59 t 23 21 42 4 0 9 0 211 214 0 5 31 17 23 38

oligos_7nt_test_vs_ctrl_m5_shift2 (oligos_7nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5; m=4/8; ncol2=13; w=0; offset=2; strand=D; shift=2; score=0.841941; --gsCAGTTCGGcsm ; cor=; Ncor= a 0 0 54 18 4 212 1 6 12 1 4 11 17 21 72 c 0 0 53 97 195 10 9 16 8 223 14 20 156 93 60 g 0 0 90 96 35 8 227 12 7 14 216 193 49 109 59 t 0 0 41 27 4 8 1 204 211 0 4 14 16 15 47

oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3_rc; m=5/8; ncol2=14; w=0; offset=0; strand=R; shift=0; score=0.790424; sggCCAGTTGGcss- ; cor=; Ncor= a 12 22 20 2 4 132 0 4 2 1 5 13 16 17 0 c 65 35 30 117 117 4 6 9 9 31 8 81 65 48 0 g 58 70 81 25 19 5 139 11 3 111 127 33 55 61 0 t 10 18 14 1 5 4 0 121 131 2 5 18 9 19 0

oligos_6nt_test_vs_ctrl_m1_rc_shift0 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1_rc; m=6/8; ncol2=14; w=0; offset=0; strand=R; shift=0; score=0.682466; ssvCGAGTTGGcss- ; cor=; Ncor= a 17 22 44 0 1 155 0 2 6 0 5 18 15 22 0 c 74 42 44 138 13 6 4 10 6 34 17 88 72 45 0 g 65 88 57 26 148 5 162 9 6 130 137 39 71 78 0 t 10 14 21 2 4 0 0 145 148 2 7 21 8 21 0

oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1_rc; m=7/8; ncol2=14; w=0; offset=0; strand=R; shift=0; score=0.671173; sggCGAGTTGGcss- ; cor=; Ncor= a 14 20 14 0 4 127 0 3 1 1 4 15 15 17 0 c 67 32 26 119 8 8 5 14 3 25 9 85 61 41 0 g 51 76 87 17 124 1 133 13 5 110 118 21 53 64 0 t 6 10 11 2 2 2 0 108 129 2 7 17 9 16 0

oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4_rc; m=8/8; ncol2=11; w=0; offset=0; strand=R; shift=0; score=0.591358; ssGGCAGTTss---- ; cor=; Ncor= a 39 31 15 10 10 288 1 9 11 12 56 0 0 0 0 c 160 138 23 31 287 13 5 20 11 172 100 0 0 0 0 g 109 146 292 287 31 21 329 34 9 135 142 0 0 0 0 t 31 24 9 11 11 17 4 276 308 20 41 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift1 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=14; shift=1; ncol=15; -ssgCCAACTCGccs ; Alignment reference a 0 16 9 17 7 2 129 108 0 2 2 2 11 10 6 c 0 64 53 21 118 110 5 13 133 1 124 17 87 76 51 g 0 41 61 85 9 25 3 14 5 8 8 119 26 32 67 t 0 17 15 15 4 1 1 3 0 127 4 0 14 20 14

oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -ssgCCAACTCGccs ; cor=; Ncor= a 0 16 9 17 7 2 129 108 0 2 2 2 11 10 6 c 0 64 53 21 118 110 5 13 133 1 124 17 87 76 51 g 0 41 61 85 9 25 3 14 5 8 8 119 26 32 67 t 0 17 15 15 4 1 1 3 0 127 4 0 14 20 14

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=2/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.984145; -ssgCCAACTCGbss ; cor=; Ncor= a 0 21 8 21 7 2 148 145 0 0 4 2 21 14 10 c 0 78 71 39 137 130 6 9 162 5 148 26 57 88 65 g 0 45 72 88 17 34 6 10 4 6 13 138 44 42 74 t 0 22 15 18 5 0 6 2 0 155 1 0 44 22 17

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=3/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.887516; -csgCCAACTCCcss ; cor=; Ncor= a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 17 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 81 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 63 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33 18

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3; m=4/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.878336; -ssgCCAACTGGccs ; cor=; Ncor= a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 10 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 58 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 65 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22 12

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=5/8; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.816149; -ssgCCAACTCCss- ; cor=; Ncor= a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 0 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 0 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 0 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34 0

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=6/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.773786; bsGcCGAACTCGycs ; cor=; Ncor= a 38 23 17 31 5 0 214 211 0 9 0 4 42 21 23 c 59 112 34 130 205 20 6 11 208 7 191 39 66 126 71 g 61 70 167 47 16 210 5 3 21 5 38 187 54 56 122 t 74 27 14 24 6 2 7 7 3 211 3 2 70 29 16

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=7/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.756594; bsGCCGAACTCGcss ; cor=; Ncor= a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 17 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 57 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 104 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26 18

oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2_rc; m=8/8; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.671173; ysGcCGAACTGGcss ; cor=; Ncor= a 49 17 22 31 6 1 222 215 1 11 3 11 40 16 22 c 65 118 39 162 211 18 6 16 230 15 40 41 129 139 74 g 61 89 173 40 22 229 10 12 15 8 203 190 45 75 128 t 73 24 14 15 9 0 10 5 2 214 2 6 34 18 24

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift1 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=14; shift=1; ncol=15; -ssgCCAACTGGccs ; Alignment reference a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 10 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 58 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 65 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22 12

oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -ssgCCAACTGGccs ; cor=; Ncor= a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 10 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 58 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 65 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22 12

oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1; m=2/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.878336; -ssgCCAACTCGccs ; cor=; Ncor= a 0 16 9 17 7 2 129 108 0 2 2 2 11 10 6 c 0 64 53 21 118 110 5 13 133 1 124 17 87 76 51 g 0 41 61 85 9 25 3 14 5 8 8 119 26 32 67 t 0 17 15 15 4 1 1 3 0 127 4 0 14 20 14

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=3/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.873796; -ssgCCAACTCGbss ; cor=; Ncor= a 0 21 8 21 7 2 148 145 0 0 4 2 21 14 10 c 0 78 71 39 137 130 6 9 162 5 148 26 57 88 65 g 0 45 72 88 17 34 6 10 4 6 13 138 44 42 74 t 0 22 15 18 5 0 6 2 0 155 1 0 44 22 17

oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2_rc; m=4/10; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.790424; ysGcCGAACTGGcss ; cor=; Ncor= a 49 17 22 31 6 1 222 215 1 11 3 11 40 16 22 c 65 118 39 162 211 18 6 16 230 15 40 41 129 139 74 g 61 89 173 40 22 229 10 12 15 8 203 190 45 75 128 t 73 24 14 15 9 0 10 5 2 214 2 6 34 18 24

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=5/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.784471; -csgCCAACTCCcss ; cor=; Ncor= a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 17 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 81 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 63 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33 18

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5; m=6/10; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.72018; -ssgCCAACTCCss- ; cor=; Ncor= a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 0 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 0 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 0 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34 0

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4; m=7/10; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.709717; bsGcCGAACTCGycs ; cor=; Ncor= a 38 23 17 31 5 0 214 211 0 9 0 4 42 21 23 c 59 112 34 130 205 20 6 11 208 7 191 39 66 126 71 g 61 70 167 47 16 210 5 3 21 5 38 187 54 56 122 t 74 27 14 24 6 2 7 7 3 211 3 2 70 29 16

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2; m=8/10; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.706636; bsGCCGAACTCGcss ; cor=; Ncor= a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 17 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 57 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 104 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26 18

oligos_7nt_test_vs_ctrl_m4_shift4 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4; m=9/10; ncol2=11; w=0; offset=3; strand=D; shift=4; score=0.631258; ----ssAACTGCCss ; cor=; Ncor= a 0 0 0 0 41 20 308 276 4 17 11 11 9 24 31 c 0 0 0 0 142 135 9 34 329 21 31 287 292 146 109 g 0 0 0 0 100 172 11 20 5 13 287 31 23 138 160 t 0 0 0 0 56 12 11 9 1 288 10 10 15 31 39

oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m5_rc; m=10/10; ncol2=13; w=-1; offset=-1; strand=R; shift=0; score=0.631249; ksgCCGAACTGsc-- ; cor=; Ncor= a 47 15 16 14 4 0 211 204 1 8 4 27 41 0 0 c 59 109 49 193 216 14 7 12 227 8 35 96 90 0 0 g 60 93 156 20 14 223 8 16 9 10 195 97 53 0 0 t 72 21 17 11 4 1 12 6 1 212 4 18 54 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=13; shift=1; ncol=14; -ssgCCAACTCCss ; Alignment reference a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/8; ncol2=13; w=0; offset=0; strand=D; shift=1; score= 1; -ssgCCAACTCCss ; cor=; Ncor= a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3; m=2/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.918518; -csgCCAACTCCcs ; cor=; Ncor= a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=3/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.832305; -ssgCCAACTCGbs ; cor=; Ncor= a 0 21 8 21 7 2 148 145 0 0 4 2 21 14 c 0 78 71 39 137 130 6 9 162 5 148 26 57 88 g 0 45 72 88 17 34 6 10 4 6 13 138 44 42 t 0 22 15 18 5 0 6 2 0 155 1 0 44 22
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1; m=4/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.816149; -ssgCCAACTCGcc ; cor=; Ncor= a 0 16 9 17 7 2 129 108 0 2 2 2 11 10 c 0 64 53 21 118 110 5 13 133 1 124 17 87 76 g 0 41 61 85 9 25 3 14 5 8 8 119 26 32 t 0 17 15 15 4 1 1 3 0 127 4 0 14 20
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3; m=5/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.72018; -ssgCCAACTGGcc ; cor=; Ncor= a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4; m=6/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.650863; bsGcCGAACTCGyc ; cor=; Ncor= a 38 23 17 31 5 0 214 211 0 9 0 4 42 21 c 59 112 34 130 205 20 6 11 208 7 191 39 66 126 g 61 70 167 47 16 210 5 3 21 5 38 187 54 56 t 74 27 14 24 6 2 7 7 3 211 3 2 70 29
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2; m=7/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.633739; bsGCCGAACTCGcs ; cor=; Ncor= a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26
oligos_7nt_test_vs_ctrl_m4_shift4 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4; m=8/8; ncol2=11; w=0; offset=3; strand=D; shift=4; score=0.531585; ----ssAACTGCCs ; cor=; Ncor= a 0 0 0 0 41 20 308 276 4 17 11 11 9 24 c 0 0 0 0 142 135 9 34 329 21 31 287 292 146 g 0 0 0 0 100 172 11 20 5 13 287 31 23 138 t 0 0 0 0 56 12 11 9 1 288 10 10 15 31

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift4 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=11; shift=4; ncol=15; ----ssAACTGCCss ; Alignment reference a 0 0 0 0 41 20 308 276 4 17 11 11 9 24 31 c 0 0 0 0 142 135 9 34 329 21 31 287 292 146 109 g 0 0 0 0 100 172 11 20 5 13 287 31 23 138 160 t 0 0 0 0 56 12 11 9 1 288 10 10 15 31 39
oligos_7nt_test_vs_ctrl_m4_shift4 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/7; ncol2=11; w=0; offset=0; strand=D; shift=4; score= 1; ----ssAACTGCCss ; cor=; Ncor= a 0 0 0 0 41 20 308 276 4 17 11 11 9 24 31 c 0 0 0 0 142 135 9 34 329 21 31 287 292 146 109 g 0 0 0 0 100 172 11 20 5 13 287 31 23 138 160 t 0 0 0 0 56 12 11 9 1 288 10 10 15 31 39
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3; m=2/7; ncol2=14; w=-3; offset=-3; strand=D; shift=1; score=0.631258; -ssgCCAACTGGccs ; cor=; Ncor= a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 10 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 58 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 65 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22 12
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=3/7; ncol2=14; w=-3; offset=-3; strand=D; shift=1; score=0.600473; -csgCCAACTCCcss ; cor=; Ncor= a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 17 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 81 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 63 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33 18
oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2_rc; m=4/7; ncol2=15; w=-4; offset=-4; strand=R; shift=0; score=0.591358; ysGcCGAACTGGcss ; cor=; Ncor= a 49 17 22 31 6 1 222 215 1 11 3 11 40 16 22 c 65 118 39 162 211 18 6 16 230 15 40 41 129 139 74 g 61 89 173 40 22 229 10 12 15 8 203 190 45 75 128 t 73 24 14 15 9 0 10 5 2 214 2 6 34 18 24
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5; m=5/7; ncol2=13; w=-3; offset=-3; strand=D; shift=1; score=0.531585; -ssgCCAACTCCss- ; cor=; Ncor= a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 0 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 0 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 0 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34 0
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=6/7; ncol2=15; w=-4; offset=-4; strand=D; shift=0; score=0.521902; bsGCCGAACTCGcss ; cor=; Ncor= a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 17 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 57 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 104 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26 18
oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5_rc; m=7/7; ncol2=13; w=-4; offset=-4; strand=R; shift=0; score=0.503907; ksgCCGAACTGsc-- ; cor=; Ncor= a 47 15 16 14 4 0 211 204 1 8 4 27 41 0 0 c 59 109 49 193 216 14 7 12 227 8 35 96 90 0 0 g 60 93 156 20 14 223 8 16 9 10 195 97 53 0 0 t 72 21 17 11 4 1 12 6 1 212 4 18 54 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=15; shift=0; ncol=15; bsGcCGAACTCGycs ; Alignment reference a 38 23 17 31 5 0 214 211 0 9 0 4 42 21 23 c 59 112 34 130 205 20 6 11 208 7 191 39 66 126 71 g 61 70 167 47 16 210 5 3 21 5 38 187 54 56 122 t 74 27 14 24 6 2 7 7 3 211 3 2 70 29 16
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; bsGcCGAACTCGycs ; cor=; Ncor= a 38 23 17 31 5 0 214 211 0 9 0 4 42 21 23 c 59 112 34 130 205 20 6 11 208 7 191 39 66 126 71 g 61 70 167 47 16 210 5 3 21 5 38 187 54 56 122 t 74 27 14 24 6 2 7 7 3 211 3 2 70 29 16
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=2/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.981388; bsGCCGAACTCGcss ; cor=; Ncor= a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 17 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 57 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 104 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26 18
oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2_rc; m=3/9; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.902615; ysGcCGAACTGGcss ; cor=; Ncor= a 49 17 22 31 6 1 222 215 1 11 3 11 40 16 22 c 65 118 39 162 211 18 6 16 230 15 40 41 129 139 74 g 61 89 173 40 22 229 10 12 15 8 203 190 45 75 128 t 73 24 14 15 9 0 10 5 2 214 2 6 34 18 24
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=4/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.801011; -ssgCCAACTCGbss ; cor=; Ncor= a 0 21 8 21 7 2 148 145 0 0 4 2 21 14 10 c 0 78 71 39 137 130 6 9 162 5 148 26 57 88 65 g 0 45 72 88 17 34 6 10 4 6 13 138 44 42 74 t 0 22 15 18 5 0 6 2 0 155 1 0 44 22 17
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=5/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.773786; -ssgCCAACTCGccs ; cor=; Ncor= a 0 16 9 17 7 2 129 108 0 2 2 2 11 10 6 c 0 64 53 21 118 110 5 13 133 1 124 17 87 76 51 g 0 41 61 85 9 25 3 14 5 8 8 119 26 32 67 t 0 17 15 15 4 1 1 3 0 127 4 0 14 20 14
oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5_rc; m=6/9; ncol2=13; w=0; offset=0; strand=R; shift=0; score=0.754433; ksgCCGAACTGsc-- ; cor=; Ncor= a 47 15 16 14 4 0 211 204 1 8 4 27 41 0 0 c 59 109 49 193 216 14 7 12 227 8 35 96 90 0 0 g 60 93 156 20 14 223 8 16 9 10 195 97 53 0 0 t 72 21 17 11 4 1 12 6 1 212 4 18 54 0 0
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3; m=7/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.709717; -ssgCCAACTGGccs ; cor=; Ncor= a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 10 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 58 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 65 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22 12
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=8/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.674414; -csgCCAACTCCcss ; cor=; Ncor= a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 17 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 81 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 63 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33 18
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5; m=9/9; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.650863; -ssgCCAACTCCss- ; cor=; Ncor= a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 0 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 0 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 0 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=15; shift=0; ncol=15; bsGCCGAACTCGcss ; Alignment reference a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 17 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 57 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 104 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26 18
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; bsGCCGAACTCGcss ; cor=; Ncor= a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 17 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 57 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 104 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26 18
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=2/10; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.981388; bsGcCGAACTCGycs ; cor=; Ncor= a 38 23 17 31 5 0 214 211 0 9 0 4 42 21 23 c 59 112 34 130 205 20 6 11 208 7 191 39 66 126 71 g 61 70 167 47 16 210 5 3 21 5 38 187 54 56 122 t 74 27 14 24 6 2 7 7 3 211 3 2 70 29 16
oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2_rc; m=3/10; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.924681; ysGcCGAACTGGcss ; cor=; Ncor= a 49 17 22 31 6 1 222 215 1 11 3 11 40 16 22 c 65 118 39 162 211 18 6 16 230 15 40 41 129 139 74 g 61 89 173 40 22 229 10 12 15 8 203 190 45 75 128 t 73 24 14 15 9 0 10 5 2 214 2 6 34 18 24
oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5_rc; m=4/10; ncol2=13; w=0; offset=0; strand=R; shift=0; score=0.776234; ksgCCGAACTGsc-- ; cor=; Ncor= a 47 15 16 14 4 0 211 204 1 8 4 27 41 0 0 c 59 109 49 193 216 14 7 12 227 8 35 96 90 0 0 g 60 93 156 20 14 223 8 16 9 10 195 97 53 0 0 t 72 21 17 11 4 1 12 6 1 212 4 18 54 0 0
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=5/10; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.764297; -ssgCCAACTCGbss ; cor=; Ncor= a 0 21 8 21 7 2 148 145 0 0 4 2 21 14 10 c 0 78 71 39 137 130 6 9 162 5 148 26 57 88 65 g 0 45 72 88 17 34 6 10 4 6 13 138 44 42 74 t 0 22 15 18 5 0 6 2 0 155 1 0 44 22 17
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=6/10; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.756594; -ssgCCAACTCGccs ; cor=; Ncor= a 0 16 9 17 7 2 129 108 0 2 2 2 11 10 6 c 0 64 53 21 118 110 5 13 133 1 124 17 87 76 51 g 0 41 61 85 9 25 3 14 5 8 8 119 26 32 67 t 0 17 15 15 4 1 1 3 0 127 4 0 14 20 14
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3; m=7/10; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.706636; -ssgCCAACTGGccs ; cor=; Ncor= a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 10 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 58 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 65 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22 12
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=8/10; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.670742; -csgCCAACTCCcss ; cor=; Ncor= a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 17 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 81 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 63 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33 18
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=9/10; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.633739; -ssgCCAACTCCss- ; cor=; Ncor= a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 0 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 0 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 0 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34 0
oligos_7nt_test_vs_ctrl_m4_shift4 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=10/10; ncol2=11; w=0; offset=4; strand=D; shift=4; score=0.521902; ----ssAACTGCCss ; cor=; Ncor= a 0 0 0 0 41 20 308 276 4 17 11 11 9 24 31 c 0 0 0 0 142 135 9 34 329 21 31 287 292 146 109 g 0 0 0 0 100 172 11 20 5 13 287 31 23 138 160 t 0 0 0 0 56 12 11 9 1 288 10 10 15 31 39

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=14; shift=1; ncol=15; -ssgCCAACTCGbss ; Alignment reference a 0 21 8 21 7 2 148 145 0 0 4 2 21 14 10 c 0 78 71 39 137 130 6 9 162 5 148 26 57 88 65 g 0 45 72 88 17 34 6 10 4 6 13 138 44 42 74 t 0 22 15 18 5 0 6 2 0 155 1 0 44 22 17
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -ssgCCAACTCGbss ; cor=; Ncor= a 0 21 8 21 7 2 148 145 0 0 4 2 21 14 10 c 0 78 71 39 137 130 6 9 162 5 148 26 57 88 65 g 0 45 72 88 17 34 6 10 4 6 13 138 44 42 74 t 0 22 15 18 5 0 6 2 0 155 1 0 44 22 17
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=2/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.984145; -ssgCCAACTCGccs ; cor=; Ncor= a 0 16 9 17 7 2 129 108 0 2 2 2 11 10 6 c 0 64 53 21 118 110 5 13 133 1 124 17 87 76 51 g 0 41 61 85 9 25 3 14 5 8 8 119 26 32 67 t 0 17 15 15 4 1 1 3 0 127 4 0 14 20 14
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=3/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 0.8863; -csgCCAACTCCcss ; cor=; Ncor= a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 17 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 81 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 63 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33 18
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3; m=4/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.873796; -ssgCCAACTGGccs ; cor=; Ncor= a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 10 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 58 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 65 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22 12
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=5/8; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.832305; -ssgCCAACTCCss- ; cor=; Ncor= a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 0 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 0 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 0 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34 0
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=6/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.801011; bsGcCGAACTCGycs ; cor=; Ncor= a 38 23 17 31 5 0 214 211 0 9 0 4 42 21 23 c 59 112 34 130 205 20 6 11 208 7 191 39 66 126 71 g 61 70 167 47 16 210 5 3 21 5 38 187 54 56 122 t 74 27 14 24 6 2 7 7 3 211 3 2 70 29 16
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=7/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.764297; bsGCCGAACTCGcss ; cor=; Ncor= a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 17 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 57 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 104 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26 18
oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2_rc; m=8/8; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.682466; ysGcCGAACTGGcss ; cor=; Ncor= a 49 17 22 31 6 1 222 215 1 11 3 11 40 16 22 c 65 118 39 162 211 18 6 16 230 15 40 41 129 139 74 g 61 89 173 40 22 229 10 12 15 8 203 190 45 75 128 t 73 24 14 15 9 0 10 5 2 214 2 6 34 18 24

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=14; shift=1; ncol=15; -csgCCAACTCCcss ; Alignment reference a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 17 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 81 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 63 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33 18
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -csgCCAACTCCcss ; cor=; Ncor= a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 17 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 81 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 63 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33 18
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5; m=2/8; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.918518; -ssgCCAACTCCss- ; cor=; Ncor= a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 0 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 0 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 0 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34 0
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1; m=3/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.887516; -ssgCCAACTCGccs ; cor=; Ncor= a 0 16 9 17 7 2 129 108 0 2 2 2 11 10 6 c 0 64 53 21 118 110 5 13 133 1 124 17 87 76 51 g 0 41 61 85 9 25 3 14 5 8 8 119 26 32 67 t 0 17 15 15 4 1 1 3 0 127 4 0 14 20 14
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=4/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 0.8863; -ssgCCAACTCGbss ; cor=; Ncor= a 0 21 8 21 7 2 148 145 0 0 4 2 21 14 10 c 0 78 71 39 137 130 6 9 162 5 148 26 57 88 65 g 0 45 72 88 17 34 6 10 4 6 13 138 44 42 74 t 0 22 15 18 5 0 6 2 0 155 1 0 44 22 17
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=5/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.784471; -ssgCCAACTGGccs ; cor=; Ncor= a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 10 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 58 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 65 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22 12
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4; m=6/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.674414; bsGcCGAACTCGycs ; cor=; Ncor= a 38 23 17 31 5 0 214 211 0 9 0 4 42 21 23 c 59 112 34 130 205 20 6 11 208 7 191 39 66 126 71 g 61 70 167 47 16 210 5 3 21 5 38 187 54 56 122 t 74 27 14 24 6 2 7 7 3 211 3 2 70 29 16
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2; m=7/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.670742; bsGCCGAACTCGcss ; cor=; Ncor= a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 17 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 57 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 104 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26 18
oligos_7nt_test_vs_ctrl_m4_shift4 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4; m=8/8; ncol2=11; w=0; offset=3; strand=D; shift=4; score=0.600473; ----ssAACTGCCss ; cor=; Ncor= a 0 0 0 0 41 20 308 276 4 17 11 11 9 24 31 c 0 0 0 0 142 135 9 34 329 21 31 287 292 146 109 g 0 0 0 0 100 172 11 20 5 13 287 31 23 138 160 t 0 0 0 0 56 12 11 9 1 288 10 10 15 31 39

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift2 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=13; shift=2; ncol=15; --gsCAGTTCGGcsm ; Alignment reference a 0 0 54 18 4 212 1 6 12 1 4 11 17 21 72 c 0 0 53 97 195 10 9 16 8 223 14 20 156 93 60 g 0 0 90 96 35 8 227 12 7 14 216 193 49 109 59 t 0 0 41 27 4 8 1 204 211 0 4 14 16 15 47
oligos_7nt_test_vs_ctrl_m5_shift2 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/6; ncol2=13; w=0; offset=0; strand=D; shift=2; score= 1; --gsCAGTTCGGcsm ; cor=; Ncor= a 0 0 54 18 4 212 1 6 12 1 4 11 17 21 72 c 0 0 53 97 195 10 9 16 8 223 14 20 156 93 60 g 0 0 90 96 35 8 227 12 7 14 216 193 49 109 59 t 0 0 41 27 4 8 1 204 211 0 4 14 16 15 47
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2; m=2/6; ncol2=15; w=-2; offset=-2; strand=D; shift=0; score=0.841941; ssgCCAGTTCGgCsr ; cor=; Ncor= a 24 18 34 6 2 214 2 5 10 0 9 15 14 24 73 c 128 75 45 190 203 8 15 12 10 229 22 40 173 89 61 g 74 139 129 41 40 15 230 16 6 18 211 162 39 118 65 t 22 16 40 11 3 11 1 215 222 1 6 31 22 17 49
oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2_rc; m=3/6; ncol2=15; w=-2; offset=-2; strand=R; shift=0; score=0.776234; ssgCGAGTTCGGCsv ; cor=; Ncor= a 18 26 25 4 0 169 0 3 9 0 5 15 16 23 58 c 104 49 32 142 42 11 20 4 4 185 9 23 142 59 54 g 57 108 117 38 151 11 175 6 6 11 180 137 23 99 49 t 17 13 22 12 3 5 1 183 177 0 2 21 15 15 35
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4_rc; m=4/6; ncol2=15; w=-2; offset=-2; strand=R; shift=0; score=0.754433; sgrCGAGTTCGgCsv ; cor=; Ncor= a 16 29 70 2 3 211 3 7 7 2 6 24 14 27 74 c 122 56 54 187 38 5 21 3 5 210 16 47 167 70 61 g 71 126 66 39 191 7 208 11 6 20 205 130 34 112 59 t 23 21 42 4 0 9 0 211 214 0 5 31 17 23 38
oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3_rc; m=5/6; ncol2=14; w=-2; offset=-2; strand=R; shift=0; score=0.631249; sggCCAGTTGGcss- ; cor=; Ncor= a 12 22 20 2 4 132 0 4 2 1 5 13 16 17 0 c 65 35 30 117 117 4 6 9 9 31 8 81 65 48 0 g 58 70 81 25 19 5 139 11 3 111 127 33 55 61 0 t 10 18 14 1 5 4 0 121 131 2 5 18 9 19 0
oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4_rc; m=6/6; ncol2=11; w=-2; offset=-2; strand=R; shift=0; score=0.503907; ssGGCAGTTss---- ; cor=; Ncor= a 39 31 15 10 10 288 1 9 11 12 56 0 0 0 0 c 160 138 23 31 287 13 5 20 11 172 100 0 0 0 0 g 109 146 292 287 31 21 329 34 9 135 142 0 0 0 0 t 31 24 9 11 11 17 4 276 308 20 41 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=15; shift=0; ncol=15; ssgCCAGTTCGgCsr ; Alignment reference a 24 18 34 6 2 214 2 5 10 0 9 15 14 24 73 c 128 75 45 190 203 8 15 12 10 229 22 40 173 89 61 g 74 139 129 41 40 15 230 16 6 18 211 162 39 118 65 t 22 16 40 11 3 11 1 215 222 1 6 31 22 17 49
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/8; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; ssgCCAGTTCGgCsr ; cor=; Ncor= a 24 18 34 6 2 214 2 5 10 0 9 15 14 24 73 c 128 75 45 190 203 8 15 12 10 229 22 40 173 89 61 g 74 139 129 41 40 15 230 16 6 18 211 162 39 118 65 t 22 16 40 11 3 11 1 215 222 1 6 31 22 17 49
oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2_rc; m=2/8; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.924681; ssgCGAGTTCGGCsv ; cor=; Ncor= a 18 26 25 4 0 169 0 3 9 0 5 15 16 23 58 c 104 49 32 142 42 11 20 4 4 185 9 23 142 59 54 g 57 108 117 38 151 11 175 6 6 11 180 137 23 99 49 t 17 13 22 12 3 5 1 183 177 0 2 21 15 15 35
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4_rc; m=3/8; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.902615; sgrCGAGTTCGgCsv ; cor=; Ncor= a 16 29 70 2 3 211 3 7 7 2 6 24 14 27 74 c 122 56 54 187 38 5 21 3 5 210 16 47 167 70 61 g 71 126 66 39 191 7 208 11 6 20 205 130 34 112 59 t 23 21 42 4 0 9 0 211 214 0 5 31 17 23 38
oligos_7nt_test_vs_ctrl_m5_shift2 (oligos_7nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5; m=4/8; ncol2=13; w=0; offset=2; strand=D; shift=2; score=0.841941; --gsCAGTTCGGcsm ; cor=; Ncor= a 0 0 54 18 4 212 1 6 12 1 4 11 17 21 72 c 0 0 53 97 195 10 9 16 8 223 14 20 156 93 60 g 0 0 90 96 35 8 227 12 7 14 216 193 49 109 59 t 0 0 41 27 4 8 1 204 211 0 4 14 16 15 47
oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3_rc; m=5/8; ncol2=14; w=0; offset=0; strand=R; shift=0; score=0.790424; sggCCAGTTGGcss- ; cor=; Ncor= a 12 22 20 2 4 132 0 4 2 1 5 13 16 17 0 c 65 35 30 117 117 4 6 9 9 31 8 81 65 48 0 g 58 70 81 25 19 5 139 11 3 111 127 33 55 61 0 t 10 18 14 1 5 4 0 121 131 2 5 18 9 19 0
oligos_6nt_test_vs_ctrl_m1_rc_shift0 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1_rc; m=6/8; ncol2=14; w=0; offset=0; strand=R; shift=0; score=0.682466; ssvCGAGTTGGcss- ; cor=; Ncor= a 17 22 44 0 1 155 0 2 6 0 5 18 15 22 0 c 74 42 44 138 13 6 4 10 6 34 17 88 72 45 0 g 65 88 57 26 148 5 162 9 6 130 137 39 71 78 0 t 10 14 21 2 4 0 0 145 148 2 7 21 8 21 0
oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1_rc; m=7/8; ncol2=14; w=0; offset=0; strand=R; shift=0; score=0.671173; sggCGAGTTGGcss- ; cor=; Ncor= a 14 20 14 0 4 127 0 3 1 1 4 15 15 17 0 c 67 32 26 119 8 8 5 14 3 25 9 85 61 41 0 g 51 76 87 17 124 1 133 13 5 110 118 21 53 64 0 t 6 10 11 2 2 2 0 108 129 2 7 17 9 16 0
oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4_rc; m=8/8; ncol2=11; w=0; offset=0; strand=R; shift=0; score=0.591358; ssGGCAGTTss---- ; cor=; Ncor= a 39 31 15 10 10 288 1 9 11 12 56 0 0 0 0 c 160 138 23 31 287 13 5 20 11 172 100 0 0 0 0 g 109 146 292 287 31 21 329 34 9 135 142 0 0 0 0 t 31 24 9 11 11 17 4 276 308 20 41 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=14; shift=1; ncol=15; -ssgCCAACTCGccs ; Alignment reference a 0 16 9 17 7 2 129 108 0 2 2 2 11 10 6 c 0 64 53 21 118 110 5 13 133 1 124 17 87 76 51 g 0 41 61 85 9 25 3 14 5 8 8 119 26 32 67 t 0 17 15 15 4 1 1 3 0 127 4 0 14 20 14
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -ssgCCAACTCGccs ; cor=; Ncor= a 0 16 9 17 7 2 129 108 0 2 2 2 11 10 6 c 0 64 53 21 118 110 5 13 133 1 124 17 87 76 51 g 0 41 61 85 9 25 3 14 5 8 8 119 26 32 67 t 0 17 15 15 4 1 1 3 0 127 4 0 14 20 14
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=2/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.984145; -ssgCCAACTCGbss ; cor=; Ncor= a 0 21 8 21 7 2 148 145 0 0 4 2 21 14 10 c 0 78 71 39 137 130 6 9 162 5 148 26 57 88 65 g 0 45 72 88 17 34 6 10 4 6 13 138 44 42 74 t 0 22 15 18 5 0 6 2 0 155 1 0 44 22 17
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=3/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.887516; -csgCCAACTCCcss ; cor=; Ncor= a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 17 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 81 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 63 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33 18
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3; m=4/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.878336; -ssgCCAACTGGccs ; cor=; Ncor= a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 10 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 58 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 65 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22 12
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=5/8; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.816149; -ssgCCAACTCCss- ; cor=; Ncor= a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 0 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 0 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 0 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34 0
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=6/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.773786; bsGcCGAACTCGycs ; cor=; Ncor= a 38 23 17 31 5 0 214 211 0 9 0 4 42 21 23 c 59 112 34 130 205 20 6 11 208 7 191 39 66 126 71 g 61 70 167 47 16 210 5 3 21 5 38 187 54 56 122 t 74 27 14 24 6 2 7 7 3 211 3 2 70 29 16
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=7/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.756594; bsGCCGAACTCGcss ; cor=; Ncor= a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 17 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 57 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 104 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26 18
oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2_rc; m=8/8; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.671173; ysGcCGAACTGGcss ; cor=; Ncor= a 49 17 22 31 6 1 222 215 1 11 3 11 40 16 22 c 65 118 39 162 211 18 6 16 230 15 40 41 129 139 74 g 61 89 173 40 22 229 10 12 15 8 203 190 45 75 128 t 73 24 14 15 9 0 10 5 2 214 2 6 34 18 24

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=14; shift=1; ncol=15; -ssgCCAACTGGccs ; Alignment reference a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 10 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 58 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 65 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22 12
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -ssgCCAACTGGccs ; cor=; Ncor= a 0 19 9 18 5 2 131 121 0 4 5 1 14 18 10 c 0 61 55 33 127 111 3 11 139 5 19 25 81 70 58 g 0 48 65 81 8 31 9 9 6 4 117 117 30 35 65 t 0 17 16 13 5 1 2 4 0 132 4 2 20 22 12
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1; m=2/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.878336; -ssgCCAACTCGccs ; cor=; Ncor= a 0 16 9 17 7 2 129 108 0 2 2 2 11 10 6 c 0 64 53 21 118 110 5 13 133 1 124 17 87 76 51 g 0 41 61 85 9 25 3 14 5 8 8 119 26 32 67 t 0 17 15 15 4 1 1 3 0 127 4 0 14 20 14
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=3/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.873796; -ssgCCAACTCGbss ; cor=; Ncor= a 0 21 8 21 7 2 148 145 0 0 4 2 21 14 10 c 0 78 71 39 137 130 6 9 162 5 148 26 57 88 65 g 0 45 72 88 17 34 6 10 4 6 13 138 44 42 74 t 0 22 15 18 5 0 6 2 0 155 1 0 44 22 17
oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2_rc; m=4/10; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.790424; ysGcCGAACTGGcss ; cor=; Ncor= a 49 17 22 31 6 1 222 215 1 11 3 11 40 16 22 c 65 118 39 162 211 18 6 16 230 15 40 41 129 139 74 g 61 89 173 40 22 229 10 12 15 8 203 190 45 75 128 t 73 24 14 15 9 0 10 5 2 214 2 6 34 18 24
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=5/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.784471; -csgCCAACTCCcss ; cor=; Ncor= a 0 24 11 18 9 1 158 153 3 8 9 3 21 16 17 c 0 76 77 32 154 150 7 14 163 0 154 149 103 77 81 g 0 42 78 109 10 27 6 7 13 18 12 27 38 53 63 t 0 37 13 20 6 1 8 5 0 153 4 0 17 33 18
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5; m=6/10; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.72018; -ssgCCAACTCCss- ; cor=; Ncor= a 0 21 11 22 10 1 174 164 1 7 7 5 33 16 0 c 0 83 72 45 152 158 4 11 180 0 165 157 69 89 0 g 0 54 90 98 17 30 5 11 9 11 13 27 56 51 0 t 0 32 17 25 11 1 7 4 0 172 5 1 32 34 0
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4; m=7/10; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.709717; bsGcCGAACTCGycs ; cor=; Ncor= a 38 23 17 31 5 0 214 211 0 9 0 4 42 21 23 c 59 112 34 130 205 20 6 11 208 7 191 39 66 126 71 g 61 70 167 47 16 210 5 3 21 5 38 187 54 56 122 t 74 27 14 24 6 2 7 7 3 211 3 2 70 29 16
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2; m=8/10; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.706636; bsGCCGAACTCGcss ; cor=; Ncor= a 35 15 15 21 2 0 177 183 1 5 3 12 22 13 17 c 49 99 23 137 180 11 6 6 175 11 151 38 117 108 57 g 54 59 142 23 9 185 4 4 20 11 42 142 32 49 104 t 58 23 16 15 5 0 9 3 0 169 0 4 25 26 18
oligos_7nt_test_vs_ctrl_m4_shift4 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4; m=9/10; ncol2=11; w=0; offset=3; strand=D; shift=4; score=0.631258; ----ssAACTGCCss ; cor=; Ncor= a 0 0 0 0 41 20 308 276 4 17 11 11 9 24 31 c 0 0 0 0 142 135 9 34 329 21 31 287 292 146 109 g 0 0 0 0 100 172 11 20 5 13 287 31 23 138 160 t 0 0 0 0 56 12 11 9 1 288 10 10 15 31 39
oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m5_rc; m=10/10; ncol2=13; w=-1; offset=-1; strand=R; shift=0; score=0.631249; ksgCCGAACTGsc-- ; cor=; Ncor= a 47 15 16 14 4 0 211 204 1 8 4 27 41 0 0 c 59 109 49 193 216 14 7 12 227 8 35 96 90 0 0 g 60 93 156 20 14 223 8 16 9 10 195 97 53 0 0 t 72 21 17 11 4 1 12 6 1 212 4 18 54 0 0