position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084501_2026-01-22.084501_yybHyF/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title WT48h_sup3 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084501_2026-01-22.084501_yybHyF/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084501_2026-01-22.084501_yybHyF/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084501_2026-01-22.084501_yybHyF/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 493 Sum of sequence lengths 308249 Min sequence length 0 Max sequence length 1000 Average sequence length 625 Possible positions 308249 Oligonucleotide statistics: Total occurrences 303631 Position interval parameters: Position interval 20 Number of windows 50 Total positions 308249 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 75 1410 2 -24 [-479,-460] -469.5 84 1549 3 -23 [-459,-440] -449.5 96 1802 4 -22 [-439,-420] -429.5 109 2018 5 -21 [-419,-400] -409.5 119 2277 6 -20 [-399,-380] -389.5 139 2605 7 -19 [-379,-360] -369.5 165 3049 8 -18 [-359,-340] -349.5 179 3447 9 -17 [-339,-320] -329.5 205 3837 10 -16 [-319,-300] -309.5 233 4406 11 -15 [-299,-280] -289.5 262 5015 12 -14 [-279,-260] -269.5 297 5582 13 -13 [-259,-240] -249.5 330 6229 14 -12 [-239,-220] -229.5 368 7022 15 -11 [-219,-200] -209.5 397 7712 16 -10 [-199,-180] -189.5 442 8468 17 -9 [-179,-160] -169.5 475 9188 18 -8 [-159,-140] -149.5 490 9703 19 -7 [-139,-120] -129.5 493 9845 20 -6 [-119,-100] -109.5 493 9860 21 -5 [-99,-80] -89.5 493 9860 22 -4 [-79,-60] -69.5 493 9860 23 -3 [-59,-40] -49.5 493 9860 24 -2 [-39,-20] -29.5 493 9860 25 -1 [-19,0] -9.5 493 9860 26 0 [1,20] 10.5 493 9860 27 1 [21,40] 30.5 493 9860 28 2 [41,60] 50.5 493 9860 29 3 [61,80] 70.5 493 9860 30 4 [81,100] 90.5 493 9860 31 5 [101,120] 110.5 493 9860 32 6 [121,140] 130.5 493 9843 33 7 [141,160] 150.5 490 9689 34 8 [161,180] 170.5 472 9153 35 9 [181,200] 190.5 442 8431 36 10 [201,220] 210.5 397 7683 37 11 [221,240] 230.5 366 6990 38 12 [241,260] 250.5 329 6199 39 13 [261,280] 270.5 294 5550 40 14 [281,300] 290.5 261 4988 41 15 [301,320] 310.5 233 4379 42 16 [321,340] 330.5 204 3810 43 17 [341,360] 350.5 179 3437 44 18 [361,380] 370.5 165 3022 45 19 [381,400] 390.5 137 2583 46 20 [401,420] 410.5 119 2268 47 21 [421,440] 430.5 108 2008 48 22 [441,460] 450.5 96 1785 49 23 [461,480] 470.5 82 1542 50 24 [481,500] 490.5 75 1405 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 43677 | 54.6 | 49 | 2.7e-01 | 1.1 | -0.03 | 1 | 185 | 230 | 253 | 293 | 338 | 398 | 447 | 490 | 545 | 584 | 725 | 811 | 876 | 970 | 1084 | 1195 | 1259 | 1373 | 1358 | 1425 | 1394 | 1462 | 1434 | 1464 | 1395 | 1409 | 1436 | 1354 | 1389 | 1379 | 1384 | 1427 | 1382 | 1211 | 1107 | 1038 | 995 | 899 | 787 | 656 | 611 | 566 | 537 | 437 | 370 | 326 | 268 | 264 | 231 | 226 |
| t | t | 43569 | 53.5 | 49 | 3.1e-01 | 1.2 | -0.09 | 2 | 214 | 243 | 258 | 292 | 307 | 344 | 423 | 490 | 584 | 639 | 639 | 778 | 909 | 993 | 1104 | 1168 | 1247 | 1350 | 1374 | 1397 | 1375 | 1367 | 1391 | 1438 | 1494 | 1392 | 1365 | 1413 | 1461 | 1393 | 1392 | 1375 | 1374 | 1311 | 1181 | 1104 | 928 | 858 | 776 | 744 | 633 | 538 | 453 | 392 | 373 | 343 | 285 | 226 | 234 | 207 |
| g | g | 107859 | 44.7 | 49 | 6.5e-01 | 2.6 | -0.41 | 3 | 495 | 528 | 651 | 723 | 830 | 874 | 1102 | 1192 | 1319 | 1540 | 1811 | 1948 | 2087 | 2484 | 2781 | 2953 | 3202 | 3367 | 3428 | 3381 | 3420 | 3404 | 3401 | 3386 | 3361 | 3381 | 3452 | 3414 | 3399 | 3460 | 3434 | 3435 | 3373 | 3280 | 2996 | 2698 | 2524 | 2209 | 1997 | 1825 | 1557 | 1379 | 1196 | 1110 | 920 | 789 | 746 | 626 | 526 | 465 |
| c | c | 108526 | 42.8 | 49 | 7.2e-01 | 2.9 | -0.46 | 4 | 510 | 522 | 600 | 687 | 794 | 969 | 1037 | 1235 | 1340 | 1555 | 1740 | 1935 | 2233 | 2453 | 2600 | 3012 | 3312 | 3433 | 3485 | 3457 | 3479 | 3447 | 3454 | 3385 | 3410 | 3478 | 3416 | 3469 | 3394 | 3438 | 3459 | 3425 | 3383 | 3241 | 3102 | 2807 | 2527 | 2202 | 1959 | 1743 | 1572 | 1327 | 1251 | 1083 | 920 | 810 | 709 | 669 | 551 | 507 |
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