/var/www/html/rsat/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084501_2026-01-22.084501_yybHyF/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084501_2026-01-22.084501_yybHyF/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title WT48h_sup3 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084501_2026-01-22.084501_yybHyF/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084501_2026-01-22.084501_yybHyF/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084501_2026-01-22.084501_yybHyF/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	493
	Sum of sequence lengths      	308249
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	625
	Possible positions           	307756
 Oligonucleotide statistics:
	Total occurrences    	303121
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	307756
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	75	1410
	2	-24	[-479,-460]	-469.5	84	1549
	3	-23	[-459,-440]	-449.5	96	1802
	4	-22	[-439,-420]	-429.5	109	2018
	5	-21	[-419,-400]	-409.5	119	2277
	6	-20	[-399,-380]	-389.5	139	2605
	7	-19	[-379,-360]	-369.5	165	3049
	8	-18	[-359,-340]	-349.5	179	3447
	9	-17	[-339,-320]	-329.5	205	3837
	10	-16	[-319,-300]	-309.5	233	4406
	11	-15	[-299,-280]	-289.5	262	5015
	12	-14	[-279,-260]	-269.5	297	5582
	13	-13	[-259,-240]	-249.5	330	6229
	14	-12	[-239,-220]	-229.5	368	7022
	15	-11	[-219,-200]	-209.5	397	7712
	16	-10	[-199,-180]	-189.5	442	8468
	17	-9	[-179,-160]	-169.5	475	9188
	18	-8	[-159,-140]	-149.5	490	9703
	19	-7	[-139,-120]	-129.5	493	9845
	20	-6	[-119,-100]	-109.5	493	9860
	21	-5	[-99,-80]	-89.5	493	9860
	22	-4	[-79,-60]	-69.5	493	9860
	23	-3	[-59,-40]	-49.5	493	9860
	24	-2	[-39,-20]	-29.5	493	9860
	25	-1	[-19,0]	-9.5	493	9860
	26	0	[1,20]	10.5	493	9860
	27	1	[21,40]	30.5	493	9860
	28	2	[41,60]	50.5	493	9860
	29	3	[61,80]	70.5	493	9860
	30	4	[81,100]	90.5	493	9860
	31	5	[101,120]	110.5	493	9860
	32	6	[121,140]	130.5	493	9840
	33	7	[141,160]	150.5	490	9671
	34	8	[161,180]	170.5	471	9123
	35	9	[181,200]	190.5	441	8386
	36	10	[201,220]	210.5	397	7652
	37	11	[221,240]	230.5	365	6953
	38	12	[241,260]	250.5	328	6164
	39	13	[261,280]	270.5	293	5517
	40	14	[281,300]	290.5	260	4960
	41	15	[301,320]	310.5	233	4350
	42	16	[321,340]	330.5	204	3785
	43	17	[341,360]	350.5	178	3423
	44	18	[361,380]	370.5	165	2994
	45	19	[381,400]	390.5	136	2565
	46	20	[401,420]	410.5	119	2257
	47	21	[421,440]	430.5	108	1996
	48	22	[441,460]	450.5	96	1771
	49	23	[461,480]	470.5	81	1535
	50	24	[481,500]	490.5	75	1330

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 5198 119.0 49 9.5e-08 1.5e-06 5.82 1 27 29 27 34 37 36 52 60 60 81 60 88 112 123 145 124 135 153 153 180 158 187 186 187 202 213 191 192 204 203 147 153 157 134 124 128 100 76 75 77 69 48 47 37 55 47 27 19 19 20
aa aa 5238 91.3 49 2.3e-04 0.0037 2.43 2 25 28 33 41 37 47 66 57 60 52 79 104 105 109 132 124 131 144 170 183 174 195 218 198 192 191 191 156 180 142 163 187 154 132 127 107 114 102 93 68 65 69 64 53 46 34 21 26 27 22
at at 5578 72.0 49 1.8e-02 0.28 0.55 3 24 36 43 44 53 43 52 52 90 91 85 103 103 121 144 163 176 182 162 187 183 185 174 197 190 160 141 181 183 191 191 220 159 155 142 128 86 107 106 88 69 66 57 53 43 40 42 29 27 31
ct ct 15000 63.2 49 8.3e-02 1.3 -0.12 4 74 67 67 100 89 129 126 156 203 219 202 258 340 358 360 413 444 464 496 473 496 466 465 468 506 488 449 478 489 466 469 465 485 451 430 400 335 298 262 258 250 205 158 135 135 119 94 76 80 86
gg gg 33398 62.0 49 1.0e-01 1.6 -0.21 5 140 162 210 218 267 244 362 343 412 480 563 590 664 802 927 913 1019 1033 1064 1031 1043 1060 1089 1033 1014 1026 1081 1049 1048 1090 1061 1091 1015 1059 918 846 778 687 621 577 463 423 341 348 287 232 221 180 152 121
tc tc 19408 55.9 49 2.3e-01 3.7 -0.57 6 88 105 113 114 138 163 189 229 270 284 263 342 421 456 469 543 569 615 612 658 615 587 618 637 647 566 581 597 641 609 626 620 620 616 551 504 431 402 362 346 270 237 196 168 151 165 130 92 96 86
cc cc 33610 54.8 49 2.6e-01 4.2 -0.63 7 154 163 183 214 233 304 316 389 410 483 556 595 707 740 792 933 1076 1073 1101 1098 1121 1076 1089 1052 1022 1138 1047 1066 1048 1053 1074 1076 1009 1003 982 924 759 655 583 501 470 383 373 332 274 247 211 218 164 140
ac ac 18231 54.4 49 2.8e-01 4.4 -0.65 8 69 89 99 109 129 164 181 208 229 236 292 347 378 402 426 506 537 581 592 578 548 609 589 573 587 588 612 560 575 576 585 552 598 522 463 454 432 393 342 275 255 229 249 191 145 141 105 126 105 100
ca ca 15875 52.7 49 3.3e-01 5.3 -0.73 9 82 91 86 103 137 154 164 184 198 226 257 293 345 354 397 466 467 512 472 466 488 535 517 529 487 496 527 514 492 512 510 498 495 435 415 363 380 337 276 223 233 186 197 149 144 117 87 107 90 82
gc gc 37085 50.8 49 4.0e-01 6.5 -0.81 10 191 162 212 248 305 310 359 418 432 530 640 664 718 843 908 1048 1130 1178 1159 1125 1200 1187 1136 1138 1154 1201 1158 1218 1142 1203 1193 1148 1160 1101 1082 924 886 736 667 595 569 476 426 392 332 264 256 222 184 155
ta ta 3042 46.2 49 5.9e-01 9.4 -0.97 11 15 15 16 19 21 27 29 26 34 51 49 60 60 56 94 79 81 97 102 108 100 94 93 103 122 91 87 109 97 92 98 98 100 85 73 78 57 69 40 41 47 47 32 31 23 16 21 17 24 18
gt gt 17716 44.3 49 6.6e-01 11 -1.02 12 92 107 119 118 124 144 192 211 225 267 277 329 348 390 466 473 476 548 578 559 535 531 572 583 589 531 589 559 585 539 568 557 573 547 488 437 408 368 327 318 245 217 187 160 136 135 125 99 101 64
cg cg 43881 41.6 49 7.6e-01 12 -1.09 13 200 201 264 270 335 382 431 506 529 626 725 788 841 1001 1051 1200 1325 1383 1416 1420 1374 1370 1383 1336 1395 1356 1392 1411 1365 1407 1405 1384 1386 1342 1260 1102 1047 901 827 755 611 546 517 459 358 324 313 266 216 179
ag ag 14549 39.9 49 8.2e-01 13 -1.12 14 67 77 78 99 118 143 148 173 166 205 269 257 290 338 382 402 414 466 434 477 489 473 453 496 426 470 491 457 451 470 445 468 465 396 368 349 352 296 243 219 218 197 165 137 131 110 99 79 70 63
tg tg 15853 36.0 49 9.2e-01 15 -1.17 15 84 93 102 125 111 118 153 175 219 223 267 288 316 357 396 422 461 485 507 451 502 499 494 510 523 522 506 514 519 489 521 504 496 473 425 391 336 306 294 279 245 201 177 151 142 113 107 97 95 69
ga ga 19459 33.0 49 9.6e-01 15 -1.19 16 71 97 110 139 134 176 189 220 250 263 331 364 357 449 480 519 577 608 627 666 642 626 604 632 604 623 624 588 624 628 612 638 622 562 494 481 435 399 368 320 266 255 237 198 163 153 137 118 85 94 
 Host name	rsat
 Job started	2026-01-22.084507
 Job done	2026-01-22.084509
 Seconds	2.19
	user	2.19
	system	0.02
	cuser	0
;	csystem	0