One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084501_2026-01-22.084501_yybHyF/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.084501_2026-01-22.084501_yybHyF/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift0 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=15; shift=0; ncol=15; gsstCCAACTGCCss ; Alignment reference a 73 49 29 44 10 5 315 285 1 10 19 14 15 37 25 c 85 129 123 63 292 288 15 32 337 9 55 266 250 152 126 g 113 118 168 73 35 56 14 24 11 17 256 56 45 124 143 t 79 54 30 170 13 1 6 9 1 314 20 14 40 37 56

oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/8; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; gsstCCAACTGCCss ; cor=; Ncor= a 73 49 29 44 10 5 315 285 1 10 19 14 15 37 25 c 85 129 123 63 292 288 15 32 337 9 55 266 250 152 126 g 113 118 168 73 35 56 14 24 11 17 256 56 45 124 143 t 79 54 30 170 13 1 6 9 1 314 20 14 40 37 56

oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=2/8; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.894308; ssstCCAACTCCcss ; cor=; Ncor= a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57

oligos_7nt_test_vs_ctrl_m4_shift1 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4; m=3/8; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.807043; -ssGCCAACTGCCGs ; cor=; Ncor= a 0 41 27 14 11 3 209 189 3 10 16 3 7 16 21 c 0 100 103 26 201 196 12 28 220 13 26 217 206 45 97 g 0 73 101 186 21 40 17 22 16 15 190 21 18 168 90 t 0 30 13 18 11 5 6 5 5 206 12 3 13 15 36

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4_rc; m=4/8; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.806231; ssskgCAACTCCcss ; cor=; Ncor= a 83 55 49 73 22 5 363 356 1 9 15 11 39 52 28 c 111 165 194 100 72 340 19 16 384 3 328 351 230 148 149 g 127 119 134 111 268 48 15 20 9 23 42 36 73 140 170 t 81 63 25 118 40 9 5 10 8 367 17 4 60 62 55

oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5; m=5/8; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.783504; ssstCCAACTCGbcs ; cor=; Ncor= a 111 58 23 67 18 5 461 377 0 8 4 12 64 41 27 c 134 209 172 117 418 379 19 49 482 13 444 84 168 278 169 g 145 152 260 115 38 111 11 57 12 10 42 394 135 120 231 t 106 77 41 197 22 1 5 13 2 465 6 6 129 57 69

oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2; m=6/8; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.753045; -ssGCCAACTCCCgs ; cor=; Ncor= a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2; m=7/8; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.711298; -sscCGAACTCCcss ; cor=; Ncor= a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=8/8; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.661488; -sscCGAACTCCCss ; cor=; Ncor= a 0 38 34 29 8 2 310 311 3 6 7 7 25 22 22 c 0 143 133 232 291 38 9 17 320 17 290 300 252 93 120 g 0 118 161 56 36 306 12 14 20 17 42 37 39 213 156 t 0 51 22 33 15 4 19 8 7 310 11 6 34 22 52

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift0 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=15; shift=0; ncol=15; ssstCCAACTCGbcs ; Alignment reference a 111 58 23 67 18 5 461 377 0 8 4 12 64 41 27 c 134 209 172 117 418 379 19 49 482 13 444 84 168 278 169 g 145 152 260 115 38 111 11 57 12 10 42 394 135 120 231 t 106 77 41 197 22 1 5 13 2 465 6 6 129 57 69

oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; ssstCCAACTCGbcs ; cor=; Ncor= a 111 58 23 67 18 5 461 377 0 8 4 12 64 41 27 c 134 209 172 117 418 379 19 49 482 13 444 84 168 278 169 g 145 152 260 115 38 111 11 57 12 10 42 394 135 120 231 t 106 77 41 197 22 1 5 13 2 465 6 6 129 57 69

oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=2/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.883553; ssstCCAACTCCcss ; cor=; Ncor= a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57

oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1; m=3/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.874835; -ssGCCAACTCGtcs ; cor=; Ncor= a 0 47 18 25 3 4 304 255 0 5 6 5 30 40 21 c 0 143 157 37 300 269 14 39 321 7 303 53 56 178 132 g 0 102 144 261 25 68 16 35 18 24 30 280 61 79 154 t 0 51 24 20 15 2 9 14 4 307 4 5 196 46 36

oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3; m=4/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.783504; gsstCCAACTGCCss ; cor=; Ncor= a 73 49 29 44 10 5 315 285 1 10 19 14 15 37 25 c 85 129 123 63 292 288 15 32 337 9 55 266 250 152 126 g 113 118 168 73 35 56 14 24 11 17 256 56 45 124 143 t 79 54 30 170 13 1 6 9 1 314 20 14 40 37 56

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4_rc; m=5/9; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.77586; ssskgCAACTCCcss ; cor=; Ncor= a 83 55 49 73 22 5 363 356 1 9 15 11 39 52 28 c 111 165 194 100 72 340 19 16 384 3 328 351 230 148 149 g 127 119 134 111 268 48 15 20 9 23 42 36 73 140 170 t 81 63 25 118 40 9 5 10 8 367 17 4 60 62 55

oligos_7nt_test_vs_ctrl_m5_rc_shift1 (oligos_7nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5_rc; m=6/9; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.76935; -ssaGCAaCTCGtcs ; cor=; Ncor= a 0 42 28 265 14 9 351 258 4 4 1 10 31 50 20 c 0 181 192 46 58 327 21 63 362 16 339 43 61 210 150 g 0 121 163 53 309 55 14 55 25 20 45 340 75 89 188 t 0 51 12 31 14 4 9 19 4 355 10 2 228 46 37

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2; m=7/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.737557; -sscCGAACTCCcss ; cor=; Ncor= a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66

oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2; m=8/9; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.699765; -ssGCCAACTCCCgs ; cor=; Ncor= a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3; m=9/9; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.646535; -sscCGAACTCCCss ; cor=; Ncor= a 0 38 34 29 8 2 310 311 3 6 7 7 25 22 22 c 0 143 133 232 291 38 9 17 320 17 290 300 252 93 120 g 0 118 161 56 36 306 12 14 20 17 42 37 39 213 156 t 0 51 22 33 15 4 19 8 7 310 11 6 34 22 52

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift1 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=15; shift=1; ncol=16; -sscCGAACTCCCsss ; Alignment reference a 0 38 34 29 8 2 310 311 3 6 7 7 25 22 22 83 c 0 143 133 232 291 38 9 17 320 17 290 300 252 93 120 101 g 0 118 161 56 36 306 12 14 20 17 42 37 39 213 156 96 t 0 51 22 33 15 4 19 8 7 310 11 6 34 22 52 70

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/8; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -sscCGAACTCCCsss ; cor=; Ncor= a 0 38 34 29 8 2 310 311 3 6 7 7 25 22 22 83 c 0 143 133 232 291 38 9 17 320 17 290 300 252 93 120 101 g 0 118 161 56 36 306 12 14 20 17 42 37 39 213 156 96 t 0 51 22 33 15 4 19 8 7 310 11 6 34 22 52 70

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2; m=2/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.91502; -sscCGAACTCCcss- ; cor=; Ncor= a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 0 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 0 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 0 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66 0

oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2; m=3/8; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.839037; -ssGCCAACTCCCgss ; cor=; Ncor= a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 66 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 78 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 97 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60 54

oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=4/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.745099; ssstCCAACTCCcss- ; cor=; Ncor= a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 0 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 0 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 0 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57 0

oligos_7nt_test_vs_ctrl_m4_shift1 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4; m=5/8; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.734185; -ssGCCAACTGCCGss ; cor=; Ncor= a 0 41 27 14 11 3 209 189 3 10 16 3 7 16 21 54 c 0 100 103 26 201 196 12 28 220 13 26 217 206 45 97 62 g 0 73 101 186 21 40 17 22 16 15 190 21 18 168 90 83 t 0 30 13 18 11 5 6 5 5 206 12 3 13 15 36 45

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4_rc; m=6/8; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.671261; ssskgCAACTCCcss- ; cor=; Ncor= a 83 55 49 73 22 5 363 356 1 9 15 11 39 52 28 0 c 111 165 194 100 72 340 19 16 384 3 328 351 230 148 149 0 g 127 119 134 111 268 48 15 20 9 23 42 36 73 140 170 0 t 81 63 25 118 40 9 5 10 8 367 17 4 60 62 55 0

oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=7/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.661488; gsstCCAACTGCCss- ; cor=; Ncor= a 73 49 29 44 10 5 315 285 1 10 19 14 15 37 25 0 c 85 129 123 63 292 288 15 32 337 9 55 266 250 152 126 0 g 113 118 168 73 35 56 14 24 11 17 256 56 45 124 143 0 t 79 54 30 170 13 1 6 9 1 314 20 14 40 37 56 0

oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5; m=8/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.646535; ssstCCAACTCGbcs- ; cor=; Ncor= a 111 58 23 67 18 5 461 377 0 8 4 12 64 41 27 0 c 134 209 172 117 418 379 19 49 482 13 444 84 168 278 169 0 g 145 152 260 115 38 111 11 57 12 10 42 394 135 120 231 0 t 106 77 41 197 22 1 5 13 2 465 6 6 129 57 69 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift0 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=15; shift=0; ncol=15; ssstCCAACTCCcss ; Alignment reference a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57

oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; ssstCCAACTCCcss ; cor=; Ncor= a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4_rc; m=2/9; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.914905; ssskgCAACTCCcss ; cor=; Ncor= a 83 55 49 73 22 5 363 356 1 9 15 11 39 52 28 c 111 165 194 100 72 340 19 16 384 3 328 351 230 148 149 g 127 119 134 111 268 48 15 20 9 23 42 36 73 140 170 t 81 63 25 118 40 9 5 10 8 367 17 4 60 62 55

oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3; m=3/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.894308; gsstCCAACTGCCss ; cor=; Ncor= a 73 49 29 44 10 5 315 285 1 10 19 14 15 37 25 c 85 129 123 63 292 288 15 32 337 9 55 266 250 152 126 g 113 118 168 73 35 56 14 24 11 17 256 56 45 124 143 t 79 54 30 170 13 1 6 9 1 314 20 14 40 37 56

oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=4/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.883553; ssstCCAACTCGbcs ; cor=; Ncor= a 111 58 23 67 18 5 461 377 0 8 4 12 64 41 27 c 134 209 172 117 418 379 19 49 482 13 444 84 168 278 169 g 145 152 260 115 38 111 11 57 12 10 42 394 135 120 231 t 106 77 41 197 22 1 5 13 2 465 6 6 129 57 69

oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=5/9; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.825089; -ssGCCAACTCCCgs ; cor=; Ncor= a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=6/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.817188; -sscCGAACTCCcss ; cor=; Ncor= a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66

oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=7/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.749819; -ssGCCAACTCGtcs ; cor=; Ncor= a 0 47 18 25 3 4 304 255 0 5 6 5 30 40 21 c 0 143 157 37 300 269 14 39 321 7 303 53 56 178 132 g 0 102 144 261 25 68 16 35 18 24 30 280 61 79 154 t 0 51 24 20 15 2 9 14 4 307 4 5 196 46 36

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=8/9; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.745099; -sscCGAACTCCCss ; cor=; Ncor= a 0 38 34 29 8 2 310 311 3 6 7 7 25 22 22 c 0 143 133 232 291 38 9 17 320 17 290 300 252 93 120 g 0 118 161 56 36 306 12 14 20 17 42 37 39 213 156 t 0 51 22 33 15 4 19 8 7 310 11 6 34 22 52

oligos_7nt_test_vs_ctrl_m4_shift1 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4; m=9/9; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.711362; -ssGCCAACTGCCGs ; cor=; Ncor= a 0 41 27 14 11 3 209 189 3 10 16 3 7 16 21 c 0 100 103 26 201 196 12 28 220 13 26 217 206 45 97 g 0 73 101 186 21 40 17 22 16 15 190 21 18 168 90 t 0 30 13 18 11 5 6 5 5 206 12 3 13 15 36

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift1 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift1 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssGCCAACTGCCGss ; Alignment reference a 0 41 27 14 11 3 209 189 3 10 16 3 7 16 21 54 c 0 100 103 26 201 196 12 28 220 13 26 217 206 45 97 62 g 0 73 101 186 21 40 17 22 16 15 190 21 18 168 90 83 t 0 30 13 18 11 5 6 5 5 206 12 3 13 15 36 45

oligos_7nt_test_vs_ctrl_m4_shift1 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/7; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssGCCAACTGCCGss ; cor=; Ncor= a 0 41 27 14 11 3 209 189 3 10 16 3 7 16 21 54 c 0 100 103 26 201 196 12 28 220 13 26 217 206 45 97 62 g 0 73 101 186 21 40 17 22 16 15 190 21 18 168 90 83 t 0 30 13 18 11 5 6 5 5 206 12 3 13 15 36 45

oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=2/7; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.906426; -ssGCCAACTCCCgss ; cor=; Ncor= a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 66 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 78 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 97 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60 54

oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3; m=3/7; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.807043; gsstCCAACTGCCss- ; cor=; Ncor= a 73 49 29 44 10 5 315 285 1 10 19 14 15 37 25 0 c 85 129 123 63 292 288 15 32 337 9 55 266 250 152 126 0 g 113 118 168 73 35 56 14 24 11 17 256 56 45 124 143 0 t 79 54 30 170 13 1 6 9 1 314 20 14 40 37 56 0

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=4/7; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.734185; -sscCGAACTCCCsss ; cor=; Ncor= a 0 38 34 29 8 2 310 311 3 6 7 7 25 22 22 83 c 0 143 133 232 291 38 9 17 320 17 290 300 252 93 120 101 g 0 118 161 56 36 306 12 14 20 17 42 37 39 213 156 96 t 0 51 22 33 15 4 19 8 7 310 11 6 34 22 52 70

oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=5/7; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.711362; ssstCCAACTCCcss- ; cor=; Ncor= a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 0 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 0 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 0 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57 0

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=6/7; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.65968; -sscCGAACTCCcss- ; cor=; Ncor= a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 0 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 0 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 0 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66 0

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4_rc; m=7/7; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.659271; ssskgCAACTCCcss- ; cor=; Ncor= a 83 55 49 73 22 5 363 356 1 9 15 11 39 52 28 0 c 111 165 194 100 72 340 19 16 384 3 328 351 230 148 149 0 g 127 119 134 111 268 48 15 20 9 23 42 36 73 140 170 0 t 81 63 25 118 40 9 5 10 8 367 17 4 60 62 55 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift1 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssGCCAACTCCCgss ; Alignment reference a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 66 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 78 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 97 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60 54

oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/9; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssGCCAACTCCCgss ; cor=; Ncor= a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 66 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 78 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 97 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60 54

oligos_7nt_test_vs_ctrl_m4_shift1 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=2/9; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.906426; -ssGCCAACTGCCGss ; cor=; Ncor= a 0 41 27 14 11 3 209 189 3 10 16 3 7 16 21 54 c 0 100 103 26 201 196 12 28 220 13 26 217 206 45 97 62 g 0 73 101 186 21 40 17 22 16 15 190 21 18 168 90 83 t 0 30 13 18 11 5 6 5 5 206 12 3 13 15 36 45

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=3/9; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.839037; -sscCGAACTCCCsss ; cor=; Ncor= a 0 38 34 29 8 2 310 311 3 6 7 7 25 22 22 83 c 0 143 133 232 291 38 9 17 320 17 290 300 252 93 120 101 g 0 118 161 56 36 306 12 14 20 17 42 37 39 213 156 96 t 0 51 22 33 15 4 19 8 7 310 11 6 34 22 52 70

oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=4/9; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.825089; ssstCCAACTCCcss- ; cor=; Ncor= a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 0 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 0 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 0 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57 0

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=5/9; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.777879; -sscCGAACTCCcss- ; cor=; Ncor= a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 0 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 0 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 0 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66 0

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4_rc; m=6/9; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.773766; ssskgCAACTCCcss- ; cor=; Ncor= a 83 55 49 73 22 5 363 356 1 9 15 11 39 52 28 0 c 111 165 194 100 72 340 19 16 384 3 328 351 230 148 149 0 g 127 119 134 111 268 48 15 20 9 23 42 36 73 140 170 0 t 81 63 25 118 40 9 5 10 8 367 17 4 60 62 55 0

oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3; m=7/9; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.753045; gsstCCAACTGCCss- ; cor=; Ncor= a 73 49 29 44 10 5 315 285 1 10 19 14 15 37 25 0 c 85 129 123 63 292 288 15 32 337 9 55 266 250 152 126 0 g 113 118 168 73 35 56 14 24 11 17 256 56 45 124 143 0 t 79 54 30 170 13 1 6 9 1 314 20 14 40 37 56 0

oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=8/9; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.746507; -ssGCCAACTCGtcs- ; cor=; Ncor= a 0 47 18 25 3 4 304 255 0 5 6 5 30 40 21 0 c 0 143 157 37 300 269 14 39 321 7 303 53 56 178 132 0 g 0 102 144 261 25 68 16 35 18 24 30 280 61 79 154 0 t 0 51 24 20 15 2 9 14 4 307 4 5 196 46 36 0

oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=9/9; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.699765; ssstCCAACTCGbcs- ; cor=; Ncor= a 111 58 23 67 18 5 461 377 0 8 4 12 64 41 27 0 c 134 209 172 117 418 379 19 49 482 13 444 84 168 278 169 0 g 145 152 260 115 38 111 11 57 12 10 42 394 135 120 231 0 t 106 77 41 197 22 1 5 13 2 465 6 6 129 57 69 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift1 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=14; shift=1; ncol=15; -sscCGAACTCCcss ; Alignment reference a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/9; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -sscCGAACTCCcss ; cor=; Ncor= a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=2/9; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.91502; -sscCGAACTCCCss ; cor=; Ncor= a 0 38 34 29 8 2 310 311 3 6 7 7 25 22 22 c 0 143 133 232 291 38 9 17 320 17 290 300 252 93 120 g 0 118 161 56 36 306 12 14 20 17 42 37 39 213 156 t 0 51 22 33 15 4 19 8 7 310 11 6 34 22 52

oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=3/9; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.817188; ssstCCAACTCCcss ; cor=; Ncor= a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57

oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=4/9; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.777879; -ssGCCAACTCCCgs ; cor=; Ncor= a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4_rc; m=5/9; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.742314; ssskgCAACTCCcss ; cor=; Ncor= a 83 55 49 73 22 5 363 356 1 9 15 11 39 52 28 c 111 165 194 100 72 340 19 16 384 3 328 351 230 148 149 g 127 119 134 111 268 48 15 20 9 23 42 36 73 140 170 t 81 63 25 118 40 9 5 10 8 367 17 4 60 62 55

oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=6/9; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.737557; ssstCCAACTCGbcs ; cor=; Ncor= a 111 58 23 67 18 5 461 377 0 8 4 12 64 41 27 c 134 209 172 117 418 379 19 49 482 13 444 84 168 278 169 g 145 152 260 115 38 111 11 57 12 10 42 394 135 120 231 t 106 77 41 197 22 1 5 13 2 465 6 6 129 57 69

oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=7/9; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.724209; -ssGCCAACTCGtcs ; cor=; Ncor= a 0 47 18 25 3 4 304 255 0 5 6 5 30 40 21 c 0 143 157 37 300 269 14 39 321 7 303 53 56 178 132 g 0 102 144 261 25 68 16 35 18 24 30 280 61 79 154 t 0 51 24 20 15 2 9 14 4 307 4 5 196 46 36

oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3; m=8/9; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.711298; gsstCCAACTGCCss ; cor=; Ncor= a 73 49 29 44 10 5 315 285 1 10 19 14 15 37 25 c 85 129 123 63 292 288 15 32 337 9 55 266 250 152 126 g 113 118 168 73 35 56 14 24 11 17 256 56 45 124 143 t 79 54 30 170 13 1 6 9 1 314 20 14 40 37 56

oligos_7nt_test_vs_ctrl_m4_shift1 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=9/9; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.65968; -ssGCCAACTGCCGs ; cor=; Ncor= a 0 41 27 14 11 3 209 189 3 10 16 3 7 16 21 c 0 100 103 26 201 196 12 28 220 13 26 217 206 45 97 g 0 73 101 186 21 40 17 22 16 15 190 21 18 168 90 t 0 30 13 18 11 5 6 5 5 206 12 3 13 15 36

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=14; shift=0; ncol=14; sgaCGAGtTGCtss ; Alignment reference a 37 46 228 2 10 355 4 19 9 4 14 31 12 51 c 188 89 75 340 45 20 25 55 14 55 309 53 163 121 g 150 210 61 43 339 16 362 63 21 327 58 46 192 181 t 20 50 31 10 1 4 4 258 351 9 14 265 28 42

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/4; ncol2=14; w=0; offset=0; strand=D; shift=0; score= 1; sgaCGAGtTGCtss ; cor=; Ncor= a 37 46 228 2 10 355 4 19 9 4 14 31 12 51 c 188 89 75 340 45 20 25 55 14 55 309 53 163 121 g 150 210 61 43 339 16 362 63 21 327 58 46 192 181 t 20 50 31 10 1 4 4 258 351 9 14 265 28 42

oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1_rc; m=2/4; ncol2=14; w=0; offset=0; strand=R; shift=0; score=0.809147; sgaCGAGTTGGCss ; cor=; Ncor= a 36 46 196 5 4 307 4 14 9 2 15 20 24 51 c 154 79 61 280 30 24 18 35 16 68 25 261 144 102 g 132 178 56 53 303 7 321 39 14 269 300 37 157 143 t 21 40 30 5 6 5 0 255 304 4 3 25 18 47

oligos_6nt_test_vs_ctrl_m5_rc_shift0 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5_rc; m=3/4; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.76935; sgvCGAGTTGGass ; cor=; Ncor= a 69 57 129 6 6 465 2 13 5 1 22 197 41 77 c 231 120 135 394 42 10 12 57 11 111 38 115 260 152 g 169 278 168 84 444 13 482 49 19 379 418 117 172 209 t 27 41 64 12 4 8 0 377 461 5 18 67 23 58

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4; m=4/4; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.725996; ssgGGAGTTGcmss ; cor=; Ncor= a 55 62 60 4 17 367 8 10 5 9 40 118 25 63 c 170 140 73 36 42 23 9 20 15 48 268 111 134 119 g 149 148 230 351 328 3 384 16 19 340 72 100 194 165 t 28 52 39 11 15 9 1 356 363 5 22 73 49 55

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift1 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssgGGAGTTGcmsss ; Alignment reference a 0 55 62 60 4 17 367 8 10 5 9 40 118 25 63 81 c 0 170 140 73 36 42 23 9 20 15 48 268 111 134 119 127 g 0 149 148 230 351 328 3 384 16 19 340 72 100 194 165 111 t 0 28 52 39 11 15 9 1 356 363 5 22 73 49 55 83

oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssgGGAGTTGcmsss ; cor=; Ncor= a 0 55 62 60 4 17 367 8 10 5 9 40 118 25 63 81 c 0 170 140 73 36 42 23 9 20 15 48 268 111 134 119 127 g 0 149 148 230 351 328 3 384 16 19 340 72 100 194 165 111 t 0 28 52 39 11 15 9 1 356 363 5 22 73 49 55 83

oligos_6nt_test_vs_ctrl_m1_rc_shift1 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1_rc; m=2/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.914905; -ssgGGAGTTGGasss ; cor=; Ncor= a 0 57 58 61 4 18 372 4 9 6 3 31 183 34 63 85 c 0 181 148 75 48 34 19 16 30 15 72 42 87 205 114 118 g 0 154 170 237 354 351 10 396 24 19 340 327 92 157 186 125 t 0 26 42 45 12 15 17 2 355 378 3 18 56 22 55 90

oligos_6nt_test_vs_ctrl_m3_rc_shift1 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3_rc; m=3/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.806231; -ssGGCAGTTGGassc ; cor=; Ncor= a 0 56 37 40 14 20 314 1 9 6 1 13 170 30 54 79 c 0 143 124 45 56 256 17 11 24 14 56 35 73 168 118 113 g 0 126 152 250 266 55 9 337 32 15 288 292 63 123 129 85 t 0 25 37 15 14 19 10 1 285 315 5 10 44 29 49 73

oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5_rc; m=4/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.77586; -sgvCGAGTTGGasss ; cor=; Ncor= a 0 69 57 129 6 6 465 2 13 5 1 22 197 41 77 106 c 0 231 120 135 394 42 10 12 57 11 111 38 115 260 152 145 g 0 169 278 168 84 444 13 482 49 19 379 418 117 172 209 134 t 0 27 41 64 12 4 8 0 377 461 5 18 67 23 58 111

oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2_rc; m=5/10; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.773766; sscGGGAGTTGGCss- ; cor=; Ncor= a 54 60 32 28 2 12 265 6 7 7 4 18 19 25 41 0 c 97 108 177 29 23 38 15 19 28 13 45 30 201 121 87 0 g 78 112 67 219 263 229 9 268 20 14 244 232 46 129 123 0 t 66 15 19 19 7 16 6 2 240 261 2 15 29 20 44 0

oligos_6nt_test_vs_ctrl_m2_rc_shift1 (oligos_6nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2_rc; m=6/10; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.742314; -ssgGGAGTTCGgss- ; cor=; Ncor= a 0 66 60 94 7 13 458 2 4 19 3 33 63 35 70 0 c 0 233 184 91 65 49 21 28 7 12 437 66 104 247 165 0 g 0 177 225 257 420 435 15 471 14 11 61 397 263 180 213 0 t 0 29 36 63 13 8 11 4 480 463 4 9 75 43 57 0

oligos_7nt_test_vs_ctrl_m5_shift1 (oligos_7nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5; m=7/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.725996; -sgaCGAGtTGCtss- ; cor=; Ncor= a 0 37 46 228 2 10 355 4 19 9 4 14 31 12 51 0 c 0 188 89 75 340 45 20 25 55 14 55 309 53 163 121 0 g 0 150 210 61 43 339 16 362 63 21 327 58 46 192 181 0 t 0 20 50 31 10 1 4 4 258 351 9 14 265 28 42 0

oligos_7nt_test_vs_ctrl_m3_rc_shift0 (oligos_7nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3_rc; m=8/10; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.671261; sssGGGAGTTCGgss- ; cor=; Ncor= a 70 52 22 34 6 11 310 7 8 19 4 15 33 22 51 0 c 96 156 213 39 37 42 17 20 14 12 306 36 56 161 118 0 g 101 120 93 252 300 290 17 320 17 9 38 291 232 133 143 0 t 83 22 22 25 7 7 6 3 311 310 2 8 29 34 38 0

oligos_7nt_test_vs_ctrl_m1_rc_shift1 (oligos_7nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1_rc; m=9/10; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.668812; -sgaCGAGTTGGCss- ; cor=; Ncor= a 0 36 46 196 5 4 307 4 14 9 2 15 20 24 51 0 c 0 154 79 61 280 30 24 18 35 16 68 25 261 144 102 0 g 0 132 178 56 53 303 7 321 39 14 269 300 37 157 143 0 t 0 21 40 30 5 6 5 0 255 304 4 3 25 18 47 0

oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4_rc; m=10/10; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.659271; ssCGGCAGTTGGCss- ; cor=; Ncor= a 45 36 15 13 3 12 206 5 5 6 5 11 18 13 30 0 c 83 90 168 18 21 190 15 16 22 17 40 21 186 101 73 0 g 62 97 45 206 217 26 13 220 28 12 196 201 26 103 100 0 t 54 21 16 7 3 16 10 3 189 209 3 11 14 27 41 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift1 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=14; shift=1; ncol=15; -ssGCCAACTCGtcs ; Alignment reference a 0 47 18 25 3 4 304 255 0 5 6 5 30 40 21 c 0 143 157 37 300 269 14 39 321 7 303 53 56 178 132 g 0 102 144 261 25 68 16 35 18 24 30 280 61 79 154 t 0 51 24 20 15 2 9 14 4 307 4 5 196 46 36

oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/7; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -ssGCCAACTCGtcs ; cor=; Ncor= a 0 47 18 25 3 4 304 255 0 5 6 5 30 40 21 c 0 143 157 37 300 269 14 39 321 7 303 53 56 178 132 g 0 102 144 261 25 68 16 35 18 24 30 280 61 79 154 t 0 51 24 20 15 2 9 14 4 307 4 5 196 46 36

oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=2/7; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.874835; ssstCCAACTCGbcs ; cor=; Ncor= a 111 58 23 67 18 5 461 377 0 8 4 12 64 41 27 c 134 209 172 117 418 379 19 49 482 13 444 84 168 278 169 g 145 152 260 115 38 111 11 57 12 10 42 394 135 120 231 t 106 77 41 197 22 1 5 13 2 465 6 6 129 57 69

oligos_7nt_test_vs_ctrl_m5_rc_shift1 (oligos_7nt_test_vs_ctrl_m5_rc)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5_rc; m=3/7; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.809147; -ssaGCAaCTCGtcs ; cor=; Ncor= a 0 42 28 265 14 9 351 258 4 4 1 10 31 50 20 c 0 181 192 46 58 327 21 63 362 16 339 43 61 210 150 g 0 121 163 53 309 55 14 55 25 20 45 340 75 89 188 t 0 51 12 31 14 4 9 19 4 355 10 2 228 46 37

oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=4/7; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.749819; ssstCCAACTCCcss ; cor=; Ncor= a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57

oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=5/7; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.746507; -ssGCCAACTCCCgs ; cor=; Ncor= a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=6/7; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.724209; -sscCGAACTCCcss ; cor=; Ncor= a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4_rc; m=7/7; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.668812; ssskgCAACTCCcss ; cor=; Ncor= a 83 55 49 73 22 5 363 356 1 9 15 11 39 52 28 c 111 165 194 100 72 340 19 16 384 3 328 351 230 148 149 g 127 119 134 111 268 48 15 20 9 23 42 36 73 140 170 t 81 63 25 118 40 9 5 10 8 367 17 4 60 62 55

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=15; shift=0; ncol=15; gsstCCAACTGCCss ; Alignment reference a 73 49 29 44 10 5 315 285 1 10 19 14 15 37 25 c 85 129 123 63 292 288 15 32 337 9 55 266 250 152 126 g 113 118 168 73 35 56 14 24 11 17 256 56 45 124 143 t 79 54 30 170 13 1 6 9 1 314 20 14 40 37 56
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/8; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; gsstCCAACTGCCss ; cor=; Ncor= a 73 49 29 44 10 5 315 285 1 10 19 14 15 37 25 c 85 129 123 63 292 288 15 32 337 9 55 266 250 152 126 g 113 118 168 73 35 56 14 24 11 17 256 56 45 124 143 t 79 54 30 170 13 1 6 9 1 314 20 14 40 37 56
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=2/8; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.894308; ssstCCAACTCCcss ; cor=; Ncor= a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57
oligos_7nt_test_vs_ctrl_m4_shift1 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4; m=3/8; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.807043; -ssGCCAACTGCCGs ; cor=; Ncor= a 0 41 27 14 11 3 209 189 3 10 16 3 7 16 21 c 0 100 103 26 201 196 12 28 220 13 26 217 206 45 97 g 0 73 101 186 21 40 17 22 16 15 190 21 18 168 90 t 0 30 13 18 11 5 6 5 5 206 12 3 13 15 36
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4_rc; m=4/8; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.806231; ssskgCAACTCCcss ; cor=; Ncor= a 83 55 49 73 22 5 363 356 1 9 15 11 39 52 28 c 111 165 194 100 72 340 19 16 384 3 328 351 230 148 149 g 127 119 134 111 268 48 15 20 9 23 42 36 73 140 170 t 81 63 25 118 40 9 5 10 8 367 17 4 60 62 55
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5; m=5/8; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.783504; ssstCCAACTCGbcs ; cor=; Ncor= a 111 58 23 67 18 5 461 377 0 8 4 12 64 41 27 c 134 209 172 117 418 379 19 49 482 13 444 84 168 278 169 g 145 152 260 115 38 111 11 57 12 10 42 394 135 120 231 t 106 77 41 197 22 1 5 13 2 465 6 6 129 57 69
oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2; m=6/8; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.753045; -ssGCCAACTCCCgs ; cor=; Ncor= a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2; m=7/8; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.711298; -sscCGAACTCCcss ; cor=; Ncor= a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=8/8; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.661488; -sscCGAACTCCCss ; cor=; Ncor= a 0 38 34 29 8 2 310 311 3 6 7 7 25 22 22 c 0 143 133 232 291 38 9 17 320 17 290 300 252 93 120 g 0 118 161 56 36 306 12 14 20 17 42 37 39 213 156 t 0 51 22 33 15 4 19 8 7 310 11 6 34 22 52

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=15; shift=0; ncol=15; ssstCCAACTCGbcs ; Alignment reference a 111 58 23 67 18 5 461 377 0 8 4 12 64 41 27 c 134 209 172 117 418 379 19 49 482 13 444 84 168 278 169 g 145 152 260 115 38 111 11 57 12 10 42 394 135 120 231 t 106 77 41 197 22 1 5 13 2 465 6 6 129 57 69
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; ssstCCAACTCGbcs ; cor=; Ncor= a 111 58 23 67 18 5 461 377 0 8 4 12 64 41 27 c 134 209 172 117 418 379 19 49 482 13 444 84 168 278 169 g 145 152 260 115 38 111 11 57 12 10 42 394 135 120 231 t 106 77 41 197 22 1 5 13 2 465 6 6 129 57 69
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=2/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.883553; ssstCCAACTCCcss ; cor=; Ncor= a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1; m=3/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.874835; -ssGCCAACTCGtcs ; cor=; Ncor= a 0 47 18 25 3 4 304 255 0 5 6 5 30 40 21 c 0 143 157 37 300 269 14 39 321 7 303 53 56 178 132 g 0 102 144 261 25 68 16 35 18 24 30 280 61 79 154 t 0 51 24 20 15 2 9 14 4 307 4 5 196 46 36
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3; m=4/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.783504; gsstCCAACTGCCss ; cor=; Ncor= a 73 49 29 44 10 5 315 285 1 10 19 14 15 37 25 c 85 129 123 63 292 288 15 32 337 9 55 266 250 152 126 g 113 118 168 73 35 56 14 24 11 17 256 56 45 124 143 t 79 54 30 170 13 1 6 9 1 314 20 14 40 37 56
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4_rc; m=5/9; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.77586; ssskgCAACTCCcss ; cor=; Ncor= a 83 55 49 73 22 5 363 356 1 9 15 11 39 52 28 c 111 165 194 100 72 340 19 16 384 3 328 351 230 148 149 g 127 119 134 111 268 48 15 20 9 23 42 36 73 140 170 t 81 63 25 118 40 9 5 10 8 367 17 4 60 62 55
oligos_7nt_test_vs_ctrl_m5_rc_shift1 (oligos_7nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5_rc; m=6/9; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.76935; -ssaGCAaCTCGtcs ; cor=; Ncor= a 0 42 28 265 14 9 351 258 4 4 1 10 31 50 20 c 0 181 192 46 58 327 21 63 362 16 339 43 61 210 150 g 0 121 163 53 309 55 14 55 25 20 45 340 75 89 188 t 0 51 12 31 14 4 9 19 4 355 10 2 228 46 37
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2; m=7/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.737557; -sscCGAACTCCcss ; cor=; Ncor= a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66
oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2; m=8/9; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.699765; -ssGCCAACTCCCgs ; cor=; Ncor= a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3; m=9/9; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.646535; -sscCGAACTCCCss ; cor=; Ncor= a 0 38 34 29 8 2 310 311 3 6 7 7 25 22 22 c 0 143 133 232 291 38 9 17 320 17 290 300 252 93 120 g 0 118 161 56 36 306 12 14 20 17 42 37 39 213 156 t 0 51 22 33 15 4 19 8 7 310 11 6 34 22 52

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=15; shift=1; ncol=16; -sscCGAACTCCCsss ; Alignment reference a 0 38 34 29 8 2 310 311 3 6 7 7 25 22 22 83 c 0 143 133 232 291 38 9 17 320 17 290 300 252 93 120 101 g 0 118 161 56 36 306 12 14 20 17 42 37 39 213 156 96 t 0 51 22 33 15 4 19 8 7 310 11 6 34 22 52 70
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/8; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -sscCGAACTCCCsss ; cor=; Ncor= a 0 38 34 29 8 2 310 311 3 6 7 7 25 22 22 83 c 0 143 133 232 291 38 9 17 320 17 290 300 252 93 120 101 g 0 118 161 56 36 306 12 14 20 17 42 37 39 213 156 96 t 0 51 22 33 15 4 19 8 7 310 11 6 34 22 52 70
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2; m=2/8; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.91502; -sscCGAACTCCcss- ; cor=; Ncor= a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 0 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 0 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 0 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66 0
oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2; m=3/8; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.839037; -ssGCCAACTCCCgss ; cor=; Ncor= a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 66 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 78 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 97 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60 54
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=4/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.745099; ssstCCAACTCCcss- ; cor=; Ncor= a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 0 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 0 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 0 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57 0
oligos_7nt_test_vs_ctrl_m4_shift1 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4; m=5/8; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.734185; -ssGCCAACTGCCGss ; cor=; Ncor= a 0 41 27 14 11 3 209 189 3 10 16 3 7 16 21 54 c 0 100 103 26 201 196 12 28 220 13 26 217 206 45 97 62 g 0 73 101 186 21 40 17 22 16 15 190 21 18 168 90 83 t 0 30 13 18 11 5 6 5 5 206 12 3 13 15 36 45
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4_rc; m=6/8; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.671261; ssskgCAACTCCcss- ; cor=; Ncor= a 83 55 49 73 22 5 363 356 1 9 15 11 39 52 28 0 c 111 165 194 100 72 340 19 16 384 3 328 351 230 148 149 0 g 127 119 134 111 268 48 15 20 9 23 42 36 73 140 170 0 t 81 63 25 118 40 9 5 10 8 367 17 4 60 62 55 0
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=7/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.661488; gsstCCAACTGCCss- ; cor=; Ncor= a 73 49 29 44 10 5 315 285 1 10 19 14 15 37 25 0 c 85 129 123 63 292 288 15 32 337 9 55 266 250 152 126 0 g 113 118 168 73 35 56 14 24 11 17 256 56 45 124 143 0 t 79 54 30 170 13 1 6 9 1 314 20 14 40 37 56 0
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5; m=8/8; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.646535; ssstCCAACTCGbcs- ; cor=; Ncor= a 111 58 23 67 18 5 461 377 0 8 4 12 64 41 27 0 c 134 209 172 117 418 379 19 49 482 13 444 84 168 278 169 0 g 145 152 260 115 38 111 11 57 12 10 42 394 135 120 231 0 t 106 77 41 197 22 1 5 13 2 465 6 6 129 57 69 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=15; shift=0; ncol=15; ssstCCAACTCCcss ; Alignment reference a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; ssstCCAACTCCcss ; cor=; Ncor= a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4_rc; m=2/9; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.914905; ssskgCAACTCCcss ; cor=; Ncor= a 83 55 49 73 22 5 363 356 1 9 15 11 39 52 28 c 111 165 194 100 72 340 19 16 384 3 328 351 230 148 149 g 127 119 134 111 268 48 15 20 9 23 42 36 73 140 170 t 81 63 25 118 40 9 5 10 8 367 17 4 60 62 55
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3; m=3/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.894308; gsstCCAACTGCCss ; cor=; Ncor= a 73 49 29 44 10 5 315 285 1 10 19 14 15 37 25 c 85 129 123 63 292 288 15 32 337 9 55 266 250 152 126 g 113 118 168 73 35 56 14 24 11 17 256 56 45 124 143 t 79 54 30 170 13 1 6 9 1 314 20 14 40 37 56
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=4/9; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.883553; ssstCCAACTCGbcs ; cor=; Ncor= a 111 58 23 67 18 5 461 377 0 8 4 12 64 41 27 c 134 209 172 117 418 379 19 49 482 13 444 84 168 278 169 g 145 152 260 115 38 111 11 57 12 10 42 394 135 120 231 t 106 77 41 197 22 1 5 13 2 465 6 6 129 57 69
oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=5/9; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.825089; -ssGCCAACTCCCgs ; cor=; Ncor= a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=6/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.817188; -sscCGAACTCCcss ; cor=; Ncor= a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=7/9; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.749819; -ssGCCAACTCGtcs ; cor=; Ncor= a 0 47 18 25 3 4 304 255 0 5 6 5 30 40 21 c 0 143 157 37 300 269 14 39 321 7 303 53 56 178 132 g 0 102 144 261 25 68 16 35 18 24 30 280 61 79 154 t 0 51 24 20 15 2 9 14 4 307 4 5 196 46 36
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=8/9; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.745099; -sscCGAACTCCCss ; cor=; Ncor= a 0 38 34 29 8 2 310 311 3 6 7 7 25 22 22 c 0 143 133 232 291 38 9 17 320 17 290 300 252 93 120 g 0 118 161 56 36 306 12 14 20 17 42 37 39 213 156 t 0 51 22 33 15 4 19 8 7 310 11 6 34 22 52
oligos_7nt_test_vs_ctrl_m4_shift1 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4; m=9/9; ncol2=15; w=0; offset=1; strand=D; shift=1; score=0.711362; -ssGCCAACTGCCGs ; cor=; Ncor= a 0 41 27 14 11 3 209 189 3 10 16 3 7 16 21 c 0 100 103 26 201 196 12 28 220 13 26 217 206 45 97 g 0 73 101 186 21 40 17 22 16 15 190 21 18 168 90 t 0 30 13 18 11 5 6 5 5 206 12 3 13 15 36

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift1 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssGCCAACTGCCGss ; Alignment reference a 0 41 27 14 11 3 209 189 3 10 16 3 7 16 21 54 c 0 100 103 26 201 196 12 28 220 13 26 217 206 45 97 62 g 0 73 101 186 21 40 17 22 16 15 190 21 18 168 90 83 t 0 30 13 18 11 5 6 5 5 206 12 3 13 15 36 45
oligos_7nt_test_vs_ctrl_m4_shift1 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/7; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssGCCAACTGCCGss ; cor=; Ncor= a 0 41 27 14 11 3 209 189 3 10 16 3 7 16 21 54 c 0 100 103 26 201 196 12 28 220 13 26 217 206 45 97 62 g 0 73 101 186 21 40 17 22 16 15 190 21 18 168 90 83 t 0 30 13 18 11 5 6 5 5 206 12 3 13 15 36 45
oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=2/7; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.906426; -ssGCCAACTCCCgss ; cor=; Ncor= a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 66 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 78 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 97 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60 54
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3; m=3/7; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.807043; gsstCCAACTGCCss- ; cor=; Ncor= a 73 49 29 44 10 5 315 285 1 10 19 14 15 37 25 0 c 85 129 123 63 292 288 15 32 337 9 55 266 250 152 126 0 g 113 118 168 73 35 56 14 24 11 17 256 56 45 124 143 0 t 79 54 30 170 13 1 6 9 1 314 20 14 40 37 56 0
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=4/7; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.734185; -sscCGAACTCCCsss ; cor=; Ncor= a 0 38 34 29 8 2 310 311 3 6 7 7 25 22 22 83 c 0 143 133 232 291 38 9 17 320 17 290 300 252 93 120 101 g 0 118 161 56 36 306 12 14 20 17 42 37 39 213 156 96 t 0 51 22 33 15 4 19 8 7 310 11 6 34 22 52 70
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=5/7; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.711362; ssstCCAACTCCcss- ; cor=; Ncor= a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 0 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 0 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 0 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57 0
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=6/7; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.65968; -sscCGAACTCCcss- ; cor=; Ncor= a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 0 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 0 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 0 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66 0
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4_rc; m=7/7; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.659271; ssskgCAACTCCcss- ; cor=; Ncor= a 83 55 49 73 22 5 363 356 1 9 15 11 39 52 28 0 c 111 165 194 100 72 340 19 16 384 3 328 351 230 148 149 0 g 127 119 134 111 268 48 15 20 9 23 42 36 73 140 170 0 t 81 63 25 118 40 9 5 10 8 367 17 4 60 62 55 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssGCCAACTCCCgss ; Alignment reference a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 66 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 78 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 97 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60 54
oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/9; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssGCCAACTCCCgss ; cor=; Ncor= a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 66 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 78 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 97 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60 54
oligos_7nt_test_vs_ctrl_m4_shift1 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=2/9; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.906426; -ssGCCAACTGCCGss ; cor=; Ncor= a 0 41 27 14 11 3 209 189 3 10 16 3 7 16 21 54 c 0 100 103 26 201 196 12 28 220 13 26 217 206 45 97 62 g 0 73 101 186 21 40 17 22 16 15 190 21 18 168 90 83 t 0 30 13 18 11 5 6 5 5 206 12 3 13 15 36 45
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=3/9; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.839037; -sscCGAACTCCCsss ; cor=; Ncor= a 0 38 34 29 8 2 310 311 3 6 7 7 25 22 22 83 c 0 143 133 232 291 38 9 17 320 17 290 300 252 93 120 101 g 0 118 161 56 36 306 12 14 20 17 42 37 39 213 156 96 t 0 51 22 33 15 4 19 8 7 310 11 6 34 22 52 70
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=4/9; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.825089; ssstCCAACTCCcss- ; cor=; Ncor= a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 0 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 0 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 0 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57 0
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=5/9; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.777879; -sscCGAACTCCcss- ; cor=; Ncor= a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 0 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 0 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 0 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66 0
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4_rc; m=6/9; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.773766; ssskgCAACTCCcss- ; cor=; Ncor= a 83 55 49 73 22 5 363 356 1 9 15 11 39 52 28 0 c 111 165 194 100 72 340 19 16 384 3 328 351 230 148 149 0 g 127 119 134 111 268 48 15 20 9 23 42 36 73 140 170 0 t 81 63 25 118 40 9 5 10 8 367 17 4 60 62 55 0
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3; m=7/9; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.753045; gsstCCAACTGCCss- ; cor=; Ncor= a 73 49 29 44 10 5 315 285 1 10 19 14 15 37 25 0 c 85 129 123 63 292 288 15 32 337 9 55 266 250 152 126 0 g 113 118 168 73 35 56 14 24 11 17 256 56 45 124 143 0 t 79 54 30 170 13 1 6 9 1 314 20 14 40 37 56 0
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=8/9; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.746507; -ssGCCAACTCGtcs- ; cor=; Ncor= a 0 47 18 25 3 4 304 255 0 5 6 5 30 40 21 0 c 0 143 157 37 300 269 14 39 321 7 303 53 56 178 132 0 g 0 102 144 261 25 68 16 35 18 24 30 280 61 79 154 0 t 0 51 24 20 15 2 9 14 4 307 4 5 196 46 36 0
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=9/9; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.699765; ssstCCAACTCGbcs- ; cor=; Ncor= a 111 58 23 67 18 5 461 377 0 8 4 12 64 41 27 0 c 134 209 172 117 418 379 19 49 482 13 444 84 168 278 169 0 g 145 152 260 115 38 111 11 57 12 10 42 394 135 120 231 0 t 106 77 41 197 22 1 5 13 2 465 6 6 129 57 69 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=14; shift=1; ncol=15; -sscCGAACTCCcss ; Alignment reference a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/9; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -sscCGAACTCCcss ; cor=; Ncor= a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=2/9; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.91502; -sscCGAACTCCCss ; cor=; Ncor= a 0 38 34 29 8 2 310 311 3 6 7 7 25 22 22 c 0 143 133 232 291 38 9 17 320 17 290 300 252 93 120 g 0 118 161 56 36 306 12 14 20 17 42 37 39 213 156 t 0 51 22 33 15 4 19 8 7 310 11 6 34 22 52
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=3/9; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.817188; ssstCCAACTCCcss ; cor=; Ncor= a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57
oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=4/9; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.777879; -ssGCCAACTCCCgs ; cor=; Ncor= a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4_rc; m=5/9; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.742314; ssskgCAACTCCcss ; cor=; Ncor= a 83 55 49 73 22 5 363 356 1 9 15 11 39 52 28 c 111 165 194 100 72 340 19 16 384 3 328 351 230 148 149 g 127 119 134 111 268 48 15 20 9 23 42 36 73 140 170 t 81 63 25 118 40 9 5 10 8 367 17 4 60 62 55
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=6/9; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.737557; ssstCCAACTCGbcs ; cor=; Ncor= a 111 58 23 67 18 5 461 377 0 8 4 12 64 41 27 c 134 209 172 117 418 379 19 49 482 13 444 84 168 278 169 g 145 152 260 115 38 111 11 57 12 10 42 394 135 120 231 t 106 77 41 197 22 1 5 13 2 465 6 6 129 57 69
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=7/9; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.724209; -ssGCCAACTCGtcs ; cor=; Ncor= a 0 47 18 25 3 4 304 255 0 5 6 5 30 40 21 c 0 143 157 37 300 269 14 39 321 7 303 53 56 178 132 g 0 102 144 261 25 68 16 35 18 24 30 280 61 79 154 t 0 51 24 20 15 2 9 14 4 307 4 5 196 46 36
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3; m=8/9; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.711298; gsstCCAACTGCCss ; cor=; Ncor= a 73 49 29 44 10 5 315 285 1 10 19 14 15 37 25 c 85 129 123 63 292 288 15 32 337 9 55 266 250 152 126 g 113 118 168 73 35 56 14 24 11 17 256 56 45 124 143 t 79 54 30 170 13 1 6 9 1 314 20 14 40 37 56
oligos_7nt_test_vs_ctrl_m4_shift1 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=9/9; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.65968; -ssGCCAACTGCCGs ; cor=; Ncor= a 0 41 27 14 11 3 209 189 3 10 16 3 7 16 21 c 0 100 103 26 201 196 12 28 220 13 26 217 206 45 97 g 0 73 101 186 21 40 17 22 16 15 190 21 18 168 90 t 0 30 13 18 11 5 6 5 5 206 12 3 13 15 36

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=14; shift=0; ncol=14; sgaCGAGtTGCtss ; Alignment reference a 37 46 228 2 10 355 4 19 9 4 14 31 12 51 c 188 89 75 340 45 20 25 55 14 55 309 53 163 121 g 150 210 61 43 339 16 362 63 21 327 58 46 192 181 t 20 50 31 10 1 4 4 258 351 9 14 265 28 42
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/4; ncol2=14; w=0; offset=0; strand=D; shift=0; score= 1; sgaCGAGtTGCtss ; cor=; Ncor= a 37 46 228 2 10 355 4 19 9 4 14 31 12 51 c 188 89 75 340 45 20 25 55 14 55 309 53 163 121 g 150 210 61 43 339 16 362 63 21 327 58 46 192 181 t 20 50 31 10 1 4 4 258 351 9 14 265 28 42
oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1_rc; m=2/4; ncol2=14; w=0; offset=0; strand=R; shift=0; score=0.809147; sgaCGAGTTGGCss ; cor=; Ncor= a 36 46 196 5 4 307 4 14 9 2 15 20 24 51 c 154 79 61 280 30 24 18 35 16 68 25 261 144 102 g 132 178 56 53 303 7 321 39 14 269 300 37 157 143 t 21 40 30 5 6 5 0 255 304 4 3 25 18 47
oligos_6nt_test_vs_ctrl_m5_rc_shift0 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5_rc; m=3/4; ncol2=15; w=0; offset=0; strand=R; shift=0; score=0.76935; sgvCGAGTTGGass ; cor=; Ncor= a 69 57 129 6 6 465 2 13 5 1 22 197 41 77 c 231 120 135 394 42 10 12 57 11 111 38 115 260 152 g 169 278 168 84 444 13 482 49 19 379 418 117 172 209 t 27 41 64 12 4 8 0 377 461 5 18 67 23 58
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4; m=4/4; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.725996; ssgGGAGTTGcmss ; cor=; Ncor= a 55 62 60 4 17 367 8 10 5 9 40 118 25 63 c 170 140 73 36 42 23 9 20 15 48 268 111 134 119 g 149 148 230 351 328 3 384 16 19 340 72 100 194 165 t 28 52 39 11 15 9 1 356 363 5 22 73 49 55

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssgGGAGTTGcmsss ; Alignment reference a 0 55 62 60 4 17 367 8 10 5 9 40 118 25 63 81 c 0 170 140 73 36 42 23 9 20 15 48 268 111 134 119 127 g 0 149 148 230 351 328 3 384 16 19 340 72 100 194 165 111 t 0 28 52 39 11 15 9 1 356 363 5 22 73 49 55 83
oligos_6nt_test_vs_ctrl_m4_shift1 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/10; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssgGGAGTTGcmsss ; cor=; Ncor= a 0 55 62 60 4 17 367 8 10 5 9 40 118 25 63 81 c 0 170 140 73 36 42 23 9 20 15 48 268 111 134 119 127 g 0 149 148 230 351 328 3 384 16 19 340 72 100 194 165 111 t 0 28 52 39 11 15 9 1 356 363 5 22 73 49 55 83
oligos_6nt_test_vs_ctrl_m1_rc_shift1 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1_rc; m=2/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.914905; -ssgGGAGTTGGasss ; cor=; Ncor= a 0 57 58 61 4 18 372 4 9 6 3 31 183 34 63 85 c 0 181 148 75 48 34 19 16 30 15 72 42 87 205 114 118 g 0 154 170 237 354 351 10 396 24 19 340 327 92 157 186 125 t 0 26 42 45 12 15 17 2 355 378 3 18 56 22 55 90
oligos_6nt_test_vs_ctrl_m3_rc_shift1 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3_rc; m=3/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.806231; -ssGGCAGTTGGassc ; cor=; Ncor= a 0 56 37 40 14 20 314 1 9 6 1 13 170 30 54 79 c 0 143 124 45 56 256 17 11 24 14 56 35 73 168 118 113 g 0 126 152 250 266 55 9 337 32 15 288 292 63 123 129 85 t 0 25 37 15 14 19 10 1 285 315 5 10 44 29 49 73
oligos_6nt_test_vs_ctrl_m5_rc_shift1 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5_rc; m=4/10; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.77586; -sgvCGAGTTGGasss ; cor=; Ncor= a 0 69 57 129 6 6 465 2 13 5 1 22 197 41 77 106 c 0 231 120 135 394 42 10 12 57 11 111 38 115 260 152 145 g 0 169 278 168 84 444 13 482 49 19 379 418 117 172 209 134 t 0 27 41 64 12 4 8 0 377 461 5 18 67 23 58 111
oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2_rc; m=5/10; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.773766; sscGGGAGTTGGCss- ; cor=; Ncor= a 54 60 32 28 2 12 265 6 7 7 4 18 19 25 41 0 c 97 108 177 29 23 38 15 19 28 13 45 30 201 121 87 0 g 78 112 67 219 263 229 9 268 20 14 244 232 46 129 123 0 t 66 15 19 19 7 16 6 2 240 261 2 15 29 20 44 0
oligos_6nt_test_vs_ctrl_m2_rc_shift1 (oligos_6nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2_rc; m=6/10; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.742314; -ssgGGAGTTCGgss- ; cor=; Ncor= a 0 66 60 94 7 13 458 2 4 19 3 33 63 35 70 0 c 0 233 184 91 65 49 21 28 7 12 437 66 104 247 165 0 g 0 177 225 257 420 435 15 471 14 11 61 397 263 180 213 0 t 0 29 36 63 13 8 11 4 480 463 4 9 75 43 57 0
oligos_7nt_test_vs_ctrl_m5_shift1 (oligos_7nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5; m=7/10; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.725996; -sgaCGAGtTGCtss- ; cor=; Ncor= a 0 37 46 228 2 10 355 4 19 9 4 14 31 12 51 0 c 0 188 89 75 340 45 20 25 55 14 55 309 53 163 121 0 g 0 150 210 61 43 339 16 362 63 21 327 58 46 192 181 0 t 0 20 50 31 10 1 4 4 258 351 9 14 265 28 42 0
oligos_7nt_test_vs_ctrl_m3_rc_shift0 (oligos_7nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3_rc; m=8/10; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.671261; sssGGGAGTTCGgss- ; cor=; Ncor= a 70 52 22 34 6 11 310 7 8 19 4 15 33 22 51 0 c 96 156 213 39 37 42 17 20 14 12 306 36 56 161 118 0 g 101 120 93 252 300 290 17 320 17 9 38 291 232 133 143 0 t 83 22 22 25 7 7 6 3 311 310 2 8 29 34 38 0
oligos_7nt_test_vs_ctrl_m1_rc_shift1 (oligos_7nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1_rc; m=9/10; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.668812; -sgaCGAGTTGGCss- ; cor=; Ncor= a 0 36 46 196 5 4 307 4 14 9 2 15 20 24 51 0 c 0 154 79 61 280 30 24 18 35 16 68 25 261 144 102 0 g 0 132 178 56 53 303 7 321 39 14 269 300 37 157 143 0 t 0 21 40 30 5 6 5 0 255 304 4 3 25 18 47 0
oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4_rc; m=10/10; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.659271; ssCGGCAGTTGGCss- ; cor=; Ncor= a 45 36 15 13 3 12 206 5 5 6 5 11 18 13 30 0 c 83 90 168 18 21 190 15 16 22 17 40 21 186 101 73 0 g 62 97 45 206 217 26 13 220 28 12 196 201 26 103 100 0 t 54 21 16 7 3 16 10 3 189 209 3 11 14 27 41 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=14; shift=1; ncol=15; -ssGCCAACTCGtcs ; Alignment reference a 0 47 18 25 3 4 304 255 0 5 6 5 30 40 21 c 0 143 157 37 300 269 14 39 321 7 303 53 56 178 132 g 0 102 144 261 25 68 16 35 18 24 30 280 61 79 154 t 0 51 24 20 15 2 9 14 4 307 4 5 196 46 36
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/7; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -ssGCCAACTCGtcs ; cor=; Ncor= a 0 47 18 25 3 4 304 255 0 5 6 5 30 40 21 c 0 143 157 37 300 269 14 39 321 7 303 53 56 178 132 g 0 102 144 261 25 68 16 35 18 24 30 280 61 79 154 t 0 51 24 20 15 2 9 14 4 307 4 5 196 46 36
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=2/7; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.874835; ssstCCAACTCGbcs ; cor=; Ncor= a 111 58 23 67 18 5 461 377 0 8 4 12 64 41 27 c 134 209 172 117 418 379 19 49 482 13 444 84 168 278 169 g 145 152 260 115 38 111 11 57 12 10 42 394 135 120 231 t 106 77 41 197 22 1 5 13 2 465 6 6 129 57 69
oligos_7nt_test_vs_ctrl_m5_rc_shift1 (oligos_7nt_test_vs_ctrl_m5_rc)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5_rc; m=3/7; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.809147; -ssaGCAaCTCGtcs ; cor=; Ncor= a 0 42 28 265 14 9 351 258 4 4 1 10 31 50 20 c 0 181 192 46 58 327 21 63 362 16 339 43 61 210 150 g 0 121 163 53 309 55 14 55 25 20 45 340 75 89 188 t 0 51 12 31 14 4 9 19 4 355 10 2 228 46 37
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=4/7; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.749819; ssstCCAACTCCcss ; cor=; Ncor= a 90 55 22 56 18 3 378 355 2 17 15 12 45 42 26 c 125 186 157 92 327 340 19 24 396 10 351 354 237 170 154 g 118 114 205 87 42 72 15 30 16 19 34 48 75 148 181 t 85 63 34 183 31 3 6 9 4 372 18 4 61 58 57
oligos_7nt_test_vs_ctrl_m2_shift1 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=5/7; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.746507; -ssGCCAACTCCCgs ; cor=; Ncor= a 0 44 20 29 15 2 261 240 2 6 16 7 19 19 15 c 0 123 129 46 232 244 14 20 268 9 229 263 219 67 112 g 0 87 121 201 30 45 13 28 19 15 38 23 29 177 108 t 0 41 25 19 18 4 7 7 6 265 12 2 28 32 60
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=6/7; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.724209; -sscCGAACTCCcss ; cor=; Ncor= a 0 57 43 75 9 4 463 480 4 11 8 13 63 36 29 c 0 213 180 263 397 61 11 14 471 15 435 420 257 225 177 g 0 165 247 104 66 437 12 7 28 21 49 65 91 184 233 t 0 70 35 63 33 3 19 4 2 458 13 7 94 60 66
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4_rc; m=7/7; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.668812; ssskgCAACTCCcss ; cor=; Ncor= a 83 55 49 73 22 5 363 356 1 9 15 11 39 52 28 c 111 165 194 100 72 340 19 16 384 3 328 351 230 148 149 g 127 119 134 111 268 48 15 20 9 23 42 36 73 140 170 t 81 63 25 118 40 9 5 10 8 367 17 4 60 62 55