/var/www/html/rsat/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title phoP -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	330
	Sum of sequence lengths      	89952
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	272
	Possible positions           	89622
 Oligonucleotide statistics:
	Total occurrences    	87336
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	89622
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	1	20
	2	-24	[-479,-460]	-469.5	1	20
	3	-23	[-459,-440]	-449.5	2	30
	4	-22	[-439,-420]	-429.5	2	40
	5	-21	[-419,-400]	-409.5	2	40
	6	-20	[-399,-380]	-389.5	4	61
	7	-19	[-379,-360]	-369.5	5	96
	8	-18	[-359,-340]	-349.5	6	105
	9	-17	[-339,-320]	-329.5	8	136
	10	-16	[-319,-300]	-309.5	9	167
	11	-15	[-299,-280]	-289.5	15	243
	12	-14	[-279,-260]	-269.5	19	332
	13	-13	[-259,-240]	-249.5	27	455
	14	-12	[-239,-220]	-229.5	33	585
	15	-11	[-219,-200]	-209.5	46	763
	16	-10	[-199,-180]	-189.5	59	1062
	17	-9	[-179,-160]	-169.5	79	1362
	18	-8	[-159,-140]	-149.5	113	1885
	19	-7	[-139,-120]	-129.5	158	2709
	20	-6	[-119,-100]	-109.5	210	3674
	21	-5	[-99,-80]	-89.5	290	5066
	22	-4	[-79,-60]	-69.5	330	6484
	23	-3	[-59,-40]	-49.5	330	6600
	24	-2	[-39,-20]	-29.5	330	6600
	25	-1	[-19,0]	-9.5	330	6600
	26	0	[1,20]	10.5	330	6600
	27	1	[21,40]	30.5	330	6600
	28	2	[41,60]	50.5	330	6600
	29	3	[61,80]	70.5	330	6403
	30	4	[81,100]	90.5	285	4911
	31	5	[101,120]	110.5	207	3576
	32	6	[121,140]	130.5	156	2620
	33	7	[141,160]	150.5	107	1819
	34	8	[161,180]	170.5	76	1316
	35	9	[181,200]	190.5	57	1036
	36	10	[201,220]	210.5	46	738
	37	11	[221,240]	230.5	32	573
	38	12	[241,260]	250.5	26	439
	39	13	[261,280]	270.5	19	326
	40	14	[281,300]	290.5	15	233
	41	15	[301,320]	310.5	9	165
	42	16	[321,340]	330.5	7	131
	43	17	[341,360]	350.5	6	103
	44	18	[361,380]	370.5	5	93
	45	19	[381,400]	390.5	4	58
	46	20	[401,420]	410.5	2	40
	47	21	[421,440]	430.5	2	40
	48	22	[441,460]	450.5	2	28
	49	23	[461,480]	470.5	1	20
	50	24	[481,500]	490.5	1	19

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 8273 67.5 49 4.1e-02 0.65 0.19 1 4 1 1 3 6 9 9 9 10 20 17 36 37 54 68 87 132 196 217 316 445 637 600 671 678 674 612 568 537 419 324 214 153 127 96 57 56 40 40 22 15 16 4 11 6 5 5 4 3 2
aa aa 8920 61.9 49 1.0e-01 1.6 -0.22 2 2 2 4 3 3 7 7 12 19 18 37 32 47 56 77 99 137 182 290 385 436 545 626 688 693 700 679 651 621 512 362 288 182 144 93 77 48 29 38 26 17 14 10 8 5 3 4 0 1 1
ct ct 4540 61.6 49 1.1e-01 1.7 -0.23 3 2 1 3 1 2 5 6 8 6 8 13 17 18 31 47 49 71 99 147 183 281 380 304 305 260 298 361 343 342 230 197 122 97 62 55 52 26 31 16 13 12 7 7 7 1 4 3 3 2 2
cc cc 4128 51.1 49 3.9e-01 6.3 -0.80 4 1 1 0 1 0 1 9 8 7 8 14 11 18 44 30 56 63 92 126 177 256 305 302 250 270 270 318 316 307 222 175 114 75 65 45 41 35 29 13 11 10 2 6 6 3 6 3 2 0 4
ac ac 4590 48.8 49 4.8e-01 7.7 -0.89 5 0 1 3 2 4 2 4 10 6 10 13 11 25 25 37 46 72 85 130 188 258 312 321 323 312 298 346 351 349 283 209 143 104 69 45 52 25 30 24 15 13 8 7 5 2 5 4 1 0 2
ca ca 5790 43.4 49 7.0e-01 11 -1.05 6 1 2 2 3 3 2 3 10 14 11 19 17 35 27 47 60 93 105 164 236 343 411 410 432 406 375 421 420 438 362 249 171 130 87 55 54 45 34 23 19 12 8 7 5 5 5 4 1 1 3
tc tc 4850 42.4 49 7.4e-01 12 -1.07 7 2 2 2 2 2 4 8 9 6 10 11 19 24 23 48 44 69 105 141 218 311 377 347 359 322 313 362 387 349 253 185 127 105 75 53 46 39 21 10 15 9 7 6 5 4 5 2 1 4 2
gc gc 4837 35.5 49 9.3e-01 15 -1.17 8 1 0 1 5 1 2 3 2 10 8 11 18 23 37 37 68 81 91 158 185 291 378 341 350 326 332 355 360 384 262 196 144 92 65 59 36 41 28 18 11 8 5 3 1 1 1 3 4 0 0
tg tg 5667 31.5 49 9.8e-01 16 -1.19 9 1 2 1 2 2 3 6 3 5 11 16 22 29 36 44 82 87 123 186 234 320 430 445 405 425 404 435 416 395 309 221 154 109 73 72 41 26 29 23 12 10 3 0 4 0 1 4 3 2 1
gt gt 4416 29.9 49 9.9e-01 16 -1.20 10 0 1 1 1 1 1 4 4 6 7 11 16 24 31 33 61 64 100 130 193 256 334 355 310 356 323 324 331 295 230 167 124 78 62 57 29 33 17 15 11 7 1 0 3 2 0 3 2 2 0
ga ga 5101 29.4 49 9.9e-01 16 -1.20 11 1 1 2 3 2 6 6 4 2 10 13 20 29 35 52 65 77 102 173 197 289 332 398 382 391 384 367 353 371 287 191 144 122 72 68 43 26 22 18 9 7 8 7 3 4 1 1 0 0 1
at at 7564 29.2 49 9.9e-01 16 -1.20 12 2 4 2 5 5 7 11 8 14 15 22 38 33 33 62 88 115 162 239 322 414 542 569 563 587 587 535 549 501 440 294 225 144 113 92 51 43 35 27 22 12 7 7 7 4 1 2 0 3 1
ta ta 5959 28.4 49 9.9e-01 16 -1.20 13 2 2 3 2 5 5 9 8 12 12 19 25 26 32 50 71 91 133 183 250 303 425 439 427 450 499 410 432 405 330 241 186 109 95 73 46 36 33 22 22 9 7 8 6 2 0 1 1 2 0
cg cg 3944 28.2 49 9.9e-01 16 -1.20 14 0 0 1 5 2 2 4 4 3 7 4 13 17 31 28 50 62 77 111 178 225 295 281 307 289 280 266 325 308 204 142 122 79 54 47 30 32 19 11 8 7 5 1 1 1 2 1 3 0 0
ag ag 4723 24.7 49 1.0e+00 16 -1.20 15 1 0 3 1 0 4 3 5 9 6 14 19 31 37 47 68 74 102 145 175 278 329 354 332 355 361 341 318 338 254 191 134 100 74 65 41 35 25 16 9 5 9 8 1 5 1 0 0 0 0
gg gg 4034 22.8 49 1.0e+00 16 -1.20 16 0 0 1 1 2 1 4 1 7 6 9 14 19 33 36 48 52 91 125 165 245 286 322 316 302 322 292 283 290 207 143 128 81 59 41 22 26 17 12 8 6 4 2 0 2 0 0 3 0 0 
 Host name	rsat
 Job started	2026-01-22.160307
 Job done	2026-01-22.160307
 Seconds	0.69
	user	0.69
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;	csystem	0