compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Program version 1.118 Quick mode Input files file2 $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/discovered_motifs/peak-motifs_motifs_discovered.tf Output files html_index $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html prefix $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/discovered_motifs/peak-motifs_motifs_disco_compa match_table_html $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/discovered_motifs/peak-motifs_motifs_disco_compa.html match_table_txt $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab alignments_1ton $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab Matrices file1 10 matrices $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 13 77 file1 2 12 240 file1 3 13 58 file1 4 23 2 file1 5 17 28 file1 6 18 37 file1 7 16 51 file1 8 22 4 file1 9 11 106 file1 10 14 61 file2 10 matrices $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 1 13 77 file2 2 12 240 file2 3 13 58 file2 4 23 2 file2 5 17 28 file2 6 18 37 file2 7 16 51 file2 8 22 4 file2 9 11 106 file2 10 14 61 Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_test_vs_ctrl_m1 | oligos_6nt_test_vs_ctrl_m1 | oligos_6nt_test_vs_ctrl_m1 | oligos_6nt_test_vs_ctrl_m1 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_test_vs_ctrl_m5 | oligos_7nt_test_vs_ctrl_m5 | oligos_7nt_test_vs_ctrl_m5 | oligos_7nt_test_vs_ctrl_m5 | 1.000 | 1.000 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_test_vs_ctrl_m2 | oligos_7nt_test_vs_ctrl_m2 | oligos_7nt_test_vs_ctrl_m2 | oligos_7nt_test_vs_ctrl_m2 | 1.000 | 1.000 | 16 | 16 | 16 | 16 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_test_vs_ctrl_m4 | oligos_7nt_test_vs_ctrl_m4 | oligos_7nt_test_vs_ctrl_m4 | oligos_7nt_test_vs_ctrl_m4 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_test_vs_ctrl_m5 | oligos_6nt_test_vs_ctrl_m5 | oligos_6nt_test_vs_ctrl_m5 | oligos_6nt_test_vs_ctrl_m5 | 1.000 | 1.000 | 17 | 17 | 17 | 17 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_test_vs_ctrl_m3 | oligos_6nt_test_vs_ctrl_m3 | oligos_6nt_test_vs_ctrl_m3 | oligos_6nt_test_vs_ctrl_m3 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_test_vs_ctrl_m1 | oligos_7nt_test_vs_ctrl_m1 | oligos_7nt_test_vs_ctrl_m1 | oligos_7nt_test_vs_ctrl_m1 | 1.000 | 1.000 | 18 | 18 | 18 | 18 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_test_vs_ctrl_m2 | oligos_6nt_test_vs_ctrl_m2 | oligos_6nt_test_vs_ctrl_m2 | oligos_6nt_test_vs_ctrl_m2 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_test_vs_ctrl_m4 | oligos_6nt_test_vs_ctrl_m4 | oligos_6nt_test_vs_ctrl_m4 | oligos_6nt_test_vs_ctrl_m4 | 1.000 | 1.000 | 23 | 23 | 23 | 23 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_test_vs_ctrl_m3 | oligos_7nt_test_vs_ctrl_m3 | oligos_7nt_test_vs_ctrl_m3 | oligos_7nt_test_vs_ctrl_m3 | 1.000 | 1.000 | 22 | 22 | 22 | 22 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
Host name rsat Job started 2026-01-22.160335 Job done 2026-01-22.160338 Seconds 0.22 user 0.22 system 0.1 cuser 2.53 ; csystem 0.46