One-to-n alignments
Command: compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/22/peak-motifs.2026-01-22.160303_2026-01-22.160303_u5bAOc/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1) |
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; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=18; shift=0; ncol=18; dwtATAAAAAAAgAtgma
; Alignment reference
a 10 12 7 31 2 29 33 29 30 34 32 31 7 32 8 5 11 15
c 3 2 4 2 0 3 1 4 0 1 0 0 4 2 0 1 11 9
g 11 7 3 2 3 2 1 2 1 1 0 1 23 2 6 25 7 9
t 13 16 23 2 32 3 2 2 6 1 5 5 3 1 23 6 8 4
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| oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1) |
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; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/1; ncol2=18; w=0; offset=0; strand=D; shift=0; score= 1; dwtATAAAAAAAgAtgma
; cor=; Ncor=
a 10 12 7 31 2 29 33 29 30 34 32 31 7 32 8 5 11 15
c 3 2 4 2 0 3 1 4 0 1 0 0 4 2 0 1 11 9
g 11 7 3 2 3 2 1 2 1 1 0 1 23 2 6 25 7 9
t 13 16 23 2 32 3 2 2 6 1 5 5 3 1 23 6 8 4
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2) |
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; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=16; shift=0; ncol=16; hrgcTGAAAAACAtmw
; Alignment reference
a 13 14 9 8 10 3 45 45 40 46 44 1 46 11 14 21
c 13 12 6 34 2 3 2 0 1 2 4 44 2 7 16 9
g 11 13 32 4 1 42 1 3 2 1 2 3 1 8 9 8
t 14 12 4 5 38 3 3 3 8 2 1 3 2 25 12 13
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| oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2) |
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; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/1; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; hrgcTGAAAAACAtmw
; cor=; Ncor=
a 13 14 9 8 10 3 45 45 40 46 44 1 46 11 14 21
c 13 12 6 34 2 3 2 0 1 2 4 44 2 7 16 9
g 11 13 32 4 1 42 1 3 2 1 2 3 1 8 9 8
t 14 12 4 5 38 3 3 3 8 2 1 3 2 25 12 13
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One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4) |
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; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=23; shift=0; ncol=23; ArCTGAAyrTGTmyAAwkwwryk
; Alignment reference
a 2 1 0 0 0 2 2 0 1 0 0 0 1 0 2 2 1 0 1 1 1 0 0
c 0 0 2 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0
g 0 1 0 0 2 0 0 0 1 0 2 0 0 0 0 0 0 1 0 0 1 0 1
t 0 0 0 2 0 0 0 1 0 2 0 2 0 1 0 0 1 1 1 1 0 1 1
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| oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4) |
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; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/1; ncol2=23; w=0; offset=0; strand=D; shift=0; score= 1; ArCTGAAyrTGTmyAAwkwwryk
; cor=; Ncor=
a 2 1 0 0 0 2 2 0 1 0 0 0 1 0 2 2 1 0 1 1 1 0 0
c 0 0 2 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0
g 0 1 0 0 2 0 0 0 1 0 2 0 0 0 0 0 0 1 0 0 1 0 1
t 0 0 0 2 0 0 0 1 0 2 0 2 0 1 0 0 1 1 1 1 0 1 1
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5) |
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; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=14; shift=0; ncol=14; wwTAAAATATAAaa
; Alignment reference
a 24 27 3 55 50 54 58 4 61 6 47 50 28 22
c 10 11 1 0 4 4 1 1 0 5 4 1 10 12
g 11 7 0 3 4 1 0 6 0 4 4 3 12 13
t 16 16 57 3 3 2 2 50 0 46 6 7 11 14
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| oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5) |
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; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/1; ncol2=14; w=0; offset=0; strand=D; shift=0; score= 1; wwTAAAATATAAaa
; cor=; Ncor=
a 24 27 3 55 50 54 58 4 61 6 47 50 28 22
c 10 11 1 0 4 4 1 1 0 5 4 1 10 12
g 11 7 0 3 4 1 0 6 0 4 4 3 12 13
t 16 16 57 3 3 2 2 50 0 46 6 7 11 14
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One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5) |
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; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=17; shift=0; ncol=17; kkTaTTGTAAATGTTww
; Alignment reference
a 5 6 2 18 3 3 2 2 20 23 24 1 3 0 1 15 13
c 5 5 2 2 0 3 2 1 1 1 0 4 0 2 3 1 4
g 7 9 1 4 3 0 22 0 3 3 1 1 23 1 3 5 3
t 11 8 23 4 22 22 2 25 4 1 3 22 2 25 21 7 8
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| oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5) |
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; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/1; ncol2=17; w=0; offset=0; strand=D; shift=0; score= 1; kkTaTTGTAAATGTTww
; cor=; Ncor=
a 5 6 2 18 3 3 2 2 20 23 24 1 3 0 1 15 13
c 5 5 2 2 0 3 2 1 1 1 0 4 0 2 3 1 4
g 7 9 1 4 3 0 22 0 3 3 1 1 23 1 3 5 3
t 11 8 23 4 22 22 2 25 4 1 3 22 2 25 21 7 8
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One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
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| oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3) |
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; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=13; shift=0; ncol=13; gkCTGAATATAwh
; Alignment reference
a 13 13 4 7 4 52 51 3 54 0 51 21 18
c 14 9 50 3 3 0 1 4 0 1 1 10 18
g 18 20 3 0 50 4 3 3 3 0 5 11 6
t 13 16 1 48 1 2 3 48 1 57 1 16 16
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| oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3) |
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; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/1; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; gkCTGAATATAwh
; cor=; Ncor=
a 13 13 4 7 4 52 51 3 54 0 51 21 18
c 14 9 50 3 3 0 1 4 0 1 1 10 18
g 18 20 3 0 50 4 3 3 3 0 5 11 6
t 13 16 1 48 1 2 3 48 1 57 1 16 16
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One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2) |
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; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=12; shift=0; ncol=12; wwTTAATTAAww
; Alignment reference
a 84 84 12 11 199 206 22 30 221 217 73 81
c 31 33 3 2 7 8 4 4 6 8 50 46
g 46 50 8 5 4 4 8 6 2 3 33 31
t 79 73 217 222 30 22 206 200 11 12 84 82
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| oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2) |
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; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/1; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; wwTTAATTAAww
; cor=; Ncor=
a 84 84 12 11 199 206 22 30 221 217 73 81
c 31 33 3 2 7 8 4 4 6 8 50 46
g 46 50 8 5 4 4 8 6 2 3 33 31
t 79 73 217 222 30 22 206 200 11 12 84 82
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One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
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| oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1) |
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; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=13; shift=0; ncol=13; wwATTTGATAAww
; Alignment reference
a 25 25 59 5 7 2 5 71 4 72 70 29 25
c 13 16 4 3 4 0 4 1 1 0 2 14 14
g 17 14 4 4 5 0 63 1 1 3 1 13 18
t 22 22 10 65 61 75 5 4 71 2 4 21 20
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| oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1) |
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; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/1; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; wwATTTGATAAww
; cor=; Ncor=
a 25 25 59 5 7 2 5 71 4 72 70 29 25
c 13 16 4 3 4 0 4 1 1 0 2 14 14
g 17 14 4 4 5 0 63 1 1 3 1 13 18
t 22 22 10 65 61 75 5 4 71 2 4 21 20
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
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| oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4) |
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; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=11; shift=0; ncol=11; wrACAAAAAka
; Alignment reference
a 39 31 106 0 98 93 93 96 104 26 48
c 14 22 0 106 0 3 2 1 1 26 19
g 21 29 0 0 1 5 3 5 1 27 16
t 32 24 0 0 7 5 8 4 0 27 23
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| oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4) |
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; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; wrACAAAAAka
; cor=; Ncor=
a 39 31 106 0 98 93 93 96 104 26 48
c 14 22 0 106 0 3 2 1 1 26 19
g 21 29 0 0 1 5 3 5 1 27 16
t 32 24 0 0 7 5 8 4 0 27 23
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3) |
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; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=22; shift=0; ncol=22; wdsCTGAmWRdhYWkTCAGshw
; Alignment reference
a 2 1 0 0 0 0 4 2 3 3 1 1 0 1 0 0 0 4 0 0 2 2
c 0 0 2 4 0 0 0 2 0 0 0 2 1 0 0 0 4 0 0 2 1 0
g 0 1 2 0 0 4 0 0 0 1 2 0 0 0 2 0 0 0 4 2 0 0
t 2 2 0 0 4 0 0 0 1 0 1 1 3 3 2 4 0 0 0 0 1 2
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| oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3) |
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; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/1; ncol2=22; w=0; offset=0; strand=D; shift=0; score= 1; wdsCTGAmWRdhYWkTCAGshw
; cor=; Ncor=
a 2 1 0 0 0 0 4 2 3 3 1 1 0 1 0 0 0 4 0 0 2 2
c 0 0 2 4 0 0 0 2 0 0 0 2 1 0 0 0 4 0 0 2 1 0
g 0 1 2 0 0 4 0 0 0 1 2 0 0 0 2 0 0 0 4 2 0 0
t 2 2 0 0 4 0 0 0 1 0 1 1 3 3 2 4 0 0 0 0 1 2
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