position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title Merged -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 5196 Sum of sequence lengths 3095499 Min sequence length 0 Max sequence length 1000 Average sequence length 595 Possible positions 3095499 Oligonucleotide statistics: Total occurrences 3091821 Position interval parameters: Position interval 20 Number of windows 50 Total positions 3095499 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 910 17618 2 -24 [-479,-460] -469.5 994 19100 3 -23 [-459,-440] -449.5 1075 20743 4 -22 [-439,-420] -429.5 1166 22523 5 -21 [-419,-400] -409.5 1286 24612 6 -20 [-399,-380] -389.5 1396 26774 7 -19 [-379,-360] -369.5 1547 29536 8 -18 [-359,-340] -349.5 1688 32474 9 -17 [-339,-320] -329.5 1861 35427 10 -16 [-319,-300] -309.5 2076 39345 11 -15 [-299,-280] -289.5 2280 43683 12 -14 [-279,-260] -269.5 2558 48607 13 -13 [-259,-240] -249.5 2873 54481 14 -12 [-239,-220] -229.5 3256 61297 15 -11 [-219,-200] -209.5 3730 70170 16 -10 [-199,-180] -189.5 4304 80606 17 -9 [-179,-160] -169.5 4922 92773 18 -8 [-159,-140] -149.5 5196 102732 19 -7 [-139,-120] -129.5 5196 103920 20 -6 [-119,-100] -109.5 5196 103920 21 -5 [-99,-80] -89.5 5196 103920 22 -4 [-79,-60] -69.5 5196 103920 23 -3 [-59,-40] -49.5 5196 103920 24 -2 [-39,-20] -29.5 5196 103920 25 -1 [-19,0] -9.5 5196 103920 26 0 [1,20] 10.5 5196 103920 27 1 [21,40] 30.5 5196 103920 28 2 [41,60] 50.5 5196 103920 29 3 [61,80] 70.5 5196 103920 30 4 [81,100] 90.5 5196 103920 31 5 [101,120] 110.5 5196 103920 32 6 [121,140] 130.5 5196 103920 33 7 [141,160] 150.5 5196 102467 34 8 [161,180] 170.5 4885 92180 35 9 [181,200] 190.5 4266 80022 36 10 [201,220] 210.5 3705 69682 37 11 [221,240] 230.5 3228 60887 38 12 [241,260] 250.5 2854 54168 39 13 [261,280] 270.5 2543 48319 40 14 [281,300] 290.5 2272 43491 41 15 [301,320] 310.5 2059 39151 42 16 [321,340] 330.5 1847 35248 43 17 [341,360] 350.5 1680 32330 44 18 [361,380] 370.5 1537 29374 45 19 [381,400] 390.5 1389 26652 46 20 [401,420] 410.5 1279 24487 47 21 [421,440] 430.5 1162 22429 48 22 [441,460] 450.5 1072 20656 49 23 [461,480] 470.5 987 19017 50 24 [481,500] 490.5 905 17558 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 740116 | 232.4 | 49 | 1.2e-25 | 4.7e-25 | 24.33 | 1 | 4193 | 4367 | 4761 | 5281 | 5708 | 6296 | 6890 | 7698 | 8316 | 9246 | 10360 | 11497 | 12749 | 14378 | 16635 | 19360 | 22015 | 24827 | 25001 | 25155 | 25032 | 25173 | 25536 | 25405 | 25252 | 25323 | 25334 | 25393 | 25323 | 25181 | 25246 | 25063 | 24319 | 21840 | 18669 | 16409 | 14340 | 12705 | 11374 | 10174 | 9237 | 8208 | 7542 | 6935 | 6265 | 5695 | 5105 | 4791 | 4445 | 4069 |
| a | a | 807364 | 205.1 | 49 | 5.3e-21 | 2.1e-20 | 19.67 | 2 | 4740 | 5195 | 5565 | 6069 | 6503 | 6980 | 7940 | 8493 | 9358 | 10373 | 11511 | 12715 | 14505 | 16118 | 18472 | 21230 | 24400 | 26625 | 26938 | 26936 | 26767 | 26676 | 26686 | 26609 | 26701 | 26762 | 26756 | 26526 | 26556 | 27059 | 26820 | 26777 | 26402 | 23999 | 21199 | 18116 | 16143 | 14320 | 12816 | 11531 | 10319 | 9531 | 8683 | 7811 | 7087 | 6644 | 6114 | 5536 | 5080 | 4672 |
| t | t | 806055 | 177.4 | 49 | 1.9e-16 | 7.7e-16 | 15.11 | 3 | 4617 | 5127 | 5515 | 5994 | 6693 | 7219 | 7731 | 8672 | 9446 | 10500 | 11409 | 12857 | 14271 | 15986 | 18285 | 21037 | 24275 | 26666 | 27149 | 26617 | 27124 | 26743 | 26543 | 26600 | 26652 | 26426 | 26563 | 26673 | 26890 | 26523 | 26822 | 26975 | 26808 | 24207 | 21064 | 18440 | 15909 | 14266 | 12694 | 11472 | 10343 | 9159 | 8538 | 7740 | 7067 | 6344 | 6088 | 5491 | 5075 | 4750 |
| g | g | 738286 | 152.0 | 49 | 1.8e-12 | 7.2e-12 | 11.14 | 4 | 4068 | 4411 | 4902 | 5179 | 5708 | 6279 | 6975 | 7611 | 8307 | 9207 | 10383 | 11531 | 12918 | 14762 | 16735 | 18938 | 22009 | 24512 | 24753 | 25115 | 24867 | 25148 | 24972 | 25181 | 25195 | 25291 | 25182 | 25212 | 25010 | 24983 | 24856 | 24941 | 24731 | 21932 | 19027 | 16642 | 14403 | 12811 | 11371 | 10240 | 9175 | 8290 | 7507 | 6796 | 6165 | 5740 | 5062 | 4809 | 4397 | 4047 |
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