/var/www/html/rsat/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title Merged -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	5196
	Sum of sequence lengths      	3095499
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	595
	Possible positions           	3090303
 Oligonucleotide statistics:
	Total occurrences    	3086572
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	3090303
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	910	17618
	2	-24	[-479,-460]	-469.5	994	19100
	3	-23	[-459,-440]	-449.5	1075	20743
	4	-22	[-439,-420]	-429.5	1166	22523
	5	-21	[-419,-400]	-409.5	1286	24612
	6	-20	[-399,-380]	-389.5	1396	26774
	7	-19	[-379,-360]	-369.5	1547	29536
	8	-18	[-359,-340]	-349.5	1688	32474
	9	-17	[-339,-320]	-329.5	1861	35427
	10	-16	[-319,-300]	-309.5	2076	39345
	11	-15	[-299,-280]	-289.5	2280	43683
	12	-14	[-279,-260]	-269.5	2558	48607
	13	-13	[-259,-240]	-249.5	2873	54481
	14	-12	[-239,-220]	-229.5	3256	61297
	15	-11	[-219,-200]	-209.5	3730	70170
	16	-10	[-199,-180]	-189.5	4304	80606
	17	-9	[-179,-160]	-169.5	4922	92773
	18	-8	[-159,-140]	-149.5	5196	102732
	19	-7	[-139,-120]	-129.5	5196	103920
	20	-6	[-119,-100]	-109.5	5196	103920
	21	-5	[-99,-80]	-89.5	5196	103920
	22	-4	[-79,-60]	-69.5	5196	103920
	23	-3	[-59,-40]	-49.5	5196	103920
	24	-2	[-39,-20]	-29.5	5196	103920
	25	-1	[-19,0]	-9.5	5196	103920
	26	0	[1,20]	10.5	5196	103920
	27	1	[21,40]	30.5	5196	103920
	28	2	[41,60]	50.5	5196	103920
	29	3	[61,80]	70.5	5196	103920
	30	4	[81,100]	90.5	5196	103920
	31	5	[101,120]	110.5	5196	103920
	32	6	[121,140]	130.5	5196	103920
	33	7	[141,160]	150.5	5196	102156
	34	8	[161,180]	170.5	4873	91561
	35	9	[181,200]	190.5	4251	79461
	36	10	[201,220]	210.5	3694	69205
	37	11	[221,240]	230.5	3225	60513
	38	12	[241,260]	250.5	2852	53857
	39	13	[261,280]	270.5	2536	48048
	40	14	[281,300]	290.5	2268	43278
	41	15	[301,320]	310.5	2054	38939
	42	16	[321,340]	330.5	1843	35081
	43	17	[341,360]	350.5	1677	32187
	44	18	[361,380]	370.5	1532	29226
	45	19	[381,400]	390.5	1384	26542
	46	20	[401,420]	410.5	1278	24370
	47	21	[421,440]	430.5	1158	22339
	48	22	[441,460]	450.5	1071	20571
	49	23	[461,480]	470.5	985	18935
	50	24	[481,500]	490.5	903	16653

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
aa aa 256561 357.4 49 1.9e-48 3.1e-47 46.51 1 1552 1717 1850 2017 2088 2245 2581 2733 3017 3373 3716 4002 4796 5195 5935 6786 7683 8424 8301 8496 8435 8377 8356 8262 8238 8353 8488 8234 8326 8463 8510 8398 8282 7617 6811 5761 5254 4560 4102 3726 3285 3165 2916 2559 2294 2293 2048 1772 1678 1491
tt tt 255606 263.0 49 4.7e-31 7.5e-30 29.13 2 1469 1655 1822 1963 2205 2376 2537 2859 3098 3469 3630 4047 4522 5046 5968 6675 7691 8437 8494 8194 8626 8471 8271 8240 8384 8199 8193 8354 8472 8355 8566 8531 8444 7607 6677 5860 5004 4526 4200 3646 3354 2929 2773 2487 2314 2042 2009 1764 1683 1468
ta ta 148425 244.6 49 8.5e-28 1.4e-26 25.86 3 904 983 1050 1112 1279 1386 1451 1656 1804 1985 2163 2393 2681 3062 3317 3907 4459 4887 5096 4921 4933 4725 4697 4781 4830 4794 4750 4782 4755 4829 4849 4770 4857 4484 3950 3451 3036 2763 2345 2172 1945 1764 1628 1489 1333 1189 1198 1059 901 870
cc cc 166692 218.4 49 3.0e-23 4.8e-22 21.32 4 951 882 998 1171 1227 1428 1480 1725 1757 2031 2309 2544 2775 3155 3724 4319 4906 5596 5695 5638 5766 5655 5911 5856 5828 5749 5694 5697 5872 5687 5930 5780 5430 4903 4206 3688 3248 2768 2523 2358 2086 1838 1707 1603 1361 1271 1089 1055 954 868
gc gc 218704 194.3 49 3.4e-19 5.4e-18 17.27 5 1135 1280 1420 1529 1634 1796 2052 2232 2479 2772 3042 3408 3797 4316 4914 5581 6432 7298 7245 7501 7384 7581 7607 7674 7535 7737 7692 7670 7483 7474 7384 7353 7277 6461 5427 4820 4287 3842 3303 2917 2682 2368 2202 1940 1818 1678 1430 1369 1317 1129
cg cg 175611 155.2 49 5.8e-13 9.2e-12 11.03 6 920 1030 1157 1224 1331 1490 1614 1849 1990 2209 2441 2739 3069 3550 3881 4544 5062 5925 5803 6133 6000 6083 6051 6074 6129 6176 6173 6174 5969 5942 5960 5933 5793 5089 4424 3886 3342 3020 2611 2351 2186 1939 1778 1562 1491 1307 1229 1112 983 883
at at 200346 142.8 49 4.2e-11 6.8e-10 9.17 7 1171 1301 1385 1555 1660 1789 1957 2121 2376 2604 2831 3303 3554 4045 4556 5294 6091 6570 6688 6714 6743 6508 6500 6610 6626 6552 6543 6456 6547 6580 6564 6676 6542 6038 5344 4602 4044 3607 3129 2900 2606 2410 2146 1889 1734 1586 1583 1396 1205 1115
gg gg 165072 118.7 49 1.0e-07 1.7e-06 5.78 8 946 958 1114 1121 1284 1432 1581 1708 1855 2023 2364 2528 2865 3316 3823 4256 4923 5485 5608 5687 5648 5655 5576 5661 5711 5636 5605 5700 5620 5635 5715 5576 5487 4810 4257 3727 3187 2805 2592 2191 2002 1901 1626 1501 1322 1253 1048 1050 904 794
ct ct 177680 76.9 49 6.6e-03 0.11 0.97 9 1039 1107 1166 1256 1412 1538 1646 1860 2109 2195 2534 2889 3147 3468 4007 4726 5402 5990 6062 6015 6097 5973 6063 5986 5900 5970 6050 6070 6142 5941 5970 5979 5934 5305 4355 4006 3445 3086 2715 2387 2136 1878 1754 1685 1540 1340 1213 1121 1110 961
tc tc 182553 69.8 49 2.7e-02 0.44 0.36 10 1067 1128 1188 1325 1480 1602 1684 1912 2094 2286 2553 2925 3190 3545 4061 4874 5463 6185 6260 6201 6232 6154 6219 6224 6127 6117 6184 6314 6362 6178 6097 6232 6094 5357 4584 4030 3419 3043 2733 2518 2283 2013 1824 1708 1553 1365 1305 1195 1085 981
ca ca 218952 63.2 49 8.3e-02 1.3 -0.12 11 1283 1348 1440 1630 1738 1840 2150 2264 2460 2810 3076 3325 3758 4204 5023 5770 6645 7315 7441 7368 7168 7461 7511 7489 7395 7428 7416 7452 7339 7610 7386 7367 7090 6405 5570 4721 4230 3764 3470 3031 2773 2500 2276 2059 1843 1754 1559 1479 1380 1138
ac ac 170814 54.8 49 2.6e-01 4.2 -0.63 12 1001 1091 1167 1233 1398 1465 1668 1848 1935 2164 2491 2594 3027 3310 3908 4567 5212 5732 5831 5800 5686 5727 5821 5682 5758 5740 5718 5703 5610 5829 5841 5683 5462 4957 4351 3691 3343 2977 2703 2331 2177 1926 1780 1669 1530 1305 1240 1185 1055 892
ag ag 178590 52.0 49 3.6e-01 5.7 -0.76 13 1016 1086 1163 1264 1357 1481 1734 1791 2030 2232 2473 2816 3128 3568 4073 4583 5414 5899 6117 5925 5903 6064 6009 6055 6079 6117 6006 6133 6072 6187 5905 6019 6060 5293 4571 3965 3411 3116 2827 2523 2220 2000 1815 1667 1510 1434 1226 1169 1129 955
ga ga 181783 44.9 49 6.4e-01 10 -1.01 14 1020 1121 1227 1286 1368 1538 1722 1871 2049 2189 2533 2948 3250 3688 4164 4728 5491 6069 6091 6163 6169 6178 6066 6120 6196 6188 6092 6094 6132 6190 6035 6231 6117 5338 4688 4100 3499 3144 2817 2600 2232 2066 1838 1658 1568 1404 1293 1193 1096 925
tg tg 217869 39.1 49 8.4e-01 13 -1.13 15 1177 1361 1455 1594 1729 1855 2059 2245 2450 2760 3063 3491 3878 4333 4939 5580 6661 7157 7299 7300 7333 7393 7356 7353 7311 7316 7436 7222 7300 7158 7309 7441 7328 6545 5678 4943 4335 3823 3324 3080 2704 2399 2272 2010 1829 1716 1543 1448 1386 1192
gt gt 171314 30.9 49 9.8e-01 16 -1.20 16 967 1052 1141 1243 1422 1513 1620 1800 1924 2223 2444 2647 3005 3442 3834 4372 5162 5659 5808 5764 5663 5734 5722 5726 5753 5730 5793 5747 5774 5684 5722 5780 5750 5150 4503 3878 3336 2947 2589 2472 2191 1925 1792 1647 1433 1369 1266 1175 1049 972 
 Host name	rsat
 Job started	2026-01-25.180902
 Job done	2026-01-25.180920
 Seconds	18.58
	user	18.58
	system	0
	cuser	0.01
;	csystem	0