One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: dyads_m3_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m3_shift0 (dyads_m3) |
 |
|
|
; dyads_m3; m=0 (reference); ncol1=15; shift=0; ncol=15; wwgAAAATAAAATwa
; Alignment reference
a 1375 1173 631 3213 3485 3462 3232 529 3099 3390 3399 3218 583 1306 1421
c 686 751 288 192 94 75 113 307 206 125 117 123 266 688 687
g 714 767 2477 174 78 69 124 275 228 103 98 139 213 752 732
t 999 1083 378 195 117 168 305 2663 241 156 160 294 2712 1028 934
|
| hb_shift0 (hb) |
 |
|
|
; dyads_m3 versus hb; m=1/1; ncol2=9; w=0; offset=0; strand=D; shift=0; score=0.42808; mayAAAAAa------
; cor=; Ncor=
a 30.2913 47.4563 1.00971 96.932 101.981 104 97.9417 102.99 68.6602 0 0 0 0 0 0
c 49.4757 16.1553 29.2816 1.00971 1.00971 0 1.00971 1.00971 8.07767 0 0 0 0 0 0
g 21.2039 17.165 11.1068 4.03883 0 0 4.03883 0 12.1165 0 0 0 0 0 0
t 3.02913 23.2233 62.6019 2.01942 1.00971 0 1.00971 0 15.1456 0 0 0 0 0 0
|