One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/discovered_motifs/dyads_m7/peak-motifs_dyads_m7.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/discovered_motifs/dyads_m7/peak-motifs_dyads_m7_vs_db_DMMPMM_drosophila

One-to-n matrix alignment; reference matrix: dyads_m7_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m7_shift0 (dyads_m7)				; dyads_m7; m=0 (reference); ncol1=10; shift=0; ncol=10; ygCCGCCGmc ; Alignment reference a 516 670 7 1 41 29 3 4 730 692 c 903 398 2819 2827 22 2775 2826 0 961 1043 g 624 1071 0 2 2713 1 2 2816 573 474 t 789 693 6 2 56 27 1 12 568 623
brk_shift1 (brk)				; dyads_m7 versus brk; m=1/1; ncol2=7; w=0; offset=1; strand=D; shift=1; score=0.496144; -rGCGCCr-- ; cor=; Ncor= a 0 4.4 2.2 0 0 0 0 5.5 0 0 c 0 0 0 9.9 0 11 11 0 0 0 g 0 6.6 8.8 0 9.9 0 0 5.5 0 0 t 0 0 0 1.1 1.1 0 0 0 0 0