One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/discovered_motifs/positions_6-8nt_m8/peak-motifs_positions_6-8nt_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/discovered_motifs/positions_6-8nt_m8/peak-motifs_positions_6-8nt_m8_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: positions_6-8nt_m8_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| positions_6-8nt_m8_shift0 (positions_6-8nt_m8) |
 |
|
|
; positions_6-8nt_m8; m=0 (reference); ncol1=16; shift=0; ncol=16; wwwAAATAAAAcAtww
; Alignment reference
a 1701 1831 1285 4250 4176 4182 427 4168 4114 4024 3938 1117 3360 1055 1903 1705
c 792 757 586 114 157 154 310 151 197 190 245 2186 378 512 756 819
g 832 925 545 129 87 138 193 123 110 140 165 415 370 511 776 790
t 1386 1198 2295 218 291 237 3781 269 290 357 363 993 603 2633 1276 1397
|
| hb_shift4 (hb) |
 |
|
|
; positions_6-8nt_m8 versus hb; m=1/1; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.432321; ----mayAAAAAa---
; cor=; Ncor=
a 0 0 0 0 30.2913 47.4563 1.00971 96.932 101.981 104 97.9417 102.99 68.6602 0 0 0
c 0 0 0 0 49.4757 16.1553 29.2816 1.00971 1.00971 0 1.00971 1.00971 8.07767 0 0 0
g 0 0 0 0 21.2039 17.165 11.1068 4.03883 0 0 4.03883 0 12.1165 0 0 0
t 0 0 0 0 3.02913 23.2233 62.6019 2.01942 1.00971 0 1.00971 0 15.1456 0 0 0
|