compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf Output files prefix $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila html_index $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_index.html alignments_1ton $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.tab match_table_txt $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.html match_table_html $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.html Matrices file1 30 matrices $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180830_2026-01-25.180830_qbHDLg/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 13 10353 file1 2 16 5099 file1 3 14 3546 file1 4 14 4514 file1 5 18 5298 file1 6 13 5736 file1 7 16 3102 file1 8 16 4711 file1 9 16 12265 file1 10 15 5684 file1 11 11 5555 ... 20 more matrices file2 41 matrices $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf file2 1 6 45.00005 file2 2 6 18 file2 3 6 14 file2 4 8 49.00004 file2 5 8 18.00005 file2 6 7 21 file2 7 11 16 file2 8 8 8 file2 9 7 11 file2 10 8 10 file2 11 9 13 ... 31 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6-8nt_m7 | en | oligos_6-8nt_m7 | en | 0.764 | 0.611 | 10 | 8 | 8 | 10 | 0.8000 | 0.8000 | 1.0000 | R | 1 |
| oligos_6-8nt_m8 | Eip74EF | oligos_6-8nt_m8 | Eip74EF | 0.810 | 0.589 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | D | 2 |
| oligos_6-8nt_m5 | z | oligos_6-8nt_m5 | z | 0.912 | 0.547 | 10 | 6 | 6 | 10 | 0.6000 | 0.6000 | 1.0000 | R | 1 |
| oligos_6-8nt_m7 | sd | oligos_6-8nt_m7 | sd | 0.771 | 0.533 | 10 | 12 | 9 | 13 | 0.6923 | 0.9000 | 0.7500 | R | 1 |
| dyads_m7 | brk | dyads_m7 | brk | 0.709 | 0.496 | 10 | 7 | 7 | 10 | 0.7000 | 0.7000 | 1.0000 | D | 1 |
| oligos_6-8nt_m7 | zen | oligos_6-8nt_m7 | zen | 0.808 | 0.485 | 10 | 6 | 6 | 10 | 0.6000 | 0.6000 | 1.0000 | D | 2 |
| oligos_6-8nt_m3 | br-Z1 | oligos_6-8nt_m3 | br-Z1 | 0.716 | 0.456 | 10 | 8 | 7 | 11 | 0.6364 | 0.7000 | 0.8750 | D | 3 |
| positions_6-8nt_m10 | hb | positions_6-8nt_m10 | hb | 0.731 | 0.439 | 15 | 9 | 9 | 15 | 0.6000 | 0.6000 | 1.0000 | D | 4 |
| positions_6-8nt_m2 | hb | positions_6-8nt_m2 | hb | 0.772 | 0.434 | 16 | 9 | 9 | 16 | 0.5625 | 0.5625 | 1.0000 | D | 4 |
| positions_6-8nt_m8 | hb | positions_6-8nt_m8 | hb | 0.769 | 0.432 | 16 | 9 | 9 | 16 | 0.5625 | 0.5625 | 1.0000 | D | 4 |
| dyads_m3 | hb | dyads_m3 | hb | 0.713 | 0.428 | 15 | 9 | 9 | 15 | 0.6000 | 0.6000 | 1.0000 | D | 0 |
| oligos_6-8nt_m7 | ap | oligos_6-8nt_m7 | ap | 0.703 | 0.422 | 10 | 6 | 6 | 10 | 0.6000 | 0.6000 | 1.0000 | D | 2 |
| positions_6-8nt_m4 | twi | positions_6-8nt_m4 | twi | 0.724 | 0.414 | 14 | 8 | 8 | 14 | 0.5714 | 0.5714 | 1.0000 | R | 4 |
| dyads_m8 | brk | dyads_m8 | brk | 0.735 | 0.401 | 10 | 7 | 6 | 11 | 0.5455 | 0.6000 | 0.8571 | D | -1 |
Host name rsat Job started 2026-01-25.181446 Job done 2026-01-25.181452 Seconds 1.34 user 1.34 system 0.2 cuser 4.09 ; csystem 0.62