position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title IDR -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 1188 Sum of sequence lengths 948317 Min sequence length 0 Max sequence length 1000 Average sequence length 798 Possible positions 948317 Oligonucleotide statistics: Total occurrences 947394 Position interval parameters: Position interval 20 Number of windows 50 Total positions 948317 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 512 9961 2 -24 [-479,-460] -469.5 551 10707 3 -23 [-459,-440] -449.5 588 11442 4 -22 [-439,-420] -429.5 633 12338 5 -21 [-419,-400] -409.5 662 12926 6 -20 [-399,-380] -389.5 698 13590 7 -19 [-379,-360] -369.5 749 14502 8 -18 [-359,-340] -349.5 802 15609 9 -17 [-339,-320] -329.5 843 16468 10 -16 [-319,-300] -309.5 885 17298 11 -15 [-299,-280] -289.5 944 18319 12 -14 [-279,-260] -269.5 1000 19513 13 -13 [-259,-240] -249.5 1054 20569 14 -12 [-239,-220] -229.5 1097 21518 15 -11 [-219,-200] -209.5 1150 22618 16 -10 [-199,-180] -189.5 1181 23339 17 -9 [-179,-160] -169.5 1188 23733 18 -8 [-159,-140] -149.5 1188 23760 19 -7 [-139,-120] -129.5 1188 23760 20 -6 [-119,-100] -109.5 1188 23760 21 -5 [-99,-80] -89.5 1188 23760 22 -4 [-79,-60] -69.5 1188 23760 23 -3 [-59,-40] -49.5 1188 23760 24 -2 [-39,-20] -29.5 1188 23760 25 -1 [-19,0] -9.5 1188 23760 26 0 [1,20] 10.5 1188 23760 27 1 [21,40] 30.5 1188 23760 28 2 [41,60] 50.5 1188 23760 29 3 [61,80] 70.5 1188 23760 30 4 [81,100] 90.5 1188 23760 31 5 [101,120] 110.5 1188 23760 32 6 [121,140] 130.5 1188 23760 33 7 [141,160] 150.5 1188 23760 34 8 [161,180] 170.5 1188 23725 35 9 [181,200] 190.5 1178 23302 36 10 [201,220] 210.5 1147 22564 37 11 [221,240] 230.5 1094 21473 38 12 [241,260] 250.5 1051 20508 39 13 [261,280] 270.5 999 19451 40 14 [281,300] 290.5 944 18254 41 15 [301,320] 310.5 883 17251 42 16 [321,340] 330.5 841 16420 43 17 [341,360] 350.5 800 15553 44 18 [361,380] 370.5 746 14449 45 19 [381,400] 390.5 695 13550 46 20 [401,420] 410.5 661 12906 47 21 [421,440] 430.5 630 12289 48 22 [441,460] 450.5 587 11405 49 23 [461,480] 470.5 549 10676 50 24 [481,500] 490.5 511 9931 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 246241 | 76.3 | 49 | 7.5e-03 | 0.03 | 1.52 | 1 | 2658 | 2869 | 2968 | 3266 | 3400 | 3520 | 3829 | 4149 | 4376 | 4502 | 4784 | 5219 | 5535 | 5573 | 6026 | 6197 | 6208 | 6046 | 6170 | 6200 | 5991 | 5975 | 6006 | 6081 | 6071 | 6263 | 6157 | 6113 | 6126 | 6055 | 6125 | 6067 | 6043 | 6054 | 6070 | 5817 | 5583 | 5259 | 5050 | 4704 | 4433 | 4335 | 4042 | 3810 | 3507 | 3373 | 3151 | 3072 | 2870 | 2543 |
| t | t | 245404 | 69.2 | 49 | 3.0e-02 | 0.12 | 0.92 | 2 | 2495 | 2714 | 3022 | 3183 | 3419 | 3508 | 3717 | 3926 | 4313 | 4510 | 4796 | 4930 | 5260 | 5540 | 5877 | 5997 | 6209 | 6383 | 6261 | 5949 | 6208 | 6219 | 6128 | 6117 | 6005 | 6133 | 6159 | 5982 | 5996 | 6171 | 6147 | 6156 | 6141 | 6263 | 6173 | 5913 | 5464 | 5279 | 4956 | 4770 | 4420 | 4283 | 4056 | 3712 | 3531 | 3287 | 3303 | 2984 | 2765 | 2674 |
| g | g | 227144 | 62.8 | 49 | 8.9e-02 | 0.35 | 0.45 | 3 | 2407 | 2609 | 2754 | 2945 | 3047 | 3252 | 3472 | 3724 | 3859 | 4048 | 4338 | 4575 | 4843 | 5158 | 5299 | 5516 | 5532 | 5511 | 5634 | 5773 | 5770 | 5688 | 5674 | 5657 | 5850 | 5641 | 5713 | 5764 | 5806 | 5893 | 5725 | 5790 | 5759 | 5661 | 5545 | 5452 | 5296 | 5019 | 4758 | 4391 | 4123 | 3907 | 3761 | 3452 | 3181 | 3169 | 2918 | 2660 | 2492 | 2333 |
| c | c | 228605 | 48.7 | 49 | 4.8e-01 | 1.9 | -0.29 | 4 | 2401 | 2515 | 2698 | 2944 | 3056 | 3290 | 3467 | 3810 | 3920 | 4238 | 4401 | 4789 | 4912 | 5227 | 5412 | 5610 | 5744 | 5786 | 5695 | 5820 | 5771 | 5859 | 5925 | 5865 | 5815 | 5699 | 5691 | 5861 | 5807 | 5627 | 5723 | 5701 | 5773 | 5695 | 5483 | 5360 | 5090 | 4895 | 4643 | 4356 | 4236 | 3882 | 3694 | 3475 | 3331 | 3077 | 2917 | 2689 | 2549 | 2381 |
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