/var/www/html/rsat/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title IDR -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	1188
	Sum of sequence lengths      	948317
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	798
	Possible positions           	947129
 Oligonucleotide statistics:
	Total occurrences    	946189
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	947129
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	512	9961
	2	-24	[-479,-460]	-469.5	551	10707
	3	-23	[-459,-440]	-449.5	588	11442
	4	-22	[-439,-420]	-429.5	633	12338
	5	-21	[-419,-400]	-409.5	662	12926
	6	-20	[-399,-380]	-389.5	698	13590
	7	-19	[-379,-360]	-369.5	749	14502
	8	-18	[-359,-340]	-349.5	802	15609
	9	-17	[-339,-320]	-329.5	843	16468
	10	-16	[-319,-300]	-309.5	885	17298
	11	-15	[-299,-280]	-289.5	944	18319
	12	-14	[-279,-260]	-269.5	1000	19513
	13	-13	[-259,-240]	-249.5	1054	20569
	14	-12	[-239,-220]	-229.5	1097	21518
	15	-11	[-219,-200]	-209.5	1150	22618
	16	-10	[-199,-180]	-189.5	1181	23339
	17	-9	[-179,-160]	-169.5	1188	23733
	18	-8	[-159,-140]	-149.5	1188	23760
	19	-7	[-139,-120]	-129.5	1188	23760
	20	-6	[-119,-100]	-109.5	1188	23760
	21	-5	[-99,-80]	-89.5	1188	23760
	22	-4	[-79,-60]	-69.5	1188	23760
	23	-3	[-59,-40]	-49.5	1188	23760
	24	-2	[-39,-20]	-29.5	1188	23760
	25	-1	[-19,0]	-9.5	1188	23760
	26	0	[1,20]	10.5	1188	23760
	27	1	[21,40]	30.5	1188	23760
	28	2	[41,60]	50.5	1188	23760
	29	3	[61,80]	70.5	1188	23760
	30	4	[81,100]	90.5	1188	23760
	31	5	[101,120]	110.5	1188	23760
	32	6	[121,140]	130.5	1188	23760
	33	7	[141,160]	150.5	1188	23760
	34	8	[161,180]	170.5	1188	23715
	35	9	[181,200]	190.5	1178	23271
	36	10	[201,220]	210.5	1146	22511
	37	11	[221,240]	230.5	1093	21430
	38	12	[241,260]	250.5	1051	20456
	39	13	[261,280]	270.5	998	19396
	40	14	[281,300]	290.5	941	18193
	41	15	[301,320]	310.5	883	17209
	42	16	[321,340]	330.5	841	16379
	43	17	[341,360]	350.5	799	15499
	44	18	[361,380]	370.5	746	14398
	45	19	[381,400]	390.5	695	13516
	46	20	[401,420]	410.5	661	12875
	47	21	[421,440]	430.5	629	12246
	48	22	[441,460]	450.5	587	11367
	49	23	[461,480]	470.5	549	10638
	50	24	[481,500]	490.5	510	9420

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 77493 119.2 49 8.8e-08 1.4e-06 5.85 1 742 862 979 1013 1060 1092 1197 1231 1392 1450 1540 1506 1582 1768 1910 1849 2009 2066 1962 1803 1943 2037 1986 1883 1860 1931 1928 1832 1870 1973 1947 1977 1965 2042 2040 1916 1657 1646 1590 1496 1369 1340 1292 1132 1166 996 1120 914 861 771
aa aa 77756 116.8 49 1.8e-07 2.9e-06 5.54 2 841 880 899 1058 1111 1083 1216 1331 1431 1404 1470 1685 1787 1755 1955 2060 1944 1892 1935 1988 1877 1805 1839 1891 1846 1999 1938 1914 1889 1891 1948 1903 1921 1917 1988 1802 1796 1586 1618 1486 1354 1425 1287 1206 1072 1088 1006 1016 961 762
gg gg 50352 103.9 49 8.1e-06 0.00013 3.89 3 600 579 627 667 681 761 807 867 864 878 973 978 1058 1185 1165 1222 1225 1171 1194 1262 1304 1211 1260 1170 1260 1176 1246 1256 1290 1345 1246 1308 1290 1246 1285 1203 1254 1143 1093 926 944 857 881 762 723 727 652 556 529 445
cg cg 55188 75.1 49 9.7e-03 0.16 0.81 4 559 617 654 690 702 786 825 918 914 1021 1021 1135 1118 1269 1254 1359 1357 1375 1359 1423 1376 1443 1482 1410 1521 1428 1402 1477 1406 1400 1428 1399 1444 1358 1323 1338 1209 1190 1162 1019 1051 959 862 807 746 737 713 621 594 527
cc cc 51094 72.1 49 1.7e-02 0.28 0.56 5 549 518 567 627 669 759 799 863 842 931 986 1078 1084 1128 1179 1254 1243 1332 1255 1322 1285 1295 1322 1311 1289 1208 1221 1374 1363 1215 1295 1284 1338 1321 1228 1193 1182 1104 996 985 958 852 842 821 785 737 640 592 562 511
gt gt 52752 65.7 49 5.5e-02 0.89 0.05 6 503 580 641 674 711 725 789 811 895 948 1026 1020 1122 1162 1227 1314 1178 1351 1362 1322 1324 1347 1346 1357 1325 1284 1383 1332 1361 1383 1408 1318 1313 1353 1292 1300 1228 1128 1061 1057 963 933 858 832 708 739 671 623 597 567
ac ac 52791 64.9 49 6.4e-02 1 -0.01 7 546 597 662 661 702 728 833 930 914 1023 1063 1105 1193 1225 1321 1277 1329 1277 1375 1299 1298 1373 1420 1308 1300 1356 1331 1302 1343 1242 1308 1307 1293 1245 1258 1229 1170 1125 1099 970 1013 864 847 827 786 734 627 636 611 509
gc gc 68987 63.6 49 7.8e-02 1.2 -0.10 8 708 798 810 901 911 958 1023 1108 1132 1275 1329 1453 1476 1569 1609 1658 1780 1705 1695 1817 1784 1807 1756 1807 1863 1766 1722 1802 1739 1756 1739 1780 1761 1700 1661 1639 1528 1534 1446 1310 1187 1137 1095 1000 937 935 856 819 748 658
ta ta 45696 62.9 49 8.8e-02 1.4 -0.15 9 504 536 562 573 639 655 712 757 819 881 906 972 1054 1044 1094 1109 1183 1215 1205 1099 1116 1105 1075 1090 1163 1147 1129 1124 1100 1113 1135 1086 1100 1115 1122 1150 1034 1021 894 881 804 771 765 702 616 633 567 607 523 489
tc tc 55423 60.2 49 1.3e-01 2.1 -0.32 10 603 576 685 747 775 837 819 901 1011 1016 1043 1148 1179 1268 1311 1424 1381 1456 1393 1375 1407 1402 1429 1452 1335 1390 1394 1399 1335 1405 1387 1345 1369 1412 1361 1261 1221 1131 1077 1073 1071 1014 888 825 810 687 745 633 627 590
at at 60539 49.7 49 4.5e-01 7.1 -0.85 11 680 711 749 812 847 935 919 992 1048 1078 1198 1289 1337 1343 1429 1537 1611 1557 1488 1498 1468 1434 1442 1494 1504 1551 1521 1484 1466 1478 1483 1539 1472 1532 1537 1441 1365 1299 1216 1130 1090 1091 1000 920 879 803 805 756 685 596
ct ct 54365 45.8 49 6.0e-01 9.7 -0.98 12 564 590 645 702 792 772 797 914 989 1010 1036 1118 1221 1280 1308 1322 1408 1429 1417 1359 1433 1396 1342 1370 1335 1344 1357 1321 1329 1345 1295 1333 1348 1346 1293 1249 1209 1183 1096 1070 979 912 888 811 781 709 727 672 623 596
tg tg 66429 45.7 49 6.1e-01 9.7 -0.99 13 646 740 796 850 945 924 989 1037 1091 1163 1307 1304 1445 1460 1562 1615 1636 1646 1701 1672 1742 1675 1636 1692 1647 1665 1708 1627 1691 1680 1678 1748 1707 1691 1640 1566 1540 1459 1382 1305 1167 1146 1093 1038 923 957 858 815 743 681
ca ca 67698 43.5 49 6.9e-01 11 -1.05 14 729 790 832 925 892 973 1046 1115 1175 1276 1358 1458 1488 1550 1671 1675 1736 1650 1664 1715 1677 1725 1779 1774 1670 1719 1711 1689 1709 1665 1705 1684 1642 1666 1635 1568 1482 1411 1375 1269 1239 1147 1093 1023 1015 889 826 800 760 633
ag ag 54900 42.3 49 7.4e-01 12 -1.07 15 591 681 658 735 740 774 861 896 983 997 1053 1140 1218 1250 1321 1323 1324 1320 1372 1415 1348 1363 1305 1388 1421 1356 1367 1413 1428 1444 1386 1318 1356 1357 1278 1335 1245 1237 1104 1107 968 947 898 845 767 744 705 656 609 553
ga ga 54726 37.1 49 8.9e-01 14 -1.16 16 596 652 676 703 744 808 853 938 968 947 1010 1124 1187 1242 1298 1320 1349 1284 1383 1372 1358 1323 1312 1323 1402 1414 1362 1374 1416 1409 1332 1384 1395 1362 1299 1298 1270 1202 1143 1075 1013 971 910 847 802 760 728 651 605 532 
 Host name	rsat
 Job started	2026-01-25.180915
 Job done	2026-01-25.180920
 Seconds	5.35
	user	5.35
	system	0.01
	cuser	0
;	csystem	0