One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/dyads_m6/peak-motifs_dyads_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/dyads_m6/peak-motifs_dyads_m6_vs_db_DMMPMM_drosophila

One-to-n matrix alignment; reference matrix: dyads_m6_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m6_shift0 (dyads_m6)				; dyads_m6; m=0 (reference); ncol1=12; shift=0; ncol=12; gyCGCCGCCGcc ; Alignment reference a 394 275 67 76 73 57 54 68 61 101 418 352 c 311 600 1501 24 1551 1549 27 1519 1558 83 634 660 g 617 420 65 1583 54 19 1622 84 26 1483 360 307 t 423 450 112 62 67 120 42 74 100 78 333 426
brk_shift0 (brk)				; dyads_m6 versus brk; m=1/2; ncol2=7; w=0; offset=0; strand=D; shift=0; score=0.483643; rGCGCCr----- ; cor=; Ncor= a 4.4 2.2 0 0 0 0 5.5 0 0 0 0 0 c 0 0 9.9 0 11 11 0 0 0 0 0 0 g 6.6 8.8 0 9.9 0 0 5.5 0 0 0 0 0 t 0 0 1.1 1.1 0 0 0 0 0 0 0 0
Med_shift3 (Med)				; dyads_m6 versus Med; m=2/2; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.460441; ---sCmssCsmm ; cor=; Ncor= a 0 0 0 1 0 5 0 0 0 0 3 4 c 0 0 0 2 8 3 3 4 7 3 5 4 g 0 0 0 5 0 0 4 4 1 5 0 0 t 0 0 0 0 0 0 1 0 0 0 0 0