One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/dyads_m7/peak-motifs_dyads_m7.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/dyads_m7/peak-motifs_dyads_m7_vs_db_DMMPMM_drosophila

One-to-n matrix alignment; reference matrix: dyads_m7_shift1 ; 2 matrices ; sort_field=Ncor

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m7_shift1 (dyads_m7)				; dyads_m7; m=0 (reference); ncol1=19; shift=1; ncol=20; -yyCTCyyyctcyyyCTCyy ; Alignment reference a 0 423 426 86 69 71 289 396 357 312 460 340 339 370 446 82 87 73 327 428 c 0 885 617 2072 75 2103 638 923 700 1137 411 1132 664 925 592 2073 77 2116 646 869 g 0 320 424 71 36 48 457 372 343 423 351 372 477 325 372 68 38 31 478 363 t 0 628 789 27 2076 34 872 565 856 384 1034 412 776 636 846 33 2054 36 805 596
Trl_shift0 (Trl)				; dyads_m7 versus Trl; m=1/1; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.427559; TtkykCTCtCtct------- ; cor=; Ncor= a 10 15 4 0 7 0 4 2 6 13 9 4 18 0 0 0 0 0 0 0 c 10 8 19 41 3 72 0 56 12 56 16 47 3 0 0 0 0 0 0 0 g 0 13 24 10 27 5 11 8 9 1 6 9 14 0 0 0 0 0 0 0 t 57 41 30 26 40 0 62 11 50 7 46 17 42 0 0 0 0 0 0 0