One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/dyads_m8/peak-motifs_dyads_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/dyads_m8/peak-motifs_dyads_m8_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: dyads_m8_shift1 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m8_shift1 (dyads_m8) |
 |
|
|
; dyads_m8; m=0 (reference); ncol1=10; shift=1; ncol=11; -ykGCCACCrv
; Alignment reference
a 0 176 193 19 7 0 866 0 0 272 236
c 0 246 210 15 856 862 0 867 867 169 251
g 0 192 222 822 2 1 0 0 0 223 218
t 0 253 242 11 2 4 1 0 0 203 162
|
| brk_shift0 (brk) |
 |
|
|
; dyads_m8 versus brk; m=1/1; ncol2=7; w=-1; offset=-1; strand=D; shift=0; score=0.406384; rGCGCCr----
; cor=; Ncor=
a 4.4 2.2 0 0 0 0 5.5 0 0 0 0
c 0 0 9.9 0 11 11 0 0 0 0 0
g 6.6 8.8 0 9.9 0 0 5.5 0 0 0 0
t 0 0 1.1 1.1 0 0 0 0 0 0 0
|