One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/oligos_6-8nt_m6/peak-motifs_oligos_6-8nt_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/oligos_6-8nt_m6/peak-motifs_oligos_6-8nt_m6_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: oligos_6-8nt_m6_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6-8nt_m6_shift0 (oligos_6-8nt_m6) |
 |
|
|
; oligos_6-8nt_m6; m=0 (reference); ncol1=12; shift=0; ncol=12; vmaATCGATtkb
; Alignment reference
a 458 571 1111 1593 40 41 81 1641 90 308 349 402
c 446 480 201 48 36 1597 41 44 32 139 360 455
g 454 362 141 30 44 41 1598 36 48 201 481 447
t 403 348 308 90 1641 82 41 40 1591 1113 571 457
|
| Dref_rc_shift1 (Dref_rc) |
 |
|
|
; oligos_6-8nt_m6 versus Dref_rc; m=1/1; ncol2=10; w=0; offset=1; strand=R; shift=1; score=0.631936; -yTATCGwTAt-
; cor=; Ncor=
a 0 0 0 10 0 0 0 6.66667 1.11111 7.77778 2.22222 0
c 0 6.66667 1.11111 0 0 8.88889 0 0 0 1.11111 0 0
g 0 0 1.11111 0 0 0 10 0 1.11111 0 1.11111 0
t 0 3.33333 7.77778 0 10 1.11111 0 3.33333 7.77778 1.11111 6.66667 0
|