compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Program version 1.118 Quick mode Input files file2 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/peak-motifs_motifs_discovered.tf Output files alignments_1ton $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab match_table_txt $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab prefix $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/peak-motifs_motifs_disco_compa match_table_html $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/peak-motifs_motifs_disco_compa.html html_index $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html Matrices file1 21 matrices $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 10 534 file1 2 13 1627 file1 3 17 2145 file1 4 13 2389 file1 5 14 1119 file1 6 14 1400 file1 7 12 1761 file1 8 13 1968 file1 9 14 2217 file1 10 11 2750 file1 11 12 1138 ... 11 more matrices file2 21 matrices $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 1 10 534 file2 2 13 1627 file2 3 17 2145 file2 4 13 2389 file2 5 14 1119 file2 6 14 1400 file2 7 12 1761 file2 8 13 1968 file2 9 14 2217 file2 10 11 2750 file2 11 12 1138 ... 11 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| dyads_m1 | dyads_m1 | dyads_m1 | dyads_m1 | 1.000 | 1.000 | 17 | 17 | 17 | 17 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m2 | oligos_6-8nt_m2 | oligos_6-8nt_m2 | oligos_6-8nt_m2 | 1.000 | 1.000 | 17 | 17 | 17 | 17 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m7 | oligos_6-8nt_m7 | oligos_6-8nt_m7 | oligos_6-8nt_m7 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m9 | dyads_m9 | dyads_m9 | dyads_m9 | 1.000 | 1.000 | 19 | 19 | 19 | 19 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m6 | oligos_6-8nt_m6 | oligos_6-8nt_m6 | oligos_6-8nt_m6 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m3 | oligos_6-8nt_m3 | oligos_6-8nt_m3 | oligos_6-8nt_m3 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m4 | oligos_6-8nt_m4 | oligos_6-8nt_m4 | oligos_6-8nt_m4 | 1.000 | 1.000 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m8 | oligos_6-8nt_m8 | oligos_6-8nt_m8 | oligos_6-8nt_m8 | 1.000 | 1.000 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m4 | dyads_m4 | dyads_m4 | dyads_m4 | 1.000 | 1.000 | 21 | 21 | 21 | 21 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m1 | oligos_6-8nt_m1 | oligos_6-8nt_m1 | oligos_6-8nt_m1 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m7 | dyads_m7 | dyads_m7 | dyads_m7 | 1.000 | 1.000 | 19 | 19 | 19 | 19 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m8 | dyads_m8 | dyads_m8 | dyads_m8 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m9 | oligos_6-8nt_m9 | oligos_6-8nt_m9 | oligos_6-8nt_m9 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m3 | dyads_m3 | dyads_m3 | dyads_m3 | 1.000 | 1.000 | 17 | 17 | 17 | 17 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m10 | oligos_6-8nt_m10 | oligos_6-8nt_m10 | oligos_6-8nt_m10 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m6 | dyads_m6 | dyads_m6 | dyads_m6 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m10 | dyads_m10 | dyads_m10 | dyads_m10 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m2 | dyads_m2 | dyads_m2 | dyads_m2 | 1.000 | 1.000 | 17 | 17 | 17 | 17 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6-8nt_m1 | positions_6-8nt_m1 | positions_6-8nt_m1 | positions_6-8nt_m1 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m5 | oligos_6-8nt_m5 | oligos_6-8nt_m5 | oligos_6-8nt_m5 | 1.000 | 1.000 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m5 | dyads_m5 | dyads_m5 | dyads_m5 | 1.000 | 1.000 | 24 | 24 | 24 | 24 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m2 | dyads_m1 | oligos_6-8nt_m2 | dyads_m1 | 0.966 | 0.858 | 17 | 17 | 16 | 18 | 0.8889 | 0.9412 | 0.9412 | D | 1 |
| dyads_m1 | oligos_6-8nt_m2 | dyads_m1 | oligos_6-8nt_m2 | 0.966 | 0.858 | 17 | 17 | 16 | 18 | 0.8889 | 0.9412 | 0.9412 | D | -1 |
| dyads_m10 | dyads_m8 | dyads_m10 | dyads_m8 | 0.777 | 0.777 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m8 | dyads_m10 | dyads_m8 | dyads_m10 | 0.777 | 0.777 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m8 | dyads_m2 | oligos_6-8nt_m8 | dyads_m2 | 0.871 | 0.717 | 14 | 17 | 14 | 17 | 0.8235 | 1.0000 | 0.8235 | R | 0 |
| dyads_m2 | oligos_6-8nt_m8 | dyads_m2 | oligos_6-8nt_m8 | 0.871 | 0.717 | 17 | 14 | 14 | 17 | 0.8235 | 0.8235 | 1.0000 | R | 3 |
| dyads_m1 | dyads_m5 | dyads_m1 | dyads_m5 | 0.987 | 0.699 | 17 | 24 | 17 | 24 | 0.7083 | 1.0000 | 0.7083 | D | 0 |
| dyads_m5 | dyads_m1 | dyads_m5 | dyads_m1 | 0.987 | 0.699 | 24 | 17 | 17 | 24 | 0.7083 | 0.7083 | 1.0000 | D | 0 |
| dyads_m4 | dyads_m9 | dyads_m4 | dyads_m9 | 0.816 | 0.668 | 21 | 19 | 18 | 22 | 0.8182 | 0.8571 | 0.9474 | D | -1 |
| dyads_m9 | dyads_m4 | dyads_m9 | dyads_m4 | 0.816 | 0.668 | 19 | 21 | 18 | 22 | 0.8182 | 0.9474 | 0.8571 | D | 1 |
| dyads_m5 | oligos_6-8nt_m2 | dyads_m5 | oligos_6-8nt_m2 | 0.937 | 0.664 | 24 | 17 | 17 | 24 | 0.7083 | 0.7083 | 1.0000 | D | 1 |
| oligos_6-8nt_m2 | dyads_m5 | oligos_6-8nt_m2 | dyads_m5 | 0.937 | 0.664 | 17 | 24 | 17 | 24 | 0.7083 | 1.0000 | 0.7083 | D | -1 |
| dyads_m9 | oligos_6-8nt_m3 | dyads_m9 | oligos_6-8nt_m3 | 0.931 | 0.637 | 19 | 13 | 13 | 19 | 0.6842 | 0.6842 | 1.0000 | D | 6 |
| oligos_6-8nt_m3 | dyads_m9 | oligos_6-8nt_m3 | dyads_m9 | 0.931 | 0.637 | 13 | 19 | 13 | 19 | 0.6842 | 1.0000 | 0.6842 | D | -6 |
| oligos_6-8nt_m8 | dyads_m7 | oligos_6-8nt_m8 | dyads_m7 | 0.810 | 0.597 | 14 | 19 | 14 | 19 | 0.7368 | 1.0000 | 0.7368 | R | -5 |
| dyads_m7 | oligos_6-8nt_m8 | dyads_m7 | oligos_6-8nt_m8 | 0.810 | 0.597 | 19 | 14 | 14 | 19 | 0.7368 | 0.7368 | 1.0000 | R | 0 |
| dyads_m2 | dyads_m7 | dyads_m2 | dyads_m7 | 0.741 | 0.592 | 17 | 19 | 16 | 20 | 0.8000 | 0.9412 | 0.8421 | D | -3 |
| dyads_m7 | dyads_m2 | dyads_m7 | dyads_m2 | 0.741 | 0.592 | 19 | 17 | 16 | 20 | 0.8000 | 0.8421 | 0.9412 | D | 3 |
| oligos_6-8nt_m3 | dyads_m4 | oligos_6-8nt_m3 | dyads_m4 | 0.841 | 0.521 | 13 | 21 | 13 | 21 | 0.6190 | 1.0000 | 0.6190 | D | -5 |
| dyads_m4 | oligos_6-8nt_m3 | dyads_m4 | oligos_6-8nt_m3 | 0.841 | 0.521 | 21 | 13 | 13 | 21 | 0.6190 | 0.6190 | 1.0000 | D | 5 |
| oligos_6-8nt_m7 | dyads_m7 | oligos_6-8nt_m7 | dyads_m7 | 0.714 | 0.428 | 13 | 19 | 12 | 20 | 0.6000 | 0.9231 | 0.6316 | D | -7 |
| dyads_m7 | oligos_6-8nt_m7 | dyads_m7 | oligos_6-8nt_m7 | 0.714 | 0.428 | 19 | 13 | 12 | 20 | 0.6000 | 0.6316 | 0.9231 | D | 7 |
Host name rsat Job started 2026-01-25.181134 Job done 2026-01-25.181148 Seconds 1.14 user 1.14 system 0.51 cuser 10.77 ; csystem 1.48