/var/www/html/rsat/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.html
 Matrices
	file1	21 matrices	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	10	534
		file1	2	13	1627
		file1	3	17	2145
		file1	4	13	2389
		file1	5	14	1119
		file1	6	14	1400
		file1	7	12	1761
		file1	8	13	1968
		file1	9	14	2217
		file1	10	11	2750
		file1	11	12	1138
		...	11 more matrices
	file2	41 matrices	$RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf
		file2		1		6		45.00005
		file2		2		6		18
		file2		3		6		14
		file2		4		8		49.00004
		file2		5		8		18.00005
		file2		6		7		21
		file2		7		11		16
		file2		8		8		8
		file2		9		7		11
		file2		10		8		10
		file2		11		9		13
		...	31 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6-8nt_m8 Trl oligos_6-8nt_m8 Trl 0.789 0.732 14 13 13 14 0.9286 0.9286 1.0000 R 0
oligos_6-8nt_m6 Dref oligos_6-8nt_m6 Dref 0.758 0.632 12 10 10 12 0.8333 0.8333 1.0000 R 1
dyads_m2 Trl dyads_m2 Trl 0.814 0.622 17 13 13 17 0.7647 0.7647 1.0000 D 0
oligos_6-8nt_m3 hb oligos_6-8nt_m3 hb 0.728 0.504 13 9 9 13 0.6923 0.6923 1.0000 D 2
positions_6-8nt_m1 br-Z2 positions_6-8nt_m1 br-Z2 0.913 0.498 10 7 6 11 0.5455 0.6000 0.8571 R -1
oligos_6-8nt_m3 br-Z4 oligos_6-8nt_m3 br-Z4 0.800 0.492 13 8 8 13 0.6154 0.6154 1.0000 R 4
dyads_m6 brk dyads_m6 brk 0.829 0.484 12 7 7 12 0.5833 0.5833 1.0000 D 0
dyads_m6 Med dyads_m6 Med 0.716 0.460 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_6-8nt_m3 zen oligos_6-8nt_m3 zen 0.954 0.440 13 6 6 13 0.4615 0.4615 1.0000 D 2
oligos_6-8nt_m3 Dfd oligos_6-8nt_m3 Dfd 0.709 0.436 13 8 8 13 0.6154 0.6154 1.0000 R 3
oligos_6-8nt_m3 Antp oligos_6-8nt_m3 Antp 0.939 0.433 13 6 6 13 0.4615 0.4615 1.0000 D 6
dyads_m7 Trl dyads_m7 Trl 0.713 0.428 19 13 12 20 0.6000 0.6316 0.9231 D -1
oligos_6-8nt_m4 z oligos_6-8nt_m4 z 0.958 0.410 14 6 6 14 0.4286 0.4286 1.0000 R 3
dyads_m8 brk dyads_m8 brk 0.745 0.406 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_6-8nt_m3 ap oligos_6-8nt_m3 ap 0.875 0.404 13 6 6 13 0.4615 0.4615 1.0000 D 6 
 Host name	rsat
 Job started	2026-01-25.181200
 Job done	2026-01-25.181204
 Seconds	0.58
	user	0.58
	system	0.14
	cuser	3.34
;	csystem	0.5