RSAT - peak-motifs result

Analysis: IDR (25/01/2026 18:12)

peak-motifs  -v 1 -title IDR -i $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions,local_words -nmotifs 10 -minol 6 -maxol 8 -merge_lengths -2str -origin center -motif_db DMMPMM_drosophila tf $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU

motif discovery
positions_6-8nt	positions_6-8nt_m1 assembly: atagga (sig=1.12; e-value=0.076) RC: tcctat positions_6-8nt_m2 : (sig=; e-value=1) RC: positions_6-8nt_m3 : (sig=; e-value=1) RC: positions_6-8nt_m4 : (sig=; e-value=1) RC: positions_6-8nt_m5 : (sig=; e-value=1) RC: positions_6-8nt_m6 : (sig=; e-value=1) RC: positions_6-8nt_m7 : (sig=; e-value=1) RC: positions_6-8nt_m8 : (sig=; e-value=1) RC: positions_6-8nt_m9 : (sig=; e-value=1) RC: positions_6-8nt_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_6-8nt	Not a single significant pattern	[local_words_6-8nt]
oligos_6-8nt	oligos_6-8nt_m1 assembly: catacatac (sig=56.20; e-value=6.3e-57) RC: gtatgtatg oligos_6-8nt_m2 assembly: acacgcacacacg (sig=39.27; e-value=5.4e-40) RC: cgtgtgtgcgtgt oligos_6-8nt_m3 assembly: aataaataa (sig=35.14; e-value=7.2e-36) RC: ttatttatt oligos_6-8nt_m4 assembly: gcactcacct (sig=34.67; e-value=2.1e-35) RC: aggtgagtgc oligos_6-8nt_m5 assembly: aaacaacaaa (sig=25.63; e-value=2.3e-26) RC: tttgttgttt oligos_6-8nt_m6 assembly: aatcgatt (sig=22.93; e-value=1.2e-23) RC: aatcgatt oligos_6-8nt_m7 assembly: tcctcctcg (sig=22.43; e-value=3.7e-23) RC: cgaggagga oligos_6-8nt_m8 assembly: agagagcgag (sig=21.44; e-value=3.6e-22) RC: ctcgctctct oligos_6-8nt_m9 assembly: aagaaga (sig=16.55; e-value=2.8e-17) RC: tcttctt oligos_6-8nt_m10 assembly: gaactgaa (sig=15.49; e-value=3.2e-16) RC: ttcagttc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
dyads	dyads_m1 assembly: cacacacacacaa (sig=246.12; e-value=7.6e-247) RC: ttgtgtgtgtgtg dyads_m2 assembly: cctctccctctcc (sig=190.17; e-value=6.8e-191) RC: ggagagggagagg dyads_m3 assembly: ggcagcagcagcg (sig=178.43; e-value=3.7e-179) RC: cgctgctgctgcc dyads_m4 assembly: taaaatataaataaaat (sig=175.92; e-value=1.2e-176) RC: attttatttatatttta dyads_m5 assembly: cacacacacacaacaacaac (sig=246.12; e-value=7.6e-247) RC: gttgttgttgtgtgtgtgtg dyads_m6 assembly: cgccgccg (sig=117.18; e-value=6.6e-118) RC: cggcggcg dyads_m7 assembly: ctcnnnnnnnnnctc (sig=101.99; e-value=1e-102) RC: gagnnnnnnnnngag dyads_m8 assembly: gccacc (sig=89.12; e-value=7.6e-90) RC: ggtggc dyads_m9 assembly: aataaaaataaataa (sig=175.92; e-value=1.2e-176) RC: ttatttatttttatt dyads_m10 assembly: accacc (sig=79.89; e-value=1.3e-80) RC: ggtggt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   positions_6-8nt_m1	k-mer sig=1.12; evalue=0.076 rtATAGGAww WWTCCTATAY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rtATAGGAww br-Z2 br-Z2 R 6 0.5455 0.913 0.498 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 183 (15.40%) Max nb of predicted sites per peak: 3  (.::chr3R:30023228-30023807(.)) Mean nb of predicted sites per peak: 1.14	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6-8nt_m1	k-mer sig=56.20; evalue=6.3e-57 yacATACATACay RTGTATGTATGTR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yacATACATACay Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 399 (33.59%) Max nb of predicted sites per peak: 13  (.::chr4:488882-489705(.)) Mean nb of predicted sites per peak: 2.35	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6-8nt_m2	k-mer sig=39.27; evalue=5.4e-40 acaCACrCACACACrca TGYGTGTGTGYGTGTGT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor acaCACrCACACACrca Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 398 (33.50%) Max nb of predicted sites per peak: 37  (.::chrX:7293140-7294443(.)) Mean nb of predicted sites per peak: 7.31	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6-8nt_m3	k-mer sig=35.14; evalue=7.2e-36 wwaaTAAATAAww WWTTATTTATTWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwaaTAAATAAww hb hb D 9 0.6923 0.728 0.504 NA NA br-Z4 br-Z4 R 8 0.6154 0.800 0.492 NA NA zen zen D 6 0.4615 0.954 0.440 NA NA Total matches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 482 (40.57%) Max nb of predicted sites per peak: 9  (.::chr3L:781204-781728(.)) Mean nb of predicted sites per peak: 1.83	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6-8nt_m4	k-mer sig=34.67; evalue=2.1e-35 mcgCACTCACctmc GKAGGTGAGTGCGK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mcgCACTCACctmc z z R 6 0.4286 0.958 0.410 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 292 (24.58%) Max nb of predicted sites per peak: 5  (.::chrX:7293140-7294443(.)) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_6-8nt_m5	k-mer sig=25.63; evalue=2.3e-26 awAAACAACAAAwa TWTTTGTTGTTTWT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor awAAACAACAAAwa Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 401 (33.75%) Max nb of predicted sites per peak: 9  (.::chr2R:13191356-13192813(.)) Mean nb of predicted sites per peak: 1.77	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_6-8nt_m6	k-mer sig=22.93; evalue=1.2e-23 vmaATCGATtkb VMAATCGATTKB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor vmaATCGATtkb Dref Dref R 10 0.8333 0.758 0.632 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 188 (15.82%) Max nb of predicted sites per peak: 6  (.::chr3R:26866446-26867865(.)) Mean nb of predicted sites per peak: 2.39	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_6-8nt_m7	k-mer sig=22.43; evalue=3.7e-23 cstCCTCCTCstc GASGAGGAGGASG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor cstCCTCCTCstc Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 408 (34.34%) Max nb of predicted sites per peak: 13  (.::chr3R:30043167-30044555(.)) Mean nb of predicted sites per peak: 2.24	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_6-8nt_m8	k-mer sig=21.44; evalue=3.6e-22 agAGAGAGmGAGag CTCTCKCTCTCTCT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor agAGAGAGmGAGag Trl Trl R 13 0.9286 0.789 0.732 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 363 (30.56%) Max nb of predicted sites per peak: 30  (.::chr2L:489859-491108(.)) Mean nb of predicted sites per peak: 5.07	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_6-8nt_m9	k-mer sig=16.55; evalue=2.8e-17 agAAGAAGAas STTCTTCTTCT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor agAAGAAGAas Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 258 (21.72%) Max nb of predicted sites per peak: 6  (.::chrX:12750519-12752524(.)) Mean nb of predicted sites per peak: 1.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   oligos_6-8nt_m10	k-mer sig=15.49; evalue=3.2e-16 wsGAACTGAAar YTTTCAGTTCSW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wsGAACTGAAar Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 143 (12.04%) Max nb of predicted sites per peak: 4  (.::chr2R:23978232-23980754(.)) Mean nb of predicted sites per peak: 1.14	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   dyads_m1	k-mer sig=246.12; evalue=7.6e-247 caCACACACACACAmac GTKTGTGTGTGTGTGTG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor caCACACACACACAmac Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 388 (32.66%) Max nb of predicted sites per peak: 40  (.::chrX:7293140-7294443(.)) Mean nb of predicted sites per peak: 8.08	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   dyads_m2	k-mer sig=190.17; evalue=6.8e-191 yccCTCTCyCTCTCycy RGRGAGAGRGAGAGGGR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yccCTCTCyCTCTCycy Trl Trl D 13 0.7647 0.814 0.622 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 417 (35.10%) Max nb of predicted sites per peak: 30  (.::chr3R:14017700-14018290(.)) Mean nb of predicted sites per peak: 4.39	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   dyads_m3	k-mer sig=178.43; evalue=3.7e-179 gcrGCAGCAGCAGCrgc GCYGCTGCTGCTGCYGC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gcrGCAGCAGCAGCrgc Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 418 (35.19%) Max nb of predicted sites per peak: 28  (.::chr2L:7025111-7025867(.)) Mean nb of predicted sites per peak: 3.36	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   dyads_m4	k-mer sig=175.92; evalue=1.2e-176 wwwAAAATATAAATAAAatww WWATTTTATTTATATTTTWWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwwAAAATATAAATAAAatww Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 587 (49.41%) Max nb of predicted sites per peak: 21  (.::chr3L:11348882-11349962(.)) Mean nb of predicted sites per peak: 3.34	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 16   dyads_m5	k-mer sig=246.12; evalue=7.6e-247 caCACACACACACAmmmACAmmma TKKKTGTKKKTGTGTGTGTGTGTG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor caCACACACACACAmmmACAmmma Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 390 (32.83%) Max nb of predicted sites per peak: 37  (.::chrX:7293140-7294443(.)) Mean nb of predicted sites per peak: 7.49	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 17   dyads_m6	k-mer sig=117.18; evalue=6.6e-118 gsCGCCGCCGcc GGCGGCGGCGSC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gsCGCCGCCGcc brk brk D 7 0.5833 0.829 0.484 NA NA Med Med D 9 0.6429 0.716 0.460 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 379 (31.90%) Max nb of predicted sites per peak: 9  (.::chrX:764402-765498(.)) Mean nb of predicted sites per peak: 1.78	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 18   dyads_m7	k-mer sig=101.99; evalue=1e-102 yyCTCycyctcyyyCTCyy RRGAGRRRGAGRGRGAGRR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yyCTCycyctcyyyCTCyy Trl Trl D 12 0.6000 0.713 0.428 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 519 (43.69%) Max nb of predicted sites per peak: 27  (.::chr3R:14017700-14018290(.)) Mean nb of predicted sites per peak: 3.35	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 19   dyads_m8	k-mer sig=89.12; evalue=7.6e-90 ybGCCACCrv BYGGTGGCVR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ybGCCACCrv brk brk D 6 0.5455 0.745 0.406 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 538 (45.29%) Max nb of predicted sites per peak: 6  (.::chr2R:12948704-12950048(.)) Mean nb of predicted sites per peak: 1.49	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 20   dyads_m9	k-mer sig=175.92; evalue=1.2e-176 wwaAtAAAAATAAATAaww WWTTATTTATTTTTATTWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwaAtAAAAATAAATAaww Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 584 (49.16%) Max nb of predicted sites per peak: 20  (.::chr3L:11348882-11349962(.)) Mean nb of predicted sites per peak: 3.16	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 21   dyads_m10	k-mer sig=79.89; evalue=1.3e-80 ccACCACCam KTGGTGGTGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ccACCACCam Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 405 (34.09%) Max nb of predicted sites per peak: 10  (.::chr3L:11116134-11117787(.)) Mean nb of predicted sites per peak: 1.58	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title IDR -i $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions,local_words -nmotifs 10 -minol 6 -maxol 8 -merge_lengths -2str -origin center -motif_db DMMPMM_drosophila tf $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU

Warning: Number of patterns = 300. Exceeds top number = 100. Only the top 100 patterns will be assembled.

Warning: Not a single pattern was found in file tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180905_2026-01-25.180905_kvVFaU/results/local_words_6-8nt/peak-motifs_local_words-2str-noov_6-8nt_windgroup50.tab