position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title IDR-final -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 511 Sum of sequence lengths 414237 Min sequence length 0 Max sequence length 1000 Average sequence length 810 Possible positions 414237 Oligonucleotide statistics: Total occurrences 413861 Position interval parameters: Position interval 20 Number of windows 50 Total positions 414237 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 251 4901 2 -24 [-479,-460] -469.5 266 5167 3 -23 [-459,-440] -449.5 280 5479 4 -22 [-439,-420] -429.5 297 5801 5 -21 [-419,-400] -409.5 307 6038 6 -20 [-399,-380] -389.5 316 6262 7 -19 [-379,-360] -369.5 332 6514 8 -18 [-359,-340] -349.5 349 6825 9 -17 [-339,-320] -329.5 366 7159 10 -16 [-319,-300] -309.5 381 7448 11 -15 [-299,-280] -289.5 402 7838 12 -14 [-279,-260] -269.5 419 8228 13 -13 [-259,-240] -249.5 447 8659 14 -12 [-239,-220] -229.5 468 9141 15 -11 [-219,-200] -209.5 494 9732 16 -10 [-199,-180] -189.5 511 10089 17 -9 [-179,-160] -169.5 511 10220 18 -8 [-159,-140] -149.5 511 10220 19 -7 [-139,-120] -129.5 511 10220 20 -6 [-119,-100] -109.5 511 10220 21 -5 [-99,-80] -89.5 511 10220 22 -4 [-79,-60] -69.5 511 10220 23 -3 [-59,-40] -49.5 511 10220 24 -2 [-39,-20] -29.5 511 10220 25 -1 [-19,0] -9.5 511 10220 26 0 [1,20] 10.5 511 10220 27 1 [21,40] 30.5 511 10220 28 2 [41,60] 50.5 511 10220 29 3 [61,80] 70.5 511 10220 30 4 [81,100] 90.5 511 10220 31 5 [101,120] 110.5 511 10220 32 6 [121,140] 130.5 511 10220 33 7 [141,160] 150.5 511 10220 34 8 [161,180] 170.5 511 10220 35 9 [181,200] 190.5 511 10069 36 10 [201,220] 210.5 492 9706 37 11 [221,240] 230.5 467 9119 38 12 [241,260] 250.5 445 8629 39 13 [261,280] 270.5 419 8210 40 14 [281,300] 290.5 402 7813 41 15 [301,320] 310.5 380 7432 42 16 [321,340] 330.5 364 7136 43 17 [341,360] 350.5 349 6808 44 18 [361,380] 370.5 331 6498 45 19 [381,400] 390.5 316 6253 46 20 [401,420] 410.5 306 6032 47 21 [421,440] 430.5 295 5784 48 22 [441,460] 450.5 280 5463 49 23 [461,480] 470.5 264 5153 50 24 [481,500] 490.5 250 4891 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 109895 | 76.4 | 49 | 7.4e-03 | 0.03 | 1.53 | 1 | 1279 | 1344 | 1479 | 1560 | 1648 | 1672 | 1722 | 1772 | 1883 | 2020 | 2202 | 2186 | 2288 | 2463 | 2633 | 2727 | 2826 | 2876 | 2755 | 2584 | 2668 | 2758 | 2704 | 2711 | 2653 | 2674 | 2700 | 2551 | 2594 | 2718 | 2745 | 2727 | 2731 | 2802 | 2730 | 2592 | 2332 | 2280 | 2133 | 2089 | 1868 | 1876 | 1745 | 1694 | 1625 | 1549 | 1576 | 1479 | 1352 | 1320 |
| a | a | 110610 | 67.9 | 49 | 3.8e-02 | 0.15 | 0.81 | 2 | 1341 | 1410 | 1435 | 1511 | 1543 | 1658 | 1706 | 1896 | 1967 | 1986 | 2121 | 2228 | 2316 | 2434 | 2688 | 2773 | 2784 | 2599 | 2703 | 2758 | 2664 | 2642 | 2622 | 2698 | 2605 | 2719 | 2726 | 2700 | 2725 | 2673 | 2632 | 2660 | 2696 | 2733 | 2731 | 2615 | 2528 | 2352 | 2262 | 2071 | 2029 | 1923 | 1897 | 1752 | 1673 | 1629 | 1544 | 1538 | 1441 | 1273 |
| c | c | 97057 | 60.8 | 49 | 1.2e-01 | 0.48 | 0.32 | 3 | 1174 | 1189 | 1273 | 1363 | 1432 | 1494 | 1560 | 1624 | 1636 | 1760 | 1794 | 1975 | 2054 | 2143 | 2225 | 2282 | 2307 | 2429 | 2376 | 2491 | 2476 | 2466 | 2491 | 2429 | 2466 | 2393 | 2355 | 2480 | 2470 | 2396 | 2419 | 2395 | 2391 | 2342 | 2317 | 2189 | 2083 | 1938 | 1879 | 1784 | 1759 | 1659 | 1534 | 1567 | 1497 | 1411 | 1298 | 1208 | 1248 | 1136 |
| g | g | 96299 | 59.2 | 49 | 1.5e-01 | 0.61 | 0.22 | 4 | 1107 | 1224 | 1292 | 1367 | 1411 | 1418 | 1509 | 1533 | 1673 | 1682 | 1721 | 1839 | 1982 | 2081 | 2182 | 2290 | 2283 | 2300 | 2386 | 2387 | 2412 | 2354 | 2391 | 2362 | 2488 | 2420 | 2419 | 2469 | 2422 | 2425 | 2404 | 2408 | 2382 | 2331 | 2291 | 2308 | 2156 | 2039 | 1932 | 1869 | 1776 | 1678 | 1632 | 1485 | 1458 | 1443 | 1366 | 1238 | 1112 | 1162 |
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