One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10_vs_db_DMMPMM_drosophila

One-to-n matrix alignment; reference matrix: dyads_m10_shift0 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m10_shift0 (dyads_m10)
; dyads_m10; m=0 (reference); ncol1=12; shift=0; ncol=12; wwTTATTTAAww ; Alignment reference a 372 298 90 45 858 52 36 56 864 819 335 277 c 118 138 29 23 18 22 14 23 37 34 157 146 g 166 145 27 35 52 15 25 27 25 25 143 144 t 329 404 839 882 57 896 910 879 59 107 350 418

br-Z4_shift1 (br-Z4)
; dyads_m10 versus br-Z4; m=1/7; ncol2=8; w=0; offset=1; strand=D; shift=1; score=0.527905; -AhTRdTTA--- ; cor=; Ncor= a 0 7 3 0 6 3 0 1 7 0 0 0 c 0 0 2 0 0 0 0 0 0 0 0 0 g 0 0 0 0 2 3 0 0 0 0 0 0 t 0 1 3 8 0 2 8 7 1 0 0 0

hb_rc_shift2 (hb_rc)
; dyads_m10 versus hb_rc; m=2/7; ncol2=9; w=0; offset=2; strand=R; shift=2; score=0.526578; --tTTTTTrtk- ; cor=; Ncor= a 0 0 15.1456 0 1.00971 0 1.00971 2.01942 62.6019 23.2233 3.02913 0 c 0 0 12.1165 0 4.03883 0 0 4.03883 11.1068 17.165 21.2039 0 g 0 0 8.07767 1.00971 1.00971 0 1.00971 1.00971 29.2816 16.1553 49.4757 0 t 0 0 68.6602 102.99 97.9417 104 101.981 96.932 1.00971 47.4563 30.2913 0

Antp_rc_shift1 (Antp_rc)
; dyads_m10 versus Antp_rc; m=3/7; ncol2=6; w=0; offset=1; strand=R; shift=1; score=0.469918; -wTTATk----- ; cor=; Ncor= a 0 10.5 0 0 18 0 0 0 0 0 0 0 c 0 0 0 1.5 0 0 3 0 0 0 0 0 g 0 0 0 0 0 0 4.5 0 0 0 0 0 t 0 7.5 18 16.5 0 18 10.5 0 0 0 0 0

zen_rc_shift1 (zen_rc)
; dyads_m10 versus zen_rc; m=4/7; ncol2=6; w=0; offset=1; strand=R; shift=1; score=0.452011; -TTwATT----- ; cor=; Ncor= a 0 0 0 4.33333 11.9167 1.08333 0.541667 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 1.08333 0 0.541667 0 0 0 0 0 t 0 13 13 8.66667 0 11.9167 11.9167 0 0 0 0 0

ap_rc_shift1 (ap_rc)
; dyads_m10 versus ap_rc; m=5/7; ncol2=6; w=0; offset=1; strand=R; shift=1; score=0.445503; -aTdATT----- ; cor=; Ncor= a 0 8 0 4 12 0 0 0 0 0 0 0 c 0 3 1 1 1 0 0 0 0 0 0 0 g 0 1 0 4 1 0 0 0 0 0 0 0 t 0 2 13 5 0 14 14 0 0 0 0 0

abd-A_rc_shift0 (abd-A_rc)
; dyads_m10 versus abd-A_rc; m=6/7; ncol2=6; w=0; offset=0; strand=R; shift=0; score=0.437727; AWTTAt------ ; cor=; Ncor= a 35.122 30.7317 4.39024 0 40.6098 7.68293 0 0 0 0 0 0 c 6.58537 0 0 3.29268 1.09756 4.39024 0 0 0 0 0 0 g 3.29268 0 0 1.09756 3.29268 5.4878 0 0 0 0 0 0 t 0 14.2683 40.6098 40.6098 0 27.439 0 0 0 0 0 0

ftz_rc_shift5 (ftz_rc)
; dyads_m10 versus ftz_rc; m=7/7; ncol2=8; w=0; offset=5; strand=R; shift=5; score=0.407677; -----kyTaATk ; cor=; Ncor= a 0 0 0 0 0 7 6 0 44 64 2 7 c 0 0 0 0 0 14 18 1 3 1 0 0 g 0 0 0 0 0 17 7 3 4 1 1 29 t 0 0 0 0 0 28 35 62 15 0 63 30

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m10_shift0 (dyads_m10)				; dyads_m10; m=0 (reference); ncol1=12; shift=0; ncol=12; wwTTATTTAAww ; Alignment reference a 372 298 90 45 858 52 36 56 864 819 335 277 c 118 138 29 23 18 22 14 23 37 34 157 146 g 166 145 27 35 52 15 25 27 25 25 143 144 t 329 404 839 882 57 896 910 879 59 107 350 418
br-Z4_shift1 (br-Z4)				; dyads_m10 versus br-Z4; m=1/7; ncol2=8; w=0; offset=1; strand=D; shift=1; score=0.527905; -AhTRdTTA--- ; cor=; Ncor= a 0 7 3 0 6 3 0 1 7 0 0 0 c 0 0 2 0 0 0 0 0 0 0 0 0 g 0 0 0 0 2 3 0 0 0 0 0 0 t 0 1 3 8 0 2 8 7 1 0 0 0
hb_rc_shift2 (hb_rc)				; dyads_m10 versus hb_rc; m=2/7; ncol2=9; w=0; offset=2; strand=R; shift=2; score=0.526578; --tTTTTTrtk- ; cor=; Ncor= a 0 0 15.1456 0 1.00971 0 1.00971 2.01942 62.6019 23.2233 3.02913 0 c 0 0 12.1165 0 4.03883 0 0 4.03883 11.1068 17.165 21.2039 0 g 0 0 8.07767 1.00971 1.00971 0 1.00971 1.00971 29.2816 16.1553 49.4757 0 t 0 0 68.6602 102.99 97.9417 104 101.981 96.932 1.00971 47.4563 30.2913 0
Antp_rc_shift1 (Antp_rc)				; dyads_m10 versus Antp_rc; m=3/7; ncol2=6; w=0; offset=1; strand=R; shift=1; score=0.469918; -wTTATk----- ; cor=; Ncor= a 0 10.5 0 0 18 0 0 0 0 0 0 0 c 0 0 0 1.5 0 0 3 0 0 0 0 0 g 0 0 0 0 0 0 4.5 0 0 0 0 0 t 0 7.5 18 16.5 0 18 10.5 0 0 0 0 0
zen_rc_shift1 (zen_rc)				; dyads_m10 versus zen_rc; m=4/7; ncol2=6; w=0; offset=1; strand=R; shift=1; score=0.452011; -TTwATT----- ; cor=; Ncor= a 0 0 0 4.33333 11.9167 1.08333 0.541667 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 1.08333 0 0.541667 0 0 0 0 0 t 0 13 13 8.66667 0 11.9167 11.9167 0 0 0 0 0
ap_rc_shift1 (ap_rc)				; dyads_m10 versus ap_rc; m=5/7; ncol2=6; w=0; offset=1; strand=R; shift=1; score=0.445503; -aTdATT----- ; cor=; Ncor= a 0 8 0 4 12 0 0 0 0 0 0 0 c 0 3 1 1 1 0 0 0 0 0 0 0 g 0 1 0 4 1 0 0 0 0 0 0 0 t 0 2 13 5 0 14 14 0 0 0 0 0
abd-A_rc_shift0 (abd-A_rc)				; dyads_m10 versus abd-A_rc; m=6/7; ncol2=6; w=0; offset=0; strand=R; shift=0; score=0.437727; AWTTAt------ ; cor=; Ncor= a 35.122 30.7317 4.39024 0 40.6098 7.68293 0 0 0 0 0 0 c 6.58537 0 0 3.29268 1.09756 4.39024 0 0 0 0 0 0 g 3.29268 0 0 1.09756 3.29268 5.4878 0 0 0 0 0 0 t 0 14.2683 40.6098 40.6098 0 27.439 0 0 0 0 0 0
ftz_rc_shift5 (ftz_rc)				; dyads_m10 versus ftz_rc; m=7/7; ncol2=8; w=0; offset=5; strand=R; shift=5; score=0.407677; -----kyTaATk ; cor=; Ncor= a 0 0 0 0 0 7 6 0 44 64 2 7 c 0 0 0 0 0 14 18 1 3 1 0 0 g 0 0 0 0 0 17 7 3 4 1 1 29 t 0 0 0 0 0 28 35 62 15 0 63 30