One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_vs_db_DMMPMM_drosophila

One-to-n matrix alignment; reference matrix: dyads_m2_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m2_shift0 (dyads_m2)				; dyads_m2; m=0 (reference); ncol1=20; shift=0; ncol=20; tctCTCTCTCTCTCTCTCtc ; Alignment reference a 147 126 110 69 83 58 83 52 77 38 89 43 95 40 102 40 111 49 172 114 c 288 819 185 1046 137 1080 140 1116 114 1144 91 1135 101 1130 88 1123 108 1068 219 817 g 259 146 212 84 186 81 180 60 137 47 135 40 163 44 149 48 137 76 208 164 t 614 217 801 109 902 89 905 80 980 79 993 90 949 94 969 97 952 115 709 213
Trl_shift0 (Trl)				; dyads_m2 versus Trl; m=1/1; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.553802; TtkykCTCtCtct------- ; cor=; Ncor= a 10 15 4 0 7 0 4 2 6 13 9 4 18 0 0 0 0 0 0 0 c 10 8 19 41 3 72 0 56 12 56 16 47 3 0 0 0 0 0 0 0 g 0 13 24 10 27 5 11 8 9 1 6 9 14 0 0 0 0 0 0 0 t 57 41 30 26 40 0 62 11 50 7 46 17 42 0 0 0 0 0 0 0