One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/dyads_m7/peak-motifs_dyads_m7.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/dyads_m7/peak-motifs_dyads_m7_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: dyads_m7_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m7_shift0 (dyads_m7) |
 |
|
|
; dyads_m7; m=0 (reference); ncol1=21; shift=0; ncol=21; agrGAGAGaGAGAGAGAGAga
; Alignment reference
a 437 175 436 80 707 66 713 59 476 62 715 49 717 49 692 47 686 59 637 141 448
c 154 129 110 57 89 27 87 29 142 48 94 34 84 39 91 39 120 62 130 107 196
g 206 540 293 761 75 807 57 819 227 797 73 824 72 820 100 821 70 783 108 616 207
t 137 90 95 36 63 34 77 27 89 27 52 27 61 26 51 27 58 30 59 70 83
|
| Trl_rc_shift8 (Trl_rc) |
 |
|
|
; dyads_m7 versus Trl_rc; m=1/1; ncol2=13; w=0; offset=8; strand=R; shift=8; score=0.521186; --------agaGaGAGmrmaA
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 42 17 46 7 50 11 62 0 40 26 30 41 57
c 0 0 0 0 0 0 0 0 14 9 6 1 9 8 11 5 27 10 24 13 0
g 0 0 0 0 0 0 0 0 3 47 16 56 12 56 0 72 3 41 19 8 10
t 0 0 0 0 0 0 0 0 18 4 9 13 6 2 4 0 7 0 4 15 10
|